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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10423#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1281 fasta sequence
[CGCTCCTCCCCTCCCACTCCGTCGTGGCCGGCAGCGGGAGCAGCCGCTGCCTCCTCCGCCGCCGCCGCCGCCGCCGCGCGCGCCTCCGCGAATCCTCTTCCTCCTCCTCTCTCCTCGCCGCCGCCCAGGCCCAGCCGCAGGAGCATGGCCAGCGCCGGCGTCGGACGCGGCCGGGTCCGCGTCGCGGTCGTCGGCGACGTGCATAATGATTGGACCCTTGAGGAAGACTCAAAAGCCCTACATTTTCTCCAGCCAGATTTGGTACTTTTTACAGGTGATTATGGCAACGAGAATGTTCAACTTGTTAAAAGCATTTCAGATCTTCAGCTCCCCAAAGCAGCTATTCTTGGGAATCATGACTGTTGGCACACGTATCAGTTTTCAGAGAAGAAGGTAGATCGTGTCCAGCTTCAGCTAGAGAGCCTTGGTGAGCAGCATGTTGGGTACAAATGTTTGGATTTTCCAACAATAAAGCTGAGTGTTGTTGGTGGACGACCATTTTCCTGCGGGGGTAATAGGATATTTAGACCAAAGCTTCTGTCAAAATGGTTGGTATGGTGTCAATGATATGGCTGAAAGTGCAAAGAGGATATATGATGCTGCTACAAATGCACCAAAGGAGCATGCTGTCATATTACTGGCACACAATGGGCCAACAGGTCTAGGCTCAAGAATGGAGGATATTTGTGGGCGGGATTGGGTTGCTGGTGGTGGTGATCATGGTGATCCAGATCTGGAGCAAGCCATATCTGATCTGCAAAGAGAAACCGGAGTTTCGATACCGCTGGTCGTGTTCGGTCACATGCACAAGAGCCTCGCCTACGGGAGAGGCCTTCGGAAGATGATTGCCTTTGGAGCTAACCGGACTATATATCTGAACGGCGCCGTTGTGCCTAGAGTGAATCATGCGCAATCAAGCAGGCAGCCTGCAATCTCCACAAGCGAAAAGACTGGGCTCGAAGGATTAACAGGACTGATGGTTCCGACATCGCGGGCGTTCACCATTGTTGATCTCTTTGAAGGCGCCGTTGAGAAAATCTCCGAGGTCTGGGTGACGGTGGGTGATGCCAGGACGGAGCTTGAGCAGGAATTAGTCTTGTACAAGCAACCACGTGAGCACATATGACTTCCACAAACTGGTACCGAAACTAAGTACTCCGTACATGAATGTAAATGTGATACTAGTATGATCCGAATTTCGCAATACAGAGAAGTACAAAACGCACTGTCAAAATGTCCGTGGAGTGAAGTAATGCAATGTAAATTCGCTGAAAAAAAGGA]
[+] EMBL CB654848 [CGCTCCTCCCCTCCCACTCCGTCGTGGCCGGCAGCGGGAGCAGCCGCTGCCTCCTCCGCCGCCGCCGCCGCCGCCGCGCGCGCCTCCGCGAATCCTCTTCCTCCTCCTCTCTCCTCGCCGCCGCCCAGGCCCAGCCGCAGGAGCATGGCCAGCGCCGGCGTCGGACGCGGCCGGGTCCGCGTCGCGGTCGTCGGCGACGTGCATAATGATTGGACCCTTGAGGAAGACTCAAAAGCCCTACATTTTCTCCAGCCAGATTTGGTACTTTTTACAGGTGATTATGGCAACGAGAATGTTCAACTTGTTAAAAGCATTTCAGATCTTCAGCTCCCCAAAGCAGCTATTCTTGGGAATCATGACTGTTGGCACACGTATCAGTTTTCAGAGAAGAAGGTAGATCGTGTCCAGCTTCAGCTAGAGAGCCTTGGTGAGCAGCATGTTGGGTACAAATGTTTGGATTTTCCAACAATAAAGCTGAGTGTTGTTGGTGGACGACCATTTTCCTGCGGGGGTAATAGGATATTTAGACCAAAGCTTCTGTCAAAATGGTTGGTATGGTGTCAATGATATGGCTGAAAGTGCAAAGAGGATATATGATGCTGCTACAAATGCACCAAAGGAGCATGCTGTCATATTACTGGCACACAATGGGCCAACAGGTCTAGGCTCAAGAATGGAGGATATTTGTGGGCGGGATTGGGTTGCTGGTGGTGGTGATCATGGTGATCCAGATCTGGAGCAAGCCATATCTGATCTGCAAAGAG AACCGGAGTTT ]
