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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10406#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1788 fasta sequence
[GCCTGCACGGTATCCCCATTCCATAACCATTCCAGCAACAGCTGTCTCCTTCTCTCTCCGCCGCCGGCGAAACCGCAACGGCGCAGAGGAGAAAATGTGGGAAGCCGAGGAGATCGAGGACGAGGAAACTCTAGAGGCGCTTCTAGAAGCTTCCCGAAGCGCCCAGGGCCGGGCCGCGCTCTCCGACGCCCTCGCCGACACCCTCCACCTCCTGCCGGCCTCCACCCACCGCCTCCTGCTCCTCCGCCTCCGCCTCCTCCGCAACCTCCTCGCCGGCGACGACCTCAACCAGGGCACCTTCGTCCTCCT-CTCCGGCCCCGCCGCGGTCGTCTCCTCCGCCCTCTCCTCCCCCTCCGACTCCTCCGACGTCGCGCGCGCGGGCCTCCAGGCGCTGGGCAACGCCGCGCTCGCCGGGGAGCACCACCGCGCCGCCGTCTGGGATGCGCTCTTCCCTGGCTCGCTGCTGGAGCTCGCGCGGGTCAGGGAGAAGGGAGTCCTCGACCCACTGTGCATGGTGATCGACACCTGCTGCTCCGGCGAAGGCGGCCGCGGGAGGCTCGAGGAGCTCTGCCACGAGGAGTTAGGGCTGCCCATACTTGTGGAAATCGTCACTACTGCCTGGCAAGTGGGGCATGATGAAGAATGGTTAGAATGGCTTCTCTTCAAAATCTGTGTTGAGGAGCAAAAGTTTGAAACATTGTTTGTAGCTTTATGCTCACGCAATGATGCTGAGCACAGTGATGGTGATGAATGCAAAACTGAGTTTAATGCTAAGCATGCATATCTTTTGGGTAAATTGTCAAAATGTTTGGCTAACCGACCTAAAGAAGTCAGTGTATCGATCAGTTTTGCACTTGATATTTTCAATGCACAGAAGCATGCTGCTGAGATTGTGGATTTTACTTGCCGAGTTAACTCTCCTCTTCCAACTGGTCACCCTGCAATTGATGTACTTGGATATTCATTGGTGCTCTTGAAGGATATATGTGCTTGGGAATCCCCTCCGTCAGACACACAGGCTCCTGTTGACTCACTGATGCAGACTGGTCTTGTAAAGCATCTTCTAACGTACTTACGTGAGCTAGAACCCCCAAGTATGATCAGAAAATCTATGGCAAGGGGACAAGGAGATCATCAACCA-GCCTTAGGAACTGCAAAAGTCTGCCCATACATTGGTTAC-AGGAGAGATGTAGTCGCTGTGATTGCTAATTGCTTGCATAGAAGCAAAAAAGTGCAGGATG-AGGTGAGGCACCTGGATGGGATTATTTTACTCTTGCA-GCAGT-GTGTTGTTGATGAAG-A-AAACCCATACTTGAGGGAGTGGGGTCTT-TTTGCTGTGAAGAACTTGCTTGAAGGAAATGAGGAAAACCAGAAGGAGGTATCTGGACTTAAGATGCAAGAAGCTGTTATAACTCCAGAGATTGCTGACATAGGTCTAAGAGTGGAGATAGACAAGGAAACAGGACATCCGAAACTGGTTAATAACTGATGATACTTTCCATTTTGATCCTTCATGTTTGAGGTGAAAAGAAAAGGGAGATCAGACTCACGTACCGACGTTCCTCTCATTAACGGAAGCAAACTAATATTGCCGCTGCCTTCTGCACCCCCGGGAAGATAGGTGTTGCTTTTTTTCATTAATGTTAGTCATGTTAATATTGATGGCGAGCATTTGAACCACCGGGATTCAGATACTTTCTTGGAGAAATGAATGCTAATGGTTTTTTACGTTGCATCAAAACAGTGATGTGGTGAGATGTTTCTAGATCCACTCTTATCATAGGCGTCCGT]
