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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10408#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1377 fasta sequence
[ACACATGTGACATGTGCAGGTGCAGCGTACTCAGTGCTTCAGTATTGTAGCGAGTCGGAGTCAGTAGAGCAGGCAGCCAAGAAATGGCCGATGCGCACGGTCACCGCCGGCGGGTGGCCCTGCCGTGCGCGGTGCGCCTCCGGCTCTGCCTCCTCGAGGCCGCCATCGACGCGACGCAGCGCCGGGACGGCGCCA-TCAACCGTCCTCTCTTCTCCCTGTACGACCGGCGGGCGCCCGCCGACCCGCGGCCGGACGCCGCCGGCGTGAGCTCCACGGACGTCACCGTCGACGCGTCCCGCGGCCTCTGGGCGCGCGTCTTCACCCCTACCGCGCCGGAGCACGAGCACTCCTCGTCGTCGTCGACGACGACGCCGCGCCCCGTCATCGTCTACTTCCACGGCGGCGGCTTCGCGATGTTCTCGGCGGCCTCCCGCCCGTTCGACACCCACTGCCGCACGCTCTGCGCCGGGGTCGGCGCCGTCGTCGTCTCCGTCGACTACCGCCTCGCCCCCGAGCACCGGTTCCCCGCCGCGTACGACGACGGGGAGGCCGTCCTCCGCTACCTCGCCACCACCGGCCTCCGCGACGAGCACGGCGTCCCCGTGGACCTCTCCGCCTGCTTCCTCGCGGGAGACAGCGCCGGCGGCAACATCGCGCACCACGTGGCCCAGCGCTGGACGACGACGTCGGCGGCGACTCCGCCGCCTCCGTCAGACAACCCCGTCCACCTCGCCGGTGTGATACTCCTGGAGCCGTACTTCGGCGGCGAGGAGCGGACCAAGGCAGAGCGCGCGCTGGAGGGCGTGGCGCCGGTGGTGAAC-ATCCGGCGGTCGGACCGGTGGTGG-AGGGCGTTCTTG-CCGGA-GGGGGCCGA-CCGGAACCACCCGGCGGCGCAC-GTCACCGGCGACGCGGGGCCGGA-GCCCGAGCTGCAAGAAGCGTTCCCGCCGGCGATGGTGGTCGTCGGGGGCCTC-GACCCGCTG-CAAGACTGGGACCGGAGGTACGCCGGCATGCTGCGGCGGAAGGGGAAGGCGGTGCGGGTGGTGGAGTTCCCGGAGGCCATACACGCCTTCTACTTCTTCCCGGAGTTCGCCGGCGACATCCGGAAGCTCGTCGGTGAAATCAGGGCGTTCGTGGAAGACAGCATCATGTCCAAGCAATCCA-TTGCTTAGCTGTGATTACTCCAACTAGCTATAAATTATCGGAGTGGTTCGTATTTATATAATTGTAGTACTTATCTTTTGAGGGAACTTAATTATAGTACTTATAATGGAGTAATTACTCTCCATAGATGTTTTCGGTTCGTTCAAACT-TTTGAAATTTGCTGATTACTCACTCTGTTCAGTATTGAGTTTGACTAAATTGCATTAGCGTTACAAATTT]
[+] EMBL AK070763 [ACACATGTGACATGTGCAGGTGCAGCGTACTCAGTGCTTCAGTATTGTAGCGAGTCGGAGTCAGTAGAGCAGGCAGCCAAGAAATGGCCGATGCGCACGGTCACCGCCGGCGGGTGGCCCTGCCGTGCGCGGTGCGCCTCCGGCTCTGCCTCCTCGAGGCCGCCATCGACGCGACGCAGCGCCGGGACGGCGCCA TCAACCGTCCTCTCTTCTCCCTGTACGACCGGCGGGCGCCCGCCGACCCGCGGCCGGACGCCGCCGGCGTGAGCTCCACGGACGTCACCGTCGACGCGTCCCGCGGCCTCTGGGCGCGCGTCTTCACCCCTACCGCGCCGGAGCACGAGCACTCCTCGTCGTCGTCGACGACGACGCCGCGCCCCGTCATCGTCTACTTCCACGGCGGCGGCTTCGCGATGTTCTCGGCGGCCTCCCGCCCGTTCGACACCCACTGCCGCACGCTCTGCGCCGGGGTCGGCGCCGTCGTCGTCTCCGTCGACTACCGCCTCGCCCCCGAGCACCGGTTCCCCGCCGCGTACGACGACGGGGAGGCCGTCCTCCGCTACCTCGCCACCACCGGCCTCCGCGACGAGCACGGCGTCCCCGTGGACCTCTCCGCCTGCTTCCTCGCGGGAGACAGCGCCGGCAGCAACATCGCGCACCACGTGGCCCAGCGCTGGACGACGACGTCGGCGGCGACTCCGCCGCCTCCGTCAGACAACCCCGTCCACCTCGCCGGTGTGATACTCCTGGAGCCGTACTTCGGCGGCGAGGAGCGGACCAAGGCAGAGCGCGCGCTGGAGGGCGTGGCGCCGGTGGTGAAC