[+] EMBL CB637445 [ TCCCCTCCCACTCCGTCGTGGCCGGCAGCGGGAGCAGCCGCTGCCTCCTCCGCCGCCGCCGCCGCCGCCGCGCGCGCCTCCGCGAATCCTCTTCCTCCTCCTCTCTCCTCGCCGCCGCCCAGGCCCAGCCGCAGGAGCATGGCCAGCGCCGGCGTCGGACGCGGCCGGGTCCGCGTCGCGGTCGTCGGCGACGTGCATAATGATTGGACCCTTGAGGAAGACTCAAAAGCCCTACATTTTCTCCAGCCAGATTTGGTACTTTTTACAGGTGATTATGGCAACGAGAATGTTCAACTTGTTAAAAGCATTTCAGATCTTCAGCTCCCCAAAGCAGCTATTCTTGGGAATCATGACTGTTGGCACACGTATCAGTTTTCAGAGAAGAAGGTAGATCGTGTCCAGCTTCAGCTAGAGAGCCTTGGTGAGCAGCATGTTGGGTACAAATGTTTGGATTTTCCAACAATAAAGC ]
[+] EMBL CB637444 [ TCCCCTCCCACTCCGTCGTGGCCGGCAGCGGGAGCAGCCGCTGCCTCCTCCGCCGCCGCCGCCGCCGCCGCGCGCGCCTCCGCGAATCCTCTTCCTCCTCCTCTCTCCTCGCCGCCGCCCAGGCCCAGCCGCAGGAGCATGGCCAGCGCCGGCGTCGGACGCGGCCGGGTCCGCTTTTCGGTCGTCGGCGACGTGCATAATGATTGGACCCTTGAGGAAGACTCAAAAGCCCTACATTTTCTCCAGCCAGATTTGGTACTTTTTACAGGTGATTATGGCAACGAGAATGTTCAACTTGTTAAAAGCATTTCAGATCTTCAGCTCCCCAAAGCAGCTATTCTTGGGAATCATGACTGTTGGCACACGTATCAGTTTTCAGAGAAGAAGGTAGATCGTGTCCAGCTTCAGCTAGAGAGCCTTGGTGAGCAGCATGTTGGGTACAAATGTTTGGATTCTCCAACAATA ]
[+] EMBL AK068745 [ CCTCCCACTCCGTCGTGGCCGGCAGCGGGAGCAGCCGCTGCCTCCTCCGCCGCCGCCGCCGCCGCCGCGCGCGCCTCCGCGAATCCTCTTCCTCCTCCTCTCTCCTCGCCGCCGCCCAGGCCCAGCCGCAGGAGCATGGCCAGCGCCGGCGTCGGACGCGGCCGGGTCCGCGTCGCGGTCGTCGGCGACGTGCATAATGATTGGACCCTTGAGGAAGACTCAAAAGCCCTACATTTTCTCCAGCCAGATTTGGTACTTTTTACAGGTGATTATGGCAACGAGAATGTTCAACTTGTTAAAAGCATTTCAGATCTTCAGCTCCCCAAAGCAGCTATTCTTGGGAATCATGACTGTTGGCACACGTATCAGTTTTCAGAGAAGAAGGTAGATCGTGTCCAGCTTCAGCTAGAGAGCCTTGGTGAGCAGCATGTTGGGTACAAATGTTTGGATTTTCCAACAATAAAGCTGAGTGTTGTTGGTGGACGACCATTTTCCTGCGGGGGTAATAGGATATTTAGACCAAAGCTTCTGTCAAAA TGGTATGGTGTCAATGATATGGCTGAAAGTGCAAAGAGGATATATGATGCTGCTACAAATGCACCAAAGGAGCATGCTGTCATATTACTGGCACACAATGGGCCAACAGGTCTAGGCTCAAGAATGGAGGATATTTGTGGGCGGGATTGGGTTGCTGGTGGTGGTGATCATGGTGATCCAGATCTGGAGCAAGCCATATCTGATCTGCAAAGAGAAACCGGAGTTTCGATACCGCTGGTCGTGTTCGGTCACATGCACAAGAGCCTCGCCTACGGGAGAGGCCTTCGGAAGATGATTGCCTTTGGAGCTAACCGGACTATATATCTGAACGGCGCCGTTGTGCCTAGAGTGAATCATGCGCAATCAAGCAGGCAGCCTGCAATCTCCACAAGCGAAAAGACTGGGCTCGAAGGATTAACAGGACTGATGGTTCCGACATCGCGGGCGTTCACCATTGTTGATCTCTTTGAAGGCGCCGTTGAGAAAATCTCCGAGGTCTGGGTGACGGTGGGTGATGCCAGGACGGAGCTTGAGCAGGAATTAGTCTTGTACAAGCAACCACGTGAGCACATATGACTTCCACAAACTGGTACCGAAACTAAGTACTCCGTACATGAATGTAAATGTGATACTAGTATGATCCGAATTTCGCAATACAGAGAAGTACAAAACGCACTGTCAAAATGTCCGTGGAGTGAAGTAATGCAATGT ]
