|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1204 fasta sequence
[CTACCCGCCCTGCTCCCGTGCTGCCACCAACAACGCGATCACCAGTTCACCACCACCGCCACGCGCGCGCTGTCTCCAAACACAGACGCATAAACCCTAGCAAGCCAACACGGAGGAAGAGCGATCGATCGAGCAGCGGAGAAAGCTTCGCCTCGCCACCATGCGGCGATCGGAGTGGGAGGACCGGTGGTGCAAGCGGCACCCGGAGCACCGGCTGTCCAAGGGCGTGTGCCCCTACTGCCTCCGCGACCGCCTCGCCCACCTCTCCGCCTCCTCCTCGGCCACCACCACGACGCGCGCCTCCTCCTCCGCCGAATCCAGCGGCTACTCCTCCGGCTCGCCTCCCTGCTACGGGGCCCTCTCGGCCGACGTCAGCTCCGTACACGTGGTCGGCGCCGCCGGCTCGTCCTTCGCCAACGTCGCCGCCTTCTCGCAGCCGCTGATGCCGAGCTCGGTTAGTCGGAAACCAGCCGGAGGGGGGCAAGAAGAGCCGGGAAGGGAGGCATCTGGTAAGGGGAAGCA-GCAGGAGGTGAAGAGGAAGAAGAGCGGGAAGAAGAAGAAGATTGGGAGGTTCCTGTCGAGGCTCGTCGGAGCGGAGAAGCGGCGGCAATCAGGGGACGCCGATGGCGGCGATCTCTTCCATTCCAAGACCATGAAGGAGAAG-ACGGCGCACAAGTGGGTATTTTTCTGATCAAACGTTGCCGCCACCGCATGCAAACTATGGATCGTAAATTCCATGCTTGGTTGTTATTCTTGCCTACCTTTTTTTTTAAAATTTTTAGGGGGCTTTCACTCTAAACTATTCTCAAGTATTTTTGTGTTTGATTTTGACTTTTTTTTTAAAAAAAAACAAGAAGAATTTTGGGATCCTGTATGTATACGAGCAGAAGTTTATAATTATTAACCTGTCAATGATTTGTACTTGACCACAA-CGGGGGATTGCAAATCGTTACTCTGTAAAGCTAGAAAAATATAAGGAGACAGTGTATACGGGTGTAAAATTAGGCATCTGTACAGTATCTTGTATAGTTTCAATTATAAGTTTCATTTCTCGAATTCATGCATGATCTTATAGTTTTGACTATTTAATTTGCTGATTTGTATGTAGAAATCACAATTTTCCAGTTGTACTGCTCGTTAATTTAAGTTACCAGTTAATTGCCCCTAAAGATACTTACACTTTTGATTTTGGATTTGTAAAAAA]
[+] EMBL AK066877 [CTACCCGCCCTGCTCCCGTGCTGCCACCAACAACGCGATCACCAGTTCACCACCACCGCCACGCGCGCGCTGTCTCCAAACACAGACGCATAAACCCTAGCAAGCCAACACGGAGGAAGAGCGATCGATCGAGCAGCGGAGAAAGCTTCGCCTCGCCACCATGCGGCGATCGGAGTGGGAGGACCGGTGGTGCAAGCGGCACCCGGAGCACCGGCTGTCCAAGGGCGTGTGCCCCTACTGCCTCCGCGACCGCCTCGCCCACCTCTCCGCCTCCTCCTCGGCCACCACCACGACGCGCGCCTCCTCCTCCGCCGAATCCAGCGGCTACTCCTCCGGCTCGCCTCCCTGCTACGGGGCCCTCTCGGCCGACGTCAGCTCCGTACACGTGGTCGGCGCCGCCGGCTCGTCCTTCGCCAACGTCGCCGCCTTCTCGCAGCCGCTGATGCCGAGCTCGGTTAGTCGGAAACCAGCCGGAGGGGGGCAAGAAGAGCCGGGAAGGGAGGCATCTGGTAAGGGGAAGCA GCAGGAGGTGAAGAGGAAGAAGAGCGGGAAGAAGAAGAAGATTGGGAGGTTCCTGTCGAGGCTCGTCGGAGCGGAGAAGCGGCGGCAATCAGGGGACGCCGATGGCGGCGATCTCTTCCATTCCAAGACCATGAAGGAGAAG ACGGCGCACAAGTGGGTATTTTTCTGATCAAACGTTGCCGCCACCGCATGCAAACTATGGATCGTAAATTCCATGCTTGGTTGTTATTCTTGCCTACCTTTTTTTTTAAAATTTTTAGGGGGCTTTCACTCTAAACTATTCTCAAGTATTTTTGTGTTTGATTTTGACTTTTTTTTTAAAAAAAAACAAGAAGAATTTTGGGATCCTGTATGTATACGAGCAGAAGTTTATAATTATTAACCTGTCAATGATTTGTACTTGACCACAA CGGGGGATTGCAAATCGTTACTCTGTAAAGCTAGAAAAATATAAGGAGACAGTGTATACGGGTGTAAAATTAGGCATCTGTACAGTATCTTGTATAGTTTCAATTATAAGTT ]