ATCCGGCGGTCGGACCGGTGGTGG AGGGCGTTCTTG CCGGA GGGGGCCGA CCGGAACCACCCGGCGGCGCAC GTCACCGGCGACGCGGGGCCGGA GCCCGAGCTGCAAGAAGCGTTCCCGCCGGCGATGGTGGTCGTCGGGGGCCTC GACCCGCTG CAAGACTGGGACCGGAGGTACGCCGGCATGCTGCGGCGGAAGGGGAAGGCGGTGCGGGTGGTGGAGTTCCCGGAGGCCATACACGCCTTCTACTTCTTCCCGGAGTTCGCCGGCGACATCCGGAAGCTCGTCGGTGAAATCAGGGCGTTCGTGGAAGACAGCATCATGTCCAAGCAATCCA TTGCTTAGCTGTGATTACTCCAACTAGCTATAAATTATCGGAGTGGTTCGTATTTATATAATTGTAGTACTTATCTTTTGAGGGAACTTAATTATAGTACTTATAATGGAGTAATTACTCTCCATAGATGTTTTCGGTTCGTTCAAACT TTTGAAATTTGCTGATTACTCACTCTGTTCAGTATTGAGTTTGACTAAATTG ]
[+] EMBL AK099262 [ CGTACTCAGTGCTTCAGTATTGTAGCGAGTCGGAGTCAGTAGAGCAGGCAGCCAAGAAATGGCCGATGCGCACGGTCACCGCCGGCGGGTGGCCCTGCCGTGCGCGGTGCGCCTCCGGCTCTGCCTCCTCGAGGCCGCCATCGACGCGACGCAGCGCCGGGACGGCGCCA TCAACCGTCCTCTCTTCTCCCTGTACGACCGGCGGGCGCCCGCCGACCCGCGGCCGGACGCCGCCGGCGTGAGCTCCACGGACGTCACCGTCGACGCGTCCCGCGGCCTCTGGGCGCGCGTCTTCACCCCTACCGCGCCGGAGCACGAGCACTCCTCGTCGTCGTCGACGACGACGCCGCGCCCCGTCATCGTCTACTTCCACGGCGGCGGCTTCGCGATGTTCTCGGCGGCCTCCCGCCCGTTCGACACCCACTGCCGCACGCTCTGCGCCGGGGTCGGCGCCGTCGTCGTCTCCGTCGACTACCGCCTCGCCCCCGAGCACCGGTTCCCCGCCGCGTACGACGACGGGGAGGCCGTCCTCCGCTACCTCGCCACCACCGGCCTCCGCGACGAGCACGGCGTCCCCGTGGACCTCTCCGCCTGCTTCCTCGCGGGAGACAGCGCCGGCGGCAACATCGCGCACCACGTGGCCCAGCGCTGGACGACGACGTCGGCGGCGACTCCGCCGCCTCCGTCAGACAACCCCGTCCACCTCGCCGGTGTGATACTCCTGGAGCCGTACTTCGGCGGCGAGGAGCGGACCAAGGCAGAGCGCGCGCTGGAGGGCGTGGCGCCGGTGGTGAAC ATCCGGCGGTCGGACCGGTGGTGG AGGGTGTTCTTG CCGGA GGGGGCCGA CCGGAACCACCCGGCGGCGCAC GTCACCGGCGACGCGGGGCCGGA GCCCGAGCTGCAAGAAGCGTTCCCGCCGGCGATGGTGGTCGTCGGGGGCCTC GACCCGCTG CAAGACTGGGACCGGAGGTACGCCGGCATGCTGCGGCGGAAGGGGAAGGCGGTGCGGGTGGTGGAGTTCCCGGAGGCCATACACGCCTTCTACTTCTTCCCGGAGTTCGCCGGCGACATCCGGAAGCTCGTCGGTGAAATCAGGGCGTTCGTGGAAGACAGCATCATGTCCAAGCAATCCA TTGCTTAGCTGTGATTACTCCAACTAGCTATAAATTATCGGAGTGGTTCGTATTTATATAATTGTAGTACTTATCTTTTGAGGGAACTTAATTATAGTACTTATAATGGAGTAATTACTCTCCATAGATGTTTTCGGTTCGTTCAAACT TTTGAAATTTGCTGATTACTCACTCTGTTCAGTATTGAGTTTGACTAAATTGCATTAGCGTTACAAATTT]
[+] EMBL AK106075 [ TTCAGTATTGTAGCGAGTCGGAGTCAGTAGAGCAGGCAGCCAAGAAATGGCCGATGCGCACGGTCACCGCCGGCGGGTGGCCCTGCCGTGCGCGGTGCGCCTCCGGCTCTGCCTCCTCGAGGCCGCCATCGACGCGACGCAGCGCCGGGACGGCGCCA TCAACCGTCCTCTCTTCTCCCTGTACGACCGGCGGGCGCCCGCCGACCCGCGGCCGGACGCCGCCGGCGTGAGCTCCACGGACGTCACCGTCGACGCGTCCCGCGGCCTCTGGGCGCGCGTCTTCACCCCTACCGCGCCGGAGCACGAGCACTCCTCGTCGTCGTCGACGACGACGCCGCGCCCCGTCATCGTCTACTTCCACGGCGGCGGCTTCGCGATGTTCTCGGCGGCCTCCCGCCCGTTCGACACCCACTGCCGCACGCTCTGCGCCGGGGTCGGCGCCGTCGTCGTCTCCGTCGACTACCGCCTCGCCCCCGAGCACCGGTTCCCCGCCGCGTACGACGACGGGGAGGCCGTCCTCCGCTACCTCGCCACCACCGGCCTCCGCGACGAGCACGGCGTCCCCGTGGACCTCTCCGCCTGCTTCCTCGCGGGAGACAGCGCCGGCGGCAACATCGCGCACCACGTGGCCCAGCGCTGGACGACGACGTCGGCGGCGACTCCGCCGCCTCCGTCAGACAACCCCGTCCACCTCGCCGGTGTGATACTCCTGGAGCCGTACTTCGGCGGCGAGGAGCGGACCAAGGCAGAGCGCGCGCTGGAGGGCGTGGCGCCGGTGGTGAAC ATCCGGCGGTCGGACCGGTGGTGG AGGGCGTTCTTG CCGGA GGGGGCCGA CCGGAACCACCCGGCGGCGCAC GTCACCGGCGACGCGGGGCCGGA GCCCGAGCTGCAAGAAGCGTTCCCGCCGGCGATGGTGGTCGTCGGGGGCCTC GACCCGCTG CAAGACTGGGACCGGAGGTACGCCGGCATGCTGCGGCGGAAGGGGAAGGCGGTGCGGGTGGTGGAGTTCCCGGAGGCCATACACGCCTTCTACTTCTTCCCGGAGTTCGCCGGCGACATCCGGAAGCTCGTCGGTGAAATCAGGGCGTTCGTGGAAGACAGCATCATGTCCAAGCAATCCA TTGCTTAGCTGTGATTACTCCAACTAGCTATAAATTATCGGAGTGGTTCGTATTTATATAATTGTAGTACTTATCTTTTGAGGGAACTTAATTATAGTACTTATAATGGAGTAATTACTCTCCATAGATGTTTTCGGTTCGTTCAAACT TTTGAAATTTGCTGATTACTCAC ]
[+] EMBL C91665 [ AGTCAGTAGAGCAGGCAGCCAAGAAATGGCCGATGCGCACGGTCACCGCCGGCGGGTGGCCCTGCCGTGCGCGGTGCNCCTCCGGCTCTGCCTCCTCGAGGCCGCCATCGACGCGACGCAGCGCCGGGAC GNGCAATTCAACCGTCCTCTCTTCTCCCTGTACGACCGGCGGGCGCCCG NGACCCGCGGCCGGACGCCGCCGGGTTGAGCTCCACGGACGTCACCGTCGACGCGTCCCG GGCCTCTGGGCGCGCGTCTTCACCCCTACCGCGCCGGAGCACGAACACTCCTCGTCGTCGTCGAaaanaagcc ]
[+] EMBL BQ907018 [ GGTGGTGTACTATCCGGCGGTCGGACCGGTGGTGGTAGGGCGTTCTTGTCCGGATGGGGNCCGATCCGGAACCACCCGGCGGCGCAC GTCACCGGCGACNCGGGGCCGGATGCCCGAGCTGCAAGAAGCGTTCCCGCCGGCGATGGTGGTCGTCGGGGGCCTCTGACCCGCTGTCAGGACTGGGACCGGAGGTACGCCGGCATGCTGCGGCAGAAGGGGAA GCGGTGCGGGTGGTGGAGTTCCCGGAGGCCATACACGCCTTCTACTTCTTCCCCGAGTTCGCCGGCGACATCCGGAAGCTCGTCGGTGAAATCAGGGCGTTCGTAGAAGAGAGCATCATGTCCAAGCAGTCCA TTGCTTAGCTGTGATTACTCCAACTAGCTATAAATTATCGGAGTAGTTCGTATTTATATAATTGTAGTACTTTTCTTTTGAGGGAACTTAATTATAGTACNTATAATGGAGTAATTACTCTCCGTAGATGTTTTCGGTTCGTTCAAACTCTTTGAAATTTGCTGATTAa ]
[+] EMBL BI808398 [ GTGGTGAAC ATCCGGCGTTCGGACC GTTGTGG AGGGCGTTCTTG CCGGA GGGGCCGA CCGGAACCACCC GCGGCGCACAGTCACCGGCGAC CGGGGCCGGA GCCCGAGCTGCAAGAAGCGTTCCCGCCGGCGATGGTGGTCGTC GGGGCCTC GACCCGCTG CAGGACTGGGACCGGAGGTACGCCGGCATGCTGC GCAGAAGGGGAA GCGGTGCGGGTGGTGGAGTTCCCGGAGGCCATACACGCCTTCTACTTCTTCCCCGAGTTCGCCGGCGACATCCGGAAGCTCGTCGGTGAAATCAGGGCGTTCGTAGAAGAGAGCATCATGTCCAA CCCTCCACTTGCTTAGCTGTGATTACTCCAACTAGCTATAAATTATCGGAGTAGTTCGTATTTATATAATTGTAGTACTTTTCTTTTGAGGGAACTTAATTATAGTACTTATAATGGAGTAATTACTCTCCGTAGATGTTTTCGGTTCGTTCCACCT TTTGAAATTTGCTGATTAaaaa ]
consensusID : consensus_10408#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence
[GCCATACNCGCCTTCTACTTCTTCCCGGNGTTCGCCGGCGACATCCGGAAGCTCGTCGGTGAAATCAGGGCGTTCGTGGAAGACAGCATCATGTCCAAGCAATCCATTGCTTAGCTGTGATTACTCCAACTAGCTATAAATTATCGGAGTGGTTCGTATTTATATAATTGTAGTACTTATCTTTTGAGGGAACTTAATTATAGTACTTATAATGGAGTAATTACTNTCCATAGATGTTTTCGGTTCGTTCAAACTTTTGAAATTTGCTGATTACTCACTCTGTTCAGTATTGAGTTTGACTAAAAAAAAAAAAAAAAANANANAAAAAANA]
[+] EMBL AU029663 [GCCATACNCGCCTTCTACTTCTTCCCGGNGTTCGCCGGCGACATCCGGAAGCTCGTCGGTGAAATCAGGGCGTTCGTGGAAGACAGCATCATGTCCAAGCAATCCATTGCTTAGCTGTGATTACTCCAACTAGCTATAAATTATCGGAGTGGTTCGTATTTATATAATTGTAGTACTTATCTTTTGAGGGAACTTAATTATAGTACTTATAATGGAGTAATTACTNTCCATAGATGTTTTCGGTTCGTTCAAACTTTTGAAATTTGCTGATTACTCACTCTGTTCAGTATTGAGTTTGACTAAAAAAAAAAAAAAAAANANANAAAAAANA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10408#0 ACACATGTGACATGTGCAGGTGCAGCGTACTCAGTGCTTCAGTATTGTAGCGAGTCGGAG 60
consensus_10408#1 ------------------------------------------------------------
consensus_10408#0 TCAGTAGAGCAGGCAGCCAAGAAATGGCCGATGCGCACGGTCACCGCCGGCGGGTGGCCC 120
consensus_10408#1 ------------------------------------------------------------
consensus_10408#0 TGCCGTGCGCGGTGCGCCTCCGGCTCTGCCTCCTCGAGGCCGCCATCGACGCGACGCAGC 180
consensus_10408#1 ------------------------------------------------------------
consensus_10408#0 GCCGGGACGGCGCCATCAACCGTCCTCTCTTCTCCCTGTACGACCGGCGGGCGCCCGCCG 240
consensus_10408#1 ------------------------------------------------------------
consensus_10408#0 ACCCGCGGCCGGACGCCGCCGGCGTGAGCTCCACGGACGTCACCGTCGACGCGTCCCGCG 300
consensus_10408#1 ------------------------------------------------------------
consensus_10408#0 GCCTCTGGGCGCGCGTCTTCACCCCTACCGCGCCGGAGCACGAGCACTCCTCGTCGTCGT 360
consensus_10408#1 ------------------------------------------------------------
consensus_10408#0 CGACGACGACGCCGCGCCCCGTCATCGTCTACTTCCACGGCGGCGGCTTCGCGATGTTCT 420
consensus_10408#1 ------------------------------------------------------------
consensus_10408#0 CGGCGGCCTCCCGCCCGTTCGACACCCACTGCCGCACGCTCTGCGCCGGGGTCGGCGCCG 480
consensus_10408#1 ------------------------------------------------------------
consensus_10408#0 TCGTCGTCTCCGTCGACTACCGCCTCGCCCCCGAGCACCGGTTCCCCGCCGCGTACGACG 540
consensus_10408#1 ------------------------------------------------------------
consensus_10408#0 ACGGGGAGGCCGTCCTCCGCTACCTCGCCACCACCGGCCTCCGCGACGAGCACGGCGTCC 600
consensus_10408#1 ------------------------------------------------------------
consensus_10408#0 CCGTGGACCTCTCCGCCTGCTTCCTCGCGGGAGACAGCGCCGGCGGCAACATCGCGCACC 660
consensus_10408#1 ------------------------------------------------------------