[-] EMBL CA305653 [ TTCCAACAATAAAGCTGAGTGTTGTTGGTGGACGACCATTTTCCTGCGGGGGTAATAGGATATTTAGACCAAAGCTTCTGTCAAAA TGGTATGGTGTCAATGATATGGCTGAAAGTGCAAAGAGGATATATGATGCTGCTACAAATGCACCAAAGGAGCATGCTGTCATATTACTGGCACACAATGGGCCAACAGGTCTAGGCTCAAGAATGGAGGATATTTGTGGGCGGGATTGGGTTGCTGGTGGTGGTGATCATGGTGATCCAGATCTGGAGCAAGCCATATCTGATCTGCAAAGAGAAACCGGAGTTTCGATACCGCTGGTCGTGTTCGGTCACATGCACAAGAGCCTCGCCTACGGGAGAGGCCTTCGGAAGATGATTGCCTTTGGAGCTAACCGGACTATATATCTGAACGGCGCCGTTGTGCCTAGAGTGAATCATGCGCAATCAAGCAGGCAGCCTGCAATCTCCACAAGCGAAAAGACTGGGCTCGAAGGATTAACAGGACTGATGGTTCCGACATCGCGGGCGTTCACCATTGTTGATCTCTTTGAAGGCGCCGTTGAGAAAATCTCCGAGGTCTGGGTGACGGTGGGTGGTGCCAGGACGGAGCTTGAGCAG ]
[-] EMBL CB654849 [ GGTGGACGACCATTTTCCTGCGGGGGTAATAGGATATTTAGACCAAAGCTTCTGTCAAAATGGTTGGTATGGTGTCAATGATATGGCTGAAAGTGCAAAGAGGATATATGATGCTGCTACAAATGCACCAAAGGAGCATGCTGTCATATTACTGGCACACAATGGGCCAACAGGTCTAGGCTCAAGAATGGAGGATATTTGTGGGCGGGATTGGGTTGCTGGTGGTGGTGATCATGGTGATCCAGATCTGGAGCAAGCCATATCTGATCTGCAAAGAGAAACCGGAGTTTCGATACCGCTGGTCGTGTTCGGTCACATGCACAAGAGCCTCGCCTACGGGAGAGGCCTTCGGAAGATGATTGCCTTTGGAGCTAACCGGACTATATATCTGAACGGCGCCGTTGTGCCTAGAGTGAATCATGCGCAATCAAGCAGGCAGCCTGCAATCTCCACAAGCGAAAAGACTGGGCTCGAAGGATTAACAGGACTGATGGTTCCGACATCGCGGGCGTTCACCATTGTTGATCTCTTTGAAGGCGCCGTTGAGAAAATCTCCGAGGTCTGGGTGACGGTGGGTGATGCCAGGACGGAGCTTGAGCAGGAATTAGTCTTGTACAAGCAACCACGTGAGCACATATGACTTCCACAAACTGGTACCGAAACTAAGTACTCCGTACATGAATGTAAATGTGATACTAGTATGATCCGAATTTCGCAATACAGAGAAGTACAAAACGCACTGTCAAAATGTGGGTGGAGTGAAGTAATGCAATGTAAATTCGCTGAAAAAAAGGA]
consensusID : consensus_10423#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 456 fasta sequence
[AGGGAAAAAGAAAAGAAAAAAAAGAAGGGGGGAAGAAAGAAATGGTGAGGCCCGCACTGCTACGGTCTCGCTCCTCCCCTCCCACTCCGTCGTGGCCGGCAGCGGGAGCAGCCGCTGCCTCCTCCGCCGCCGCCGCCGCCGCCGCGCGCGCCTCCGCGAATCCTCTTCCTCCTCCTCTCTCCTCGCCGCCGCCCAGGCCCAGCCGCAGGAGCATGGCCAGCGCCGGCGTCGGACGCGGCCGGGTCCGCGTCGCGGTCGTCGGCGACGTGGTAACCCCCTCCTTGCCCTCTTCCTCCGTCTCTTCTTTGCGGCGTGCCTGGGATGGGGGATAGGCCAGACATGGGTGCTGGTGTGGCCTTGCGATTCTCGGTGGGTTTCGTGTGGCGTAGCATAGGGGATTCGGAGTGAGAGGGAGATGGCTTTGGGGACGGAAGCATTCTACCAATTCCCGCCCCC]