[+] EMBL BI807687 [ GGGGCAAGAAGA CC GGAAGGGA GCATCT GTAAGGGGAA CACGCAGGA GTGAAGAGGAAGAAGAGCGGGAAGAAGAAGAAGATTGGGAGGTTCCTGTCGAGGCTCGTCGGAGCGGAGTAAC GCGGCAATCAGGGGAC CCGAT GCGGCGATCTCTTCCATTCCAAGACCATGAAGGAGAAGTACGGCGCACAAGTGGGTATTTTTCTGATCAAACG TGCCGCCACCGCATGCAAACTATGGATCGTAAATTCCATGCTTGGTTGTTATTCTT CCTACCTTTTTTTTTAAAATTTTTAGGGGGCTTTCACTCTAAACTATTCTCAAGTATTTTTGTGTTTGATTTTGAC TTTTTTTAAAAAAAAAAC AGAAGAATTTTGGGATCCTGTATGTATACGAGCAGAAGTTTATAATTATTAACCTGTCAATGATTTGTACTTGACCACAACCGGGGGATTGCAAATCGTTACTCTGTAAAGCTAGAAAAATATAAGGAGACAGTGTATACGGGTGTAAAATTAGGCATCTGTACAGTATCTTGTATAGTTTCAATTATAAGTTTCATTTCTCGAAaaaaaaaa ]
[-] EMBL CB627645 [ AGAAGAAGATTGGGAGGTTCCTGTCGAGGCTCGTCGGAGCGGAGAAGCGGCGGCAATCAGGGGACGCCGATGGCGGCGATCTCTTCCATTCCAAGACCATGAAGGAGAAG ACGGCGCACAAGTGGGTATTTTTCTGATCAAACGTTGCCGCCACCGCATGCAAACTATGGATCGTAAATTCCATGCTTGGTTGTTATTCTTGCCTACCTTTTTTTTTAAAATTTTTAGGGGGCTTTCACTCTAAACTATTCTCAAGTATTTTTGTGTTTGATTTTGACTTTTTTTTT AAAAAAAACAAGAAGAATTTTGGGATCCTGTATGTATACGAGCAGAAGTTTATAATTATTAACCTGTCAATGATTTGTACTTGACCACAA CGGGGGATTGCAAATCGTTACTCTGTAAAGCTAGAAAAATATAAGGAGACAGTGTATACGGGTGTAAAATTAGGCATCTGTACAGTATCTTGTATAGTTTCAATTATAAGTTTCATTTCTCGAATTCATGCATGATCTTATAGTTTTGACTATTTAATTTGCTGATTTGTATGTAGAAATCACAATTTTCCAGTTGTACTGCTCGTTAATTTAAGTTACCAGTTAATTGCCCCTAAAGATACTTACACTTTTGATTTTGGATTTGTAAAAAA]
[+] EMBL CB627644 [ ATTGGGAGGTTCCTGTCGAGGCTCGTCGGAGCGGAGAAGCGGCGGCAATCAGGGGACGCCGATGGCGGCGATCTCTTCCATTCCAAGACCATGAAGGAGAAG ACGGCGCACAAGTGGGTATTTTTCTGATCAAACGTTGCCGCCACCGCATGCAAACTATGGATCGTAAATTCCATGCTTGGTTGTTATTCTTGCCTACCTTTTTTTTTAAAATTTTTAGGGGGCTTTCACTCTAAACTATTCTCAAGTATTTTTGTGTTTGATTTTGACTTTTTTTTT AAAAAAAACAAGAAGAATTTTGGGATCCTGTATGTATACGAGCAGAAGTTTATAATTATTAACCTGTCAATGATTTGTACTTGACCACAA CGGGGGATTGCAAATCGTTACTCTGTAAAGCTAGAAAAATATAAGGAGACAGTGTATACGGGTGTAAAATTAGGCATCTGTACAGTATCTTGTATAGTTTCAATTATAAGTTTCATTTCTCGAATTCATGCATGATCTTATAGTTTTGACTATTTAATTTGCTTATTTGTATGTAGAAATCACAATTTTCCAGTTGTACTGCTCGTTAATTTAAGTTACCAGTTAATTGCCACTACAAATACTTACACTTTTGATTTTGGAT ]
