These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1044#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence [TCATCTCCGCAAACATCACTCAGTGATCTATTATAATGGGAAAAGAAAAAATTCACATTAACATTGTCGTCATTGGTCACGTCGATTCAGGTAAATCAACCTCGACTGGTCATTTGATCTACAAATGTGGTGGTATCGACAAACGTACAATCGATAAATTCGAAAAAGAAGCTGCTGAAATGGGTAAAGGTTCATTCAAATATGCTTGGGTTTTGGACAAACTCAAAGCTGAACGTGAACGTGGTATTACCATCGATATTTCACTCTGGAAATTCGAAACTCAACGATATTACGTTACCATCATCGATGCTCCAGGTCACCGTGATTTCATCAAAAACATGATTACTGGTACATCACAAGCTGATTGCGCCGTCTTGGTCGTTGCTGCTGGTACTGGTGAATTCGAAGCTGGTATCTCCNAAAATGGTCAAACACGTGAACACGCTTTACTCGCCTATACACTTGGTGTCAAACAAATGATCATCGCTGTCAACAAAATGGACACAACTGAACCACCATATTCACAAAAACGTTTCGAAGAAATCAGCACTGAAGTCGCCTCATACATCANANAGATTGGTTACNATCCCAGCACAGNTGCTTTCGTTCCNATCT] [+] EMBL CA754741 [TCATCTCCGCAAACATCACTCAGTGATCTATTATAATGGGAAAAGAAAAAATTCACATTAACATTGTCGTCATTGGTCACGTCGATTCAGGTAAATCAACCTCGACTGGTCATTTGATCTACAAATGTGGTGGTATCGACAAACGTACAATCGATAAATTCGAAAAAGAAGCTGCTGAAATGGGTAAAGGTTCATTCAAATATGCTTGGGTTTTGGACAAACTCAAAGCTGAACGTGAACGTGGTATTACCATCGATATTTCACTCTGGAAATTCGAAACTCAACGATATTACGTTACCATCATCGATGCTCCAGGTCACCGTGATTTCATCAAAAACATGATTACTGGTACATCACAAGCTGATTGCGCCGTCTTGGTCGTTGCTGCTGGTACTGGTGAATTCGAAGCTGGTATCTCCNAAAATGGTCAAACACGTGAACACGCTTTACTCGCCTATACACTTGGTGTCAAACAAATGATCATCGCTGTCAACAAAATGGACACAACTGAACCACCATATTCACAAAAACGTTTCGAAGAAATCAGCACTGAAGTCGCCTCATACATCANANAGATTGGTTACNATCCCAGCACAGNTGCTTTCGTTCCNATCT] consensusID : consensus_1044#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [CTTCTATCCGTTTCAAAGCTACTTTTTTAATCCATTACAATGGGAAAAGAAAAAATTCATATTAACATTGTCGTCATTGGTCACGTCGATTCAGGTAAATCAACCTCGACTGGTCATTTGATCTACAAATGTGGTGGTATTGACAAACGTACCATCGATAAATTCGAAAAAGAAGCTGCTGAAATGGGCAAAGGTTCATTCAAATACGCTTGGGTTTTGGACAAACTTAAAGCTGA] [+] EMBL CA755215 [CTTCTATCCGTTTCAAAGCTACTTTTTTAATCCATTACAATGGGAAAAGAAAAAATTCATATTAACATTGTCGTCATTGGTCACGTCGATTCAGGTAAATCAACCTCGACTGGTCATTTGATCTACAAATGTGGTGGTATTGACAAACGTACCATCGATAAATTCGAAAAAGAAGCTGCTGAAATGGGCAAAGGTTCATTCAAATACGCTTGGGTTTTGGACAAACTTAAAGCTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1044#0 -TCATCTCCG---CAAACATCACTCAGTGATCTATTATAATGGGAAAAGAAAAAATTCAC 56 consensus_1044#1 CTTCTATCCGTTTCAAAGCTACTTTTTTAATCCATTACAATGGGAAAAGAAAAAATTCAT 60 * * **** **** * * * *** **** ********************* consensus_1044#0 ATTAACATTGTCGTCATTGGTCACGTCGATTCAGGTAAATCAACCTCGACTGGTCATTTG 116 consensus_1044#1 ATTAACATTGTCGTCATTGGTCACGTCGATTCAGGTAAATCAACCTCGACTGGTCATTTG 120 ************************************************************ consensus_1044#0 ATCTACAAATGTGGTGGTATCGACAAACGTACAATCGATAAATTCGAAAAAGAAGCTGCT 176 consensus_1044#1 ATCTACAAATGTGGTGGTATTGACAAACGTACCATCGATAAATTCGAAAAAGAAGCTGCT 180 ******************** *********** *************************** consensus_1044#0 GAAATGGGTAAAGGTTCATTCAAATATGCTTGGGTTTTGGACAAACTCAAAGCTGAACGT 236 consensus_1044#1 GAAATGGGCAAAGGTTCATTCAAATACGCTTGGGTTTTGGACAAACTTAAAGCTGA---- 236 ******** ***************** ******************** ******** consensus_1044#0 GAACGTGGTATTACCATCGATATTTCACTCTGGAAATTCGAAACTCAACGATATTACGTT 296 consensus_1044#1 ------------------------------------------------------------ consensus_1044#0 ACCATCATCGATGCTCCAGGTCACCGTGATTTCATCAAAAACATGATTACTGGTACATCA 356 consensus_1044#1 ------------------------------------------------------------ consensus_1044#0 CAAGCTGATTGCGCCGTCTTGGTCGTTGCTGCTGGTACTGGTGAATTCGAAGCTGGTATC 416 consensus_1044#1 ------------------------------------------------------------ consensus_1044#0 TCCNAAAATGGTCAAACACGTGAACACGCTTTACTCGCCTATACACTTGGTGTCAAACAA 476 consensus_1044#1 ------------------------------------------------------------ consensus_1044#0 ATGATCATCGCTGTCAACAAAATGGACACAACTGAACCACCATATTCACAAAAACGTTTC 536 consensus_1044#1 ------------------------------------------------------------ consensus_1044#0 GAAGAAATCAGCACTGAAGTCGCCTCATACATCANANAGATTGGTTACNATCCCAGCACA 596 consensus_1044#1 ------------------------------------------------------------ consensus_1044#0 GNTGCTTTCGTTCCNATCT 615 consensus_1044#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||