[+] EMBL AK109209 [AGGGAAAAAGAAAAGAAAAAAAAGAAGGGGGGAAGAAAGAAATGGTGAGGCCCGCACTGCTACGGTCTCGCTCCTCCCCTCCCACTCCGTCGTGGCCGGCAGCGGGAGCAGCCGCTGCCTCCTCCGCCGCCGCCGCCGCCGCCGCGCGCGCCTCCGCGAATCCTCTTCCTCCTCCTCTCTCCTCGCCGCCGCCCAGGCCCAGCCGCAGGAGCATGGCCAGCGCCGGCGTCGGACGCGGCCGGGTCCGCGTCGCGGTCGTCGGCGACGTGGTAACCCCCTCCTTGCCCTCTTCCTCCGTCTCTTCTTTGCGGCGTGCCTGGGATGGGGGATAGGCCAGACATGGGTGCTGGTGTGGCCTTGCGATTCTCGGTGGGTTTCGTGTGGCGTAGCATAGGGGATTCGGAGTGAGAGGGAGATGGCTTTGGGGACGGAAGCATTCTACCAATTCCCGCCCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10423#0 ------------------------------------------------------------
consensus_10423#1 AGGGAAAAAGAAAAGAAAAAAAAGAAGGGGGGAAGAAAGAAATGGTGAGGCCCGCACTGC 60
consensus_10423#0 --------CGCTCCTCCCCTCCCACTCCGTCGTGGCCGGCAGCGGGAGCAGCCGCTGCCT 52
consensus_10423#1 TACGGTCTCGCTCCTCCCCTCCCACTCCGTCGTGGCCGGCAGCGGGAGCAGCCGCTGCCT 120
****************************************************
consensus_10423#0 CCTCCGCCGCCGCCGCCGCCGCCGCGCGCGCCTCCGCGAATCCTCTTCCTCCTCCTCTCT 112
consensus_10423#1 CCTCCGCCGCCGCCGCCGCCGCCGCGCGCGCCTCCGCGAATCCTCTTCCTCCTCCTCTCT 180
************************************************************
consensus_10423#0 CCTCGCCGCCGCCCAGGCCCAGCCGCAGGAGCATGGCCAGCGCCGGCGTCGGACGCGGCC 172
consensus_10423#1 CCTCGCCGCCGCCCAGGCCCAGCCGCAGGAGCATGGCCAGCGCCGGCGTCGGACGCGGCC 240
************************************************************
consensus_10423#0 GGGTCCGCGTCGCGGTCGTCGGCGACGTGCATAATGATTGGACCCTTGAGGAAGACTCAA 232
consensus_10423#1 GGGTCCGCGTCGCGGTCGTCGGCGACGTG----GTAACCCCCTCCTTGCC-----CTCTT 291
***************************** * * ***** ***
consensus_10423#0 AAGCCCTACATTTTCTCCAGCCAGATTTGGTACTTTTTACAGGTGATTATGGCAACGAGA 292
consensus_10423#1 CCTCCGTCTCTTCTTTGCGGC--------GTGCCTGGGATGGGGGATAGGCCAGACATGG 343
** * ** * * * ** ** * * * ** *** ** *
consensus_10423#0 ATGTTCAACTTGTTAAAAGCATTTCAGATCTTCAGCTCCCCAAAGCAGCTATTCTTGGGA 352
consensus_10423#1 GTGCTGGTGTGGCCTTGCGATTCTCGG----TGGGTTTCGTGTGGCG--TAGCATAGGGG 397
** * * * * * ** * * * * * ** ** * ***
consensus_10423#0 ATCATGACTGTTGGCACACGTATCAGTTTTCAGAGAAGAAGGTAGATCGTGTCCAGCTTC 412
consensus_10423#1 ATTCGGAGTG-----AGAGGGAGATGGCTTTGGGGACGGAAGCATTCTA---CCAATTCC 449
** ** ** * * * * * ** * ** * * * * *** * *
consensus_10423#0 AGCTAGAGAGCCTTGGTGAGCAGCATGTTGGGTACAAATGTTTGGATTTTCCAACAATAA 472
consensus_10423#1 CGCCCCC----------------------------------------------------- 456