consensusID : consensus_10444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 515 fasta sequence
[AGAAGAAGAAGATTGGGAGGTTCCTGTCGAGGCTCGTCGGNGCGGAGAAGCGGCGGCAATCAGGGGAC-CCGATGGCGGCGATCTCTTCCATTCCAAGACCATGAAGGAGAAGACGGCGCACAAGTGGGTATTTTTCTGA-TCAAACGTTGCCGCCACCGCATGCAAACTATGGATCGTAAATTCCATGCTTGGTTGTTATTCTTGCCTACC--TTTT-TTTTAAAATTTTTAGGGGGCTTTCACTCTAAACTATTCTCAAGTATTTTTGTGTTTGATTTTGACTTTTTTTTTAAAAAAAAACAAGAAGAATTTTGGGATCCTGTATGTATACGAGCAGAAGTTTATAATTATTAACCTGTCAATGATTTGTACTTGACCACAACGGGGGATTGCAAATCGTTACTCTGTAAAGCTAGAAAAATATAAGGAGACAGTGTATACGGGTGTAAAATTAGGCATCTGTACAGTATCTTGTATAGTTTCAATTATAAGTTTCATTTCTCGAAAAAAAAAAAAAA]
[+] EMBL AU093939 [AGAAGAAGAAGATTGGGAGGTTCCTGTCGAGGCTCGTCGGNGCGGAGAAGCGGCGGCAATCAGGGGAC CCGATGGCGGCGATCTCTTCCATTCCAAGACCATGAAGGAGAAGACGGCGCACAAGTGGGTATTTTTCTGA TCAAACGTTGCCGCCACCGCATGCAAACTATGGATCGTAAATTCCATGCTTGGTTGTTATTCTTGCCTACC TTTT TTTTAAAATTTTTAGGGGGCTTTCACTCTAAACTATTCTCAAGTATTTTTGTGTTTGATTTTGACTTTTTTTTTAAAAAAAAACAAGAAGAATTTTGGGATCCTGTATGTATACGAGCAGAAGTTTATAATTATTAACCTGTCAATGATTTGTACTTGACCACAACGGGGGATTGCAAATCGTTACTCTGTAAAGCTAGAAAAATATAAGGAGACAGTGTATACGGGTGTAAAATTAGGCATCTGTACAGTATCTTGTATAGTTTCAATTATAAGTTTCATTTCTCGAAAAAAAAAAAAAA]
[+] EMBL BI804918 [ AAGAAGAAGATTGGGA GTTCCTGTCGAGGCTC TCGGACCGGAGAAGCGGC GC ATCAGGGGACGCCGAT GCGGCGATCTCTTCCATTCC AGACCATGAAGGAGAAGACGGCGCACAAGTGGGTATTTTTCTGAGTC AACGTTGCCGCC CCGCATGCCAACTATGGATCGTAAATTCCATGCTTGGTTGTTATTCTTGCCTACCTGTTTTGTTTTAAAATTTTTAGGGGGCTTTCACTCTAAACTATTCTCAAGTATTTTTGTGTTTGATTTTGACTTTTTTTAAAAAAAAAAACCAGAAGAATTTTGGGATCCTGTATGTATACGA CAGAAGTTTATAATTATTAACCTGTC ATGATTTGTACTTGACCACACCGGGGGATTGC AATCGTTACTCTGTAAAGCTAGAAAAATATAAGGAGACAGTGTATACGGGTGTAAAATTAGGCATCTGTACAGTATCTTGTATAGTTTCAATTATAAGTTTCATTTCTCGAATTAAAAAAAAAA]
consensusID : consensus_10444#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 350 fasta sequence
[CTTTGCTCTCCTCGCTCCTCTTATCATCTCCTCCTACCCGCCCTGCTCCCGTGCTGCCACCAACAACGCGATCACCAGTTCACCACCACCGCCACGCGCGCGCTGTCTCCAAACACAGACGNATAAACCCTAGCAAGCCAACACGGAGGAAGAGCGATCGATCGAGCAGCGGAGAAAGCTTCGCCTCGCCACCATGCGGCGATCGGAGTGGGAGGACCNGGTGGTGCAAGCGGGCAACCNGGAGCACCTGCTTGTCCAAGGGCGTGTGCCCNTACTGCCTCCGGGACCGCTTGGCCCAACTGTTCGGCTTCTCCTNGGGCAACAACANGACGGGGGCTTCCTTCTCNGCC]