[+] EMBL AK073382 [GCCTGCACGGTATCCCCATTCCATAACCATTCCAGCAACAGCTGTCTCCTTCTCTCTCCGCCGCCGGCGAAACCGCAACGGCGCAGAGGAGAAAATGTGGGAAGCCGAGGAGATCGAGGACGAGGAAACTCTAGAGGCGCTTCTAGAAGCTTCCCGAAGCGCCCAGGGCCGGGCCGCGCTCTCCGACGCCCTCGCCGACACCCTCCACCTCCTGCCGGCCTCCACCCACCGCCTCCTGCTCCTCCGCCTCCGCCTCCTCCGCAACCTCCTCGCCGGCGACGACCTCAACCAGGGCACCTTCGTCCTCCT CTCCGGCCCCGCCGCGGTCGTCTCCTCCGCCCTCTCCTCCCCCTCCGACTCCCCCGACGTCGCGCGCGCGGGCCTCCAGGCGCTGGGCAACGCCGCGCTCGCCGGGGAGCACCACCGCGCCGCCGTCTGGGATGCGCTCTTCCCTGGCTCGCTGCTGGAGCTCGCGCGGGTCAGGGAGAAGGGAGTCCTCGACCCACTGTGCATGGTGATCGACACCTGCTGCTCCGGCGAAGGCGGCCGCGGGAGGCTCGAGGAGCTCTGCCACGAGGAGTTAGGGCTGCCCATACTTGTGGAAATCGTCACTACTGCCTGGCAAGTGGGGCATGATGAAGAATGGTTAGAATGGCTTCTCTTCAAAATCTGTGTTGAGGAGCAAAAGTTTGAAACATTGTTTGTAGCTTTATGCTCACGCAATGATGCTGAGCACAGTGATGGTGATGAATGCAAAACTGAGTTTAATGCTAAGCATGCATATCTTTTGGGTAAATTGTCAAAATGTTTGGCTAACCGACCTAAAGAAGTCAGTGTATCGATCAGTTTTGCACTTGATATTTTCAATGCACAGAAGCATGCTGCTGAGATTGTGGATTTTACTTGCCGAGTTAACTCTCCTCTTCCAACTGGTCACCCTGCAATTGATGTACTTGGATATTCATTGGTGCTCTTGAAGGATATATGTGCTTGGGAATCCCCTCCGTCAGACACACAGGCTCCTGTTGACTCACTGATGCAGACTGGTCTTGTAAAGCATCTTCTAACGTACTTACGTGAGCTAGAACCCCCAAGTATGATCAGAAAATCTATGGCAAGGGGACAAGGAGATCATCAACCA GCCTTAGGAACTGCAAAAGTCTGCCCATACATTGGTTAC AGGAGAGATGTAGTCGCTGTGATTGCTAATTGCTTGCATAGAAGCAAAAAAGTGCAGGATG AGGTGAGGCACCTGGATGGGATTATTTTACTCTTGCA GCAGT GTGTTGTTGATGAAG A AAACCCATACTTGAGGGAGTGGGGTCTT TTTGCTGTGAAGAACTTGCTTGAAGGAAATGAGGAAAACCAGAAGGAGGTATCTGGACTTAAGATGCAAGAAGCTGTTATAACTCCAGAGATTGCTGACATAGGTCTAAGAGTGGAGATAGACAAGGAAACAGGACATCCGAAACTGGTTAATAACTGATGATACTTTCCATTTTGATCCTTCATGTTTGAGGTGAAAAGAAAAGGGAGATCAGACTCACGTACCGACGTTCCTCTCATTAACGGAAGCAAACTAATATTGCCGCTGCCTTCTGCACCCCCGGGAAGATAGGTGTTGCTTTTTTTCATTAATGTTAGTCATGTTAATATTGATGGCGAGCATTTGAACCACCGGGATTCAGATACTTTCTTGGAGAAATGAATGCTAATGGTTTTTTACGTTGCATCAAAACAGTGATGTGGTGAGATGTTTCTAGATCCACTCTTATCATAGGCGTCCGT]
[-] EMBL BU673192 [ CCATTCCAGCAACAGCTGTCTCCTTCTCTCTCCGCCGCCGGCGAAACCGCAACGGCGCAGAGGAGAAAATGTGGGAAGCCGAGGAGATCGAGGACGAGGAAACTCTAGAGGCGCTTCTAGAAGCTTCTCGAAGCGCCCAGGGCCGGGCCGCTCTCTCCGACGCCCTCGCCGACACCCTCCACCTCCTGCCGGCCTCCACCCACCGCCTCCTGCTCCTCCGCCTCCGCCTCCTCCGCAACCTCCTCGCCGGCGACGACCTCAACCAGGGCACCTTCGTCCTCCT CTCCGGCCCCGCCGCGGTCGTCTCCTCCGCCCTCTCCTCCCCCTCCGACTCCTCCGACGTCGCGCGCGCGGGCCTCCAGGCGCTGGGCAACGCCGCGCTCGCCGGGGAGCACCACCGCGCCGCCGTCTGGGATGCGCTCTTCCCTGGCTCGCTGCTGGAGCTCGCGCGGGTCAGGGAGAAGGGAGTCCTCGACCCACTGTGCATGGTGATCGACACCTGCTGCTCCG ]
[-] EMBL BI305416 [ tTCCTCCGCAACGTCCTAGCCGGCGACGACCTCAACCAGGGCACTTTCGTCCTCCT CTCAGGCCCCGCCGCGGTCGTCTCCTCCGCCCTCTCCTCCCCCTCCGACTCCTCCGACGTCGCGCGCGCGGGCCTCCAGGCGCTGGGCAACGCCGCGCTCGCCGGGGAGCACCACCGCGCCGCCGTCTGGGATGCGCTCTTCCCTGGCTCGCTGCTGGAGCTCGCGCGGGTCAGGGAGAAGGGAGTCCTCGACCCACTGTGCATGGTGATCGACACCTGCTGCT ]
[-] EMBL BU673443 [ CGCCGGCGACGACCTCAACCAGGGCACCTTCGTCCTCCTGCTCCGGCCCCGCCGCGGTCGTCTCCTCCGCCCTCTCCTCCCCCTCCGACTCCTCCGACGTCGCGCGCGCGGGCCTCCAGGCGCTGGGCAACGCCGCGCTCGCCGGGGAGCACCACCGCGCCGCCGTCTGGGATGCGCTCTTCCCTGGCTCGCTGCTGGAGCTCGCGCGGGTCAGGGAGAAGGGAGTCCTCGACCCACTGTGCATGGTGATCGACACCTGCTGCT ]
[-] EMBL CB619552 [ ACTTGGATATTCATTGGTGCTCTTGAAGGATATATGTGCTTGGGAATCCCCTCCGTCAGACACACAGGCTCCTGTTGACTCACTGATGCAGACTGGTCTTGTAAAGCATCTTCTAACGTACTTACGTGAGCTAGAACCCCCAAGTATGATCAGAAAATCTATGGCAAGGGGACAAGGAGATCATCAACCA GCCTTAGGAACTGCAAAAGTCTGCCCATACATTGGTTAC AGGAGAGATGTAGTCGCTGTGATTGCTAATTGCTTGCATAGAAGCAAAAAAGTGCAGGATG AGGTGAGGCACCTGGATGGGATTATTTTACTCTTGCA GCAGT GTGTTGTTGATGAAG A AAACCCATACTTGAGGGAGTGGGGTCTT TTTGCTGTGAAGAACTTGCTTGAAGGAAATGAGGAAAACCAGAAGGAGGTATCTGGACTTAAGATGCAAGAAGCTGTTATAACTCCAGAGATTGCTGACATAGGTCTAAGAGTGGAGATAGACAAGGAAACAGGACATCCGAAACTGGTTAATAACTGATGATACTTTCCATTTTGATCCTTCATGTTTGAGGTGAAAAGAAAAGGGAGATCAGACTCACGTACCGACGTTCCTCTCATTAACGGAAGCAAACTAATATTGCCGCTGCCTTCTGCACCCCCGGGAAGATAGGTGTTGCTTTTTTTCATTAATGTTAGTCATGTTAATATTGATGGCGAGCATTTGAACCACCGGGATTCAGATACTTTCTTGGAGAAATGAATGCAAATGGTTTTTTACGTTGCATCAA ]
[+] EMBL BI796012 [ GAC AGGAGATCATC ACCACGCC TAGGTAC GC AAAG CTGCCCATACA TGGTTACAAGGAGAGATGTAGTCGCTGTGATTGCTAATTGCTTGCATAGAAGC AAAAAGTGCAGTATGTAGGTGAGGCACCTGGATGGGATTATTTTACTCTTGCACGCAGTGGTGTTGTTGATGAAGCAGAAACCCATACTTGAGGGAGTGGGGTCTTCTTTGCTGTGAAGAACTTGCTTGAAGGAAATGAGGAATACCAGAAGGAGGTATCTGGACTTAAGATCCAAGAA CTGTTATAACTCCAGAGATTGCTGACATAGGTCTAAGAGT ]
consensusID : consensus_10406#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 631 fasta sequence
[CGAGACAAGGGGATCATCAACCAGCCTTAGGAACTGCAAAAGTCTGCCCATACATTGGTTACAGGAGAGATGTAGTCGCTGTGATTGCTAATTGCTTGCATAGAAGCAAAAAAGTGCAGGATGAGGTGAGGCACCTGGATGGGATTATTTTACTCTTGCAGCAGTGTGTTGTTGATGAAGAAAACCCATACTTGAGGGAGTGGGGTCTTTTTGCTGTGAAGAACTTGCTTGAAGGAAATGAGGAAAACCAGAAGGAGGTATCTGGACTTAAGATGCAAGAAGCTGTTATAACTCCAGAGATTGCTGACATAGGTCTAAGAGTGGAGATAGCCAAGGAAACAGGACATCCGAAACTGGTTAATAACTGATGATACTTTCCATTTTGATCCTTCATGTTTGAGGTGAAAAGAAAAGGGAGATCAGACTCACGTACCGACGTTCCTCTCATTAACGGAAGCAAACTAATATTGCCGCTGCCTTTTGCACCCCCGGGAAGATAGGTGTTGCTTTTTTTCATTAATGTTAGTCATGTTAATATTGATGGCGAGCATTTGAACCCCCGGGATTCAGATACTTTCTTGGAGAAATGAATGCAAATGGTTTTTTTCGTTGCAAAAAAAAAAAAAAAAAA]
[-] EMBL CA762634 [CGAGACAAGGGGATCATCAACCAGCCTTAGGAACTGCAAAAGTCTGCCCATACATTGGTTACAGGAGAGATGTAGTCGCTGTGATTGCTAATTGCTTGCATAGAAGCAAAAAAGTGCAGGATGAGGTGAGGCACCTGGATGGGATTATTTTACTCTTGCAGCAGTGTGTTGTTGATGAAGAAAACCCATACTTGAGGGAGTGGGGTCTTTTTGCTGTGAAGAACTTGCTTGAAGGAAATGAGGAAAACCAGAAGGAGGTATCTGGACTTAAGATGCAAGAAGCTGTTATAACTCCAGAGATTGCTGACATAGGTCTAAGAGTGGAGATAGCCAAGGAAACAGGACATCCGAAACTGGTTAATAACTGATGATACTTTCCATTTTGATCCTTCATGTTTGAGGTGAAAAGAAAAGGGAGATCAGACTCACGTACCGACGTTCCTCTCATTAACGGAAGCAAACTAATATTGCCGCTGCCTTTTGCACCCCCGGGAAGATAGGTGTTGCTTTTTTTCATTAATGTTAGTCATGTTAATATTGATGGCGAGCATTTGAACCCCCGGGATTCAGATACTTTCTTGGAGAAATGAATGCAAATGGTTTTTTTCGTTGCAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10406#0 GCCTGCACGGTATCCCCATTCCATAACCATTCCAGCAACAGCTGTCTCCTTCTCTCTCCG 60
consensus_10406#1 ------------------------------------------------------------
consensus_10406#0 CCGCCGGCGAAACCGCAACGGCGCAGAGGAGAAAATGTGGGAAGCCGAGGAGATCGAGGA 120
consensus_10406#1 ------------------------------------------------------------
consensus_10406#0 CGAGGAAACTCTAGAGGCGCTTCTAGAAGCTTCCCGAAGCGCCCAGGGCCGGGCCGCGCT 180
consensus_10406#1 ------------------------------------------------------------
consensus_10406#0 CTCCGACGCCCTCGCCGACACCCTCCACCTCCTGCCGGCCTCCACCCACCGCCTCCTGCT 240
consensus_10406#1 ------------------------------------------------------------
consensus_10406#0 CCTCCGCCTCCGCCTCCTCCGCAACCTCCTCGCCGGCGACGACCTCAACCAGGGCACCTT 300
consensus_10406#1 ------------------------------------------------------------
consensus_10406#0 CGTCCTCCTCTCCGGCCCCGCCGCGGTCGTCTCCTCCGCCCTCTCCTCCCCCTCCGACTC 360
consensus_10406#1 ------------------------------------------------------------
consensus_10406#0 CTCCGACGTCGCGCGCGCGGGCCTCCAGGCGCTGGGCAACGCCGCGCTCGCCGGGGAGCA 420
consensus_10406#1 ------------------------------------------------------------
consensus_10406#0 CCACCGCGCCGCCGTCTGGGATGCGCTCTTCCCTGGCTCGCTGCTGGAGCTCGCGCGGGT 480
consensus_10406#1 ------------------------------------------------------------
consensus_10406#0 CAGGGAGAAGGGAGTCCTCGACCCACTGTGCATGGTGATCGACACCTGCTGCTCCGGCGA 540
consensus_10406#1 ------------------------------------------------------------
consensus_10406#0 AGGCGGCCGCGGGAGGCTCGAGGAGCTCTGCCACGAGGAGTTAGGGCTGCCCATACTTGT 600
consensus_10406#1 ------------------------------------------------------------
consensus_10406#0 GGAAATCGTCACTACTGCCTGGCAAGTGGGGCATGATGAAGAATGGTTAGAATGGCTTCT 660
consensus_10406#1 ------------------------------------------------------------
consensus_10406#0 CTTCAAAATCTGTGTTGAGGAGCAAAAGTTTGAAACATTGTTTGTAGCTTTATGCTCACG 720
consensus_10406#1 ------------------------------------------------------------
consensus_10406#0 CAATGATGCTGAGCACAGTGATGGTGATGAATGCAAAACTGAGTTTAATGCTAAGCATGC 780
consensus_10406#1 ------------------------------------------------------------
consensus_10406#0 ATATCTTTTGGGTAAATTGTCAAAATGTTTGGCTAACCGACCTAAAGAAGTCAGTGTATC 840
consensus_10406#1 ------------------------------------------------------------
consensus_10406#0 GATCAGTTTTGCACTTGATATTTTCAATGCACAGAAGCATGCTGCTGAGATTGTGGATTT 900
consensus_10406#1 ------------------------------------------------------------
consensus_10406#0 TACTTGCCGAGTTAACTCTCCTCTTCCAACTGGTCACCCTGCAATTGATGTACTTGGATA 960
consensus_10406#1 ------------------------------------------------------------
consensus_10406#0 TTCATTGGTGCTCTTGAAGGATATATGTGCTTGGGAATCCCCTCCGTCAGACACACAGGC 1020
consensus_10406#1 ------------------------------------------------------------
consensus_10406#0 TCCTGTTGACTCACTGATGCAGACTGGTCTTGTAAAGCATCTTCTAACGTACTTACGTGA 1080
consensus_10406#1 ------------------------------------------------------------
consensus_10406#0 GCTAGAACCCCCAAGTATGATCAGAAAATCTATGGCAAGGGGACAAGGAGATCATCAACC 1140
consensus_10406#1 --------------------------------------CGAGACAAGGGGATCATCAACC 22
* ******* ***********
consensus_10406#0 AGCCTTAGGAACTGCAAAAGTCTGCCCATACATTGGTTACAGGAGAGATGTAGTCGCTGT 1200
consensus_10406#1 AGCCTTAGGAACTGCAAAAGTCTGCCCATACATTGGTTACAGGAGAGATGTAGTCGCTGT 82
************************************************************
consensus_10406#0 GATTGCTAATTGCTTGCATAGAAGCAAAAAAGTGCAGGATGAGGTGAGGCACCTGGATGG 1260
consensus_10406#1 GATTGCTAATTGCTTGCATAGAAGCAAAAAAGTGCAGGATGAGGTGAGGCACCTGGATGG 142
************************************************************
consensus_10406#0 GATTATTTTACTCTTGCAGCAGTGTGTTGTTGATGAAGAAAACCCATACTTGAGGGAGTG 1320
consensus_10406#1 GATTATTTTACTCTTGCAGCAGTGTGTTGTTGATGAAGAAAACCCATACTTGAGGGAGTG 202
************************************************************
consensus_10406#0 GGGTCTTTTTGCTGTGAAGAACTTGCTTGAAGGAAATGAGGAAAACCAGAAGGAGGTATC 1380
consensus_10406#1 GGGTCTTTTTGCTGTGAAGAACTTGCTTGAAGGAAATGAGGAAAACCAGAAGGAGGTATC 262
************************************************************
consensus_10406#0 TGGACTTAAGATGCAAGAAGCTGTTATAACTCCAGAGATTGCTGACATAGGTCTAAGAGT 1440
consensus_10406#1 TGGACTTAAGATGCAAGAAGCTGTTATAACTCCAGAGATTGCTGACATAGGTCTAAGAGT 322
************************************************************
consensus_10406#0 GGAGATAGACAAGGAAACAGGACATCCGAAACTGGTTAATAACTGATGATACTTTCCATT 1500
consensus_10406#1 GGAGATAGCCAAGGAAACAGGACATCCGAAACTGGTTAATAACTGATGATACTTTCCATT 382
******** ***************************************************
consensus_10406#0 TTGATCCTTCATGTTTGAGGTGAAAAGAAAAGGGAGATCAGACTCACGTACCGACGTTCC 1560
consensus_10406#1 TTGATCCTTCATGTTTGAGGTGAAAAGAAAAGGGAGATCAGACTCACGTACCGACGTTCC 442
************************************************************
consensus_10406#0 TCTCATTAACGGAAGCAAACTAATATTGCCGCTGCCTTCTGCACCCCCGGGAAGATAGGT 1620
consensus_10406#1 TCTCATTAACGGAAGCAAACTAATATTGCCGCTGCCTTTTGCACCCCCGGGAAGATAGGT 502
************************************** *********************
consensus_10406#0 GTTGCTTTTTTTCATTAATGTTAGTCATGTTAATATTGATGGCGAGCATTTGAACCACCG 1680
consensus_10406#1 GTTGCTTTTTTTCATTAATGTTAGTCATGTTAATATTGATGGCGAGCATTTGAACCCCCG 562
******************************************************** ***
consensus_10406#0 GGATTCAGATACTTTCTTGGAGAAATGAATGCTAATGGTTTTTTACGTTGCATCAAAACA 1740
consensus_10406#1 GGATTCAGATACTTTCTTGGAGAAATGAATGCAAATGGTTTTTTTCGTTGCAAAAAAAAA 622
******************************** *********** ******* **** *
consensus_10406#0 GTGATGTGGTGAGATGTTTCTAGATCCACTCTTATCATAGGCGTCCGT 1788
consensus_10406#1 AAAAAAAAA--------------------------------------- 631
*
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||