**
consensus_10423#0 AGCTGAGTGTTGTTGGTGGACGACCATTTTCCTGCGGGGGTAATAGGATATTTAGACCAA 532
consensus_10423#1 ------------------------------------------------------------
consensus_10423#0 AGCTTCTGTCAAAATGGTTGGTATGGTGTCAATGATATGGCTGAAAGTGCAAAGAGGATA 592
consensus_10423#1 ------------------------------------------------------------
consensus_10423#0 TATGATGCTGCTACAAATGCACCAAAGGAGCATGCTGTCATATTACTGGCACACAATGGG 652
consensus_10423#1 ------------------------------------------------------------
consensus_10423#0 CCAACAGGTCTAGGCTCAAGAATGGAGGATATTTGTGGGCGGGATTGGGTTGCTGGTGGT 712
consensus_10423#1 ------------------------------------------------------------
consensus_10423#0 GGTGATCATGGTGATCCAGATCTGGAGCAAGCCATATCTGATCTGCAAAGAGAAACCGGA 772
consensus_10423#1 ------------------------------------------------------------
consensus_10423#0 GTTTCGATACCGCTGGTCGTGTTCGGTCACATGCACAAGAGCCTCGCCTACGGGAGAGGC 832
consensus_10423#1 ------------------------------------------------------------
consensus_10423#0 CTTCGGAAGATGATTGCCTTTGGAGCTAACCGGACTATATATCTGAACGGCGCCGTTGTG 892
consensus_10423#1 ------------------------------------------------------------
consensus_10423#0 CCTAGAGTGAATCATGCGCAATCAAGCAGGCAGCCTGCAATCTCCACAAGCGAAAAGACT 952
consensus_10423#1 ------------------------------------------------------------
consensus_10423#0 GGGCTCGAAGGATTAACAGGACTGATGGTTCCGACATCGCGGGCGTTCACCATTGTTGAT 1012
consensus_10423#1 ------------------------------------------------------------
consensus_10423#0 CTCTTTGAAGGCGCCGTTGAGAAAATCTCCGAGGTCTGGGTGACGGTGGGTGATGCCAGG 1072
consensus_10423#1 ------------------------------------------------------------
consensus_10423#0 ACGGAGCTTGAGCAGGAATTAGTCTTGTACAAGCAACCACGTGAGCACATATGACTTCCA 1132
consensus_10423#1 ------------------------------------------------------------
consensus_10423#0 CAAACTGGTACCGAAACTAAGTACTCCGTACATGAATGTAAATGTGATACTAGTATGATC 1192
consensus_10423#1 ------------------------------------------------------------
consensus_10423#0 CGAATTTCGCAATACAGAGAAGTACAAAACGCACTGTCAAAATGTCCGTGGAGTGAAGTA 1252
consensus_10423#1 ------------------------------------------------------------
consensus_10423#0 ATGCAATGTAAATTCGCTGAAAAAAAGGA 1281
consensus_10423#1 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||