[+] EMBL C72290 [CTTTGCTCTCCTCGCTCCTCTTATCATCTCCTCCTACCCGCCCTGCTCCCGTGCTGCCACCAACAACGCGATCACCAGTTCACCACCACCGCCACGCGCGCGCTGTCTCCAAACACAGACGNATAAACCCTAGCAAGCCAACACGGAGGAAGAGCGATCGATCGAGCAGCGGAGAAAGCTTCGCCTCGCCACCATGCGGCGATCGGAGTGGGAGGACCNGGTGGTGCAAGCGGGCAACCNGGAGCACCTGCTTGTCCAAGGGCGTGTGCCCNTACTGCCTCCGGGACCGCTTGGCCCAACTGTTCGGCTTCTCCTNGGGCAACAACANGACGGGGGCTTCCTTCTCNGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10444#0 CTACCCGCCCTGCTCCCGTGCTGCCACCAACAACGCGATCACCAGTTCACCACCACCGCC 60
consensus_10444#1 ------------------------------------------------------------
consensus_10444#2 ------------------------------------------------------------
consensus_10444#0 ACGCGCGCGCTGTCTCCAAACACAGACGCATAAACCCTAGCAAGCCAACACGGAGGAAGA 120
consensus_10444#1 ------------------------------------------------------------
consensus_10444#2 ------------------------------------------------------------
consensus_10444#0 GCGATCGATCGAGCAGCGGAGAAAGCTTCGCCTCGCCACCATGCGGCGATCGGAGTGGGA 180
consensus_10444#1 ------------------------------------------------------------
consensus_10444#2 ------------------------------------------------------------
consensus_10444#0 GGACCGGTGGTGCAAGCGGCACCCGGAGCACCGGCTGTCCAAGGGCGTGTGCCCCTACTG 240
consensus_10444#1 ------------------------------------------------------------
consensus_10444#2 ------------------------------------------------------------
consensus_10444#0 CCTCCGCGACCGCCTCGCCCACCTCTCCGCCTCCTCCTCGGCCACCACCACGACGCGCGC 300
consensus_10444#1 ------------------------------------------------------------
consensus_10444#2 ------------------------------------------------------------
consensus_10444#0 CTCCTCCTCCGCCGAATCCAGCGGCTACTCCTCCGGCTCGCCTCCCTGCTACGGGGCCCT 360
consensus_10444#1 ------------------------------------------------------------
consensus_10444#2 ------------------------------------------------------------
consensus_10444#0 CTCGGCCGACGTCAGCTCCGTACACGTGGTCGGCGCCGCCGGCTCGTCCTTCGCCAACGT 420
consensus_10444#1 ------------------------------------------------------------
consensus_10444#2 ------------------------------------------------------------
consensus_10444#0 CGCCGCCTTCTCGCAGCCGCTGATGCCGAGCTCGGTTAGTCGGAAACCAGCCGGAGGGGG 480
consensus_10444#1 ------------------------------------------------------------
consensus_10444#2 ------------------------------------------------------------
consensus_10444#0 GCAAGAAGAGCCGGGAAGGGAGGCATCTGGTAAGGGGAAGCAGCAGGAGGTGAAGAGGAA 540
consensus_10444#1 ------------------------------------------------------------
consensus_10444#2 ------------------------------------------------------------
consensus_10444#0 GAAGAGCGGGAAGAAGAAGAAGATTGGGAGGTTCCTGTCGAGGCTCGTCGGAGCGGAGAA 600
consensus_10444#1 -----------AGAAGAAGAAGATTGGGAGGTTCCTGTCGAGGCTCGTCGGNGCGGAGAA 49
consensus_10444#2 ------------------------------------------------------------
consensus_10444#0 GCGGCGGCAATCAGGGGACGCCGATGGCGGCGATCTCTTCCATTCCAAGACCATGAAGGA 660
consensus_10444#1 GCGGCGGCAATCAGGGGAC-CCGATGGCGGCGATCTCTTCCATTCCAAGACCATGAAGGA 108
consensus_10444#2 ------------------------------------------------------------
consensus_10444#0 GAAGACGGCGCACAAGTGGGTATTTTTCTGATCAAACGTTGCCGCCACCGCATGCAAACT 720
consensus_10444#1 GAAGACGGCGCACAAGTGGGTATTTTTCTGATCAAACGTTGCCGCCACCGCATGCAAACT 168
consensus_10444#2 ------------------------------------------------------------
consensus_10444#0 ATGGATCGTAAATTCCATGCT-TGGTTGTTATTCTTGCCTACCTTTTTTTTTAAAATTTT 779
consensus_10444#1 ATGGATCGTAAATTCCATGCT-TGGTTGTTATTCTTGCCTACCTTTTTTTT-AAAATTTT 226
consensus_10444#2 --------------CTTTGCTCTCCTCGCTCCTCTTATCATCTCCTCCTACCCGCCCTGC 46
* **** * * * * **** * * * * *
consensus_10444#0 TAGGGGGCTTTCACT--CTAAACTATTCTCAAGTATTTTTGTGTTTGATTTTGACTTTTT 837
consensus_10444#1 TAGGGGGCTTTCACT--CTAAACTATTCTCAAGTATTTTTGTGTTTGATTTTGACTTTTT 284
consensus_10444#2 TCCCGTGCTGCCACCAACAACGCGATCACCAGTTCACCACCACCGCCACGCGCGCGCTGT 106
* * *** *** * * * ** ** * * * * *
consensus_10444#0 TTTTAAAAAAAAACAAGAAGAATTTTGGGATCCTGTATGTATACGAGCAGAAGTTTATAA 897
consensus_10444#1 TTTTAAAAAAAAACAAGAAGAATTTTGGGATCCTGTATGTATACGAGCAGAAGTTTATAA 344
consensus_10444#2 CTCCAAACACAGACGNATAAACCCTAGCAAGCCAACACG-----GAGGAAGAGCGATCGA 161
* *** * * ** * * * * * ** * * *** * ** *
consensus_10444#0 TTATTAACCTGTCAATGATTTGTACTTGACCACAACGGGGGATTGCAAATCGTