cluster # 1044

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1044 cluster # 1044 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1044#0 length = 615 sequences # 1

consensus_1044#1 length = 236 sequences # 1

consensusID : consensus_1044#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 615
fasta sequence

                              [TCATCTCCGCAAACATCACTCAGTGATCTATTATAATGGGAAAAGAAAAAATTCACATTAACATTGTCGTCATTGGTCACGTCGATTCAGGTAAATCAACCTCGACTGGTCATTTGATCTACAAATGTGGTGGTATCGACAAACGTACAATCGATAAATTCGAAAAAGAAGCTGCTGAAATGGGTAAAGGTTCATTCAAATATGCTTGGGTTTTGGACAAACTCAAAGCTGAACGTGAACGTGGTATTACCATCGATATTTCACTCTGGAAATTCGAAACTCAACGATATTACGTTACCATCATCGATGCTCCAGGTCACCGTGATTTCATCAAAAACATGATTACTGGTACATCACAAGCTGATTGCGCCGTCTTGGTCGTTGCTGCTGGTACTGGTGAATTCGAAGCTGGTATCTCCNAAAATGGTCAAACACGTGAACACGCTTTACTCGCCTATACACTTGGTGTCAAACAAATGATCATCGCTGTCAACAAAATGGACACAACTGAACCACCATATTCACAAAAACGTTTCGAAGAAATCAGCACTGAAGTCGCCTCATACATCANANAGATTGGTTACNATCCCAGCACAGNTGCTTTCGTTCCNATCT]

[+] EMBL CA754741             [TCATCTCCGCAAACATCACTCAGTGATCTATTATAATGGGAAAAGAAAAAATTCACATTAACATTGTCGTCATTGGTCACGTCGATTCAGGTAAATCAACCTCGACTGGTCATTTGATCTACAAATGTGGTGGTATCGACAAACGTACAATCGATAAATTCGAAAAAGAAGCTGCTGAAATGGGTAAAGGTTCATTCAAATATGCTTGGGTTTTGGACAAACTCAAAGCTGAACGTGAACGTGGTATTACCATCGATATTTCACTCTGGAAATTCGAAACTCAACGATATTACGTTACCATCATCGATGCTCCAGGTCACCGTGATTTCATCAAAAACATGATTACTGGTACATCACAAGCTGATTGCGCCGTCTTGGTCGTTGCTGCTGGTACTGGTGAATTCGAAGCTGGTATCTCCNAAAATGGTCAAACACGTGAACACGCTTTACTCGCCTATACACTTGGTGTCAAACAAATGATCATCGCTGTCAACAAAATGGACACAACTGAACCACCATATTCACAAAAACGTTTCGAAGAAATCAGCACTGAAGTCGCCTCATACATCANANAGATTGGTTACNATCCCAGCACAGNTGCTTTCGTTCCNATCT]




>consensus_1044#0
TCATCTCCGCAAACATCACTCAGTGATCTATTATAATGGGAAAAGAAAAAATTCACATTA
ACATTGTCGTCATTGGTCACGTCGATTCAGGTAAATCAACCTCGACTGGTCATTTGATCT
ACAAATGTGGTGGTATCGACAAACGTACAATCGATAAATTCGAAAAAGAAGCTGCTGAAA
TGGGTAAAGGTTCATTCAAATATGCTTGGGTTTTGGACAAACTCAAAGCTGAACGTGAAC
GTGGTATTACCATCGATATTTCACTCTGGAAATTCGAAACTCAACGATATTACGTTACCA
TCATCGATGCTCCAGGTCACCGTGATTTCATCAAAAACATGATTACTGGTACATCACAAG
CTGATTGCGCCGTCTTGGTCGTTGCTGCTGGTACTGGTGAATTCGAAGCTGGTATCTCCN
AAAATGGTCAAACACGTGAACACGCTTTACTCGCCTATACACTTGGTGTCAAACAAATGA
TCATCGCTGTCAACAAAATGGACACAACTGAACCACCATATTCACAAAAACGTTTCGAAG
AAATCAGCACTGAAGTCGCCTCATACATCANANAGATTGGTTACNATCCCAGCACAGNTG
CTTTCGTTCCNATCT

consensusID : consensus_1044#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence

                              [CTTCTATCCGTTTCAAAGCTACTTTTTTAATCCATTACAATGGGAAAAGAAAAAATTCATATTAACATTGTCGTCATTGGTCACGTCGATTCAGGTAAATCAACCTCGACTGGTCATTTGATCTACAAATGTGGTGGTATTGACAAACGTACCATCGATAAATTCGAAAAAGAAGCTGCTGAAATGGGCAAAGGTTCATTCAAATACGCTTGGGTTTTGGACAAACTTAAAGCTGA]

[+] EMBL CA755215             [CTTCTATCCGTTTCAAAGCTACTTTTTTAATCCATTACAATGGGAAAAGAAAAAATTCATATTAACATTGTCGTCATTGGTCACGTCGATTCAGGTAAATCAACCTCGACTGGTCATTTGATCTACAAATGTGGTGGTATTGACAAACGTACCATCGATAAATTCGAAAAAGAAGCTGCTGAAATGGGCAAAGGTTCATTCAAATACGCTTGGGTTTTGGACAAACTTAAAGCTGA]




>consensus_1044#1
CTTCTATCCGTTTCAAAGCTACTTTTTTAATCCATTACAATGGGAAAAGAAAAAATTCAT
ATTAACATTGTCGTCATTGGTCACGTCGATTCAGGTAAATCAACCTCGACTGGTCATTTG
ATCTACAAATGTGGTGGTATTGACAAACGTACCATCGATAAATTCGAAAAAGAAGCTGCT
GAAATGGGCAAAGGTTCATTCAAATACGCTTGGGTTTTGGACAAACTTAAAGCTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1044#0      -TCATCTCCG---CAAACATCACTCAGTGATCTATTATAATGGGAAAAGAAAAAATTCAC 56
consensus_1044#1      CTTCTATCCGTTTCAAAGCTACTTTTTTAATCCATTACAATGGGAAAAGAAAAAATTCAT 60
                       *  * ****   ****  *   *   * *** **** ********************* 

consensus_1044#0      ATTAACATTGTCGTCATTGGTCACGTCGATTCAGGTAAATCAACCTCGACTGGTCATTTG 116
consensus_1044#1      ATTAACATTGTCGTCATTGGTCACGTCGATTCAGGTAAATCAACCTCGACTGGTCATTTG 120
                      ************************************************************

consensus_1044#0      ATCTACAAATGTGGTGGTATCGACAAACGTACAATCGATAAATTCGAAAAAGAAGCTGCT 176
consensus_1044#1      ATCTACAAATGTGGTGGTATTGACAAACGTACCATCGATAAATTCGAAAAAGAAGCTGCT 180
                      ******************** *********** ***************************

consensus_1044#0      GAAATGGGTAAAGGTTCATTCAAATATGCTTGGGTTTTGGACAAACTCAAAGCTGAACGT 236
consensus_1044#1      GAAATGGGCAAAGGTTCATTCAAATACGCTTGGGTTTTGGACAAACTTAAAGCTGA---- 236
                      ******** ***************** ******************** ********    

consensus_1044#0      GAACGTGGTATTACCATCGATATTTCACTCTGGAAATTCGAAACTCAACGATATTACGTT 296
consensus_1044#1      ------------------------------------------------------------
                                                                                  

consensus_1044#0      ACCATCATCGATGCTCCAGGTCACCGTGATTTCATCAAAAACATGATTACTGGTACATCA 356
consensus_1044#1      ------------------------------------------------------------
                                                                                  

consensus_1044#0      CAAGCTGATTGCGCCGTCTTGGTCGTTGCTGCTGGTACTGGTGAATTCGAAGCTGGTATC 416
consensus_1044#1      ------------------------------------------------------------
                                                                                  

consensus_1044#0      TCCNAAAATGGTCAAACACGTGAACACGCTTTACTCGCCTATACACTTGGTGTCAAACAA 476
consensus_1044#1      ------------------------------------------------------------
                                                                                  

consensus_1044#0      ATGATCATCGCTGTCAACAAAATGGACACAACTGAACCACCATATTCACAAAAACGTTTC 536
consensus_1044#1      ------------------------------------------------------------
                                                                                  

consensus_1044#0      GAAGAAATCAGCACTGAAGTCGCCTCATACATCANANAGATTGGTTACNATCCCAGCACA 596
consensus_1044#1      ------------------------------------------------------------
                                                                                  

consensus_1044#0      GNTGCTTTCGTTCCNATCT 615
consensus_1044#1      -------------------