consensus_10408#0 ACGTGGCCCAGCGCTGGACGACGACGTCGGCGGCGACTCCGCCGCCTCCGTCAGACAACC 720
consensus_10408#1 ------------------------------------------------------------
consensus_10408#0 CCGTCCACCTCGCCGGTGTGATACTCCTGGAGCCGTACTTCGGCGGCGAGGAGCGGACCA 780
consensus_10408#1 ------------------------------------------------------------
consensus_10408#0 AGGCAGAGCGCGCGCTGGAGGGCGTGGCGCCGGTGGTGAACATCCGGCGGTCGGACCGGT 840
consensus_10408#1 ------------------------------------------------------------
consensus_10408#0 GGTGGAGGGCGTTCTTGCCGGAGGGGGCCGACCGGAACCACCCGGCGGCGCACGTCACCG 900
consensus_10408#1 ------------------------------------------------------------
consensus_10408#0 GCGACGCGGGGCCGGAGCCCGAGCTGCAAGAAGCGTTCCCGCCGGCGATGGTGGTCGTCG 960
consensus_10408#1 ------------------------------------------------------------
consensus_10408#0 GGGGCCTCGACCCGCTGCAAGACTGGGACCGGAGGTACGCCGGCATGCTGCGGCGGAAGG 1020
consensus_10408#1 ------------------------------------------------------------
consensus_10408#0 GGAAGGCGGTGCGGGTGGTGGAGTTCCCGGAGGCCATACACGCCTTCTACTTCTTCCCGG 1080
consensus_10408#1 --------------------------------GCCATACNCGCCTTCTACTTCTTCCCGG 28
******* ********************
consensus_10408#0 AGTTCGCCGGCGACATCCGGAAGCTCGTCGGTGAAATCAGGGCGTTCGTGGAAGACAGCA 1140
consensus_10408#1 NGTTCGCCGGCGACATCCGGAAGCTCGTCGGTGAAATCAGGGCGTTCGTGGAAGACAGCA 88
***********************************************************
consensus_10408#0 TCATGTCCAAGCAATCCATTGCTTAGCTGTGATTACTCCAACTAGCTATAAATTATCGGA 1200
consensus_10408#1 TCATGTCCAAGCAATCCATTGCTTAGCTGTGATTACTCCAACTAGCTATAAATTATCGGA 148
************************************************************
consensus_10408#0 GTGGTTCGTATTTATATAATTGTAGTACTTATCTTTTGAGGGAACTTAATTATAGTACTT 1260
consensus_10408#1 GTGGTTCGTATTTATATAATTGTAGTACTTATCTTTTGAGGGAACTTAATTATAGTACTT 208
************************************************************
consensus_10408#0 ATAATGGAGTAATTACTCTCCATAGATGTTTTCGGTTCGTTCAAACTTTTGAAATTTGCT 1320
consensus_10408#1 ATAATGGAGTAATTACTNTCCATAGATGTTTTCGGTTCGTTCAAACTTTTGAAATTTGCT 268
***************** ******************************************
consensus_10408#0 GATTACTCACTCTGTTCAGTATTGAGTTTGACTAAATTGCATTAGCGTTACAAATTT--- 1377
consensus_10408#1 GATTACTCACTCTGTTCAGTATTGAGTTTGACTAAAAAAAAAAAAAAAAANANANAAAAA 328
************************************ * * * * *
consensus_10408#0 ---
consensus_10408#1 ANA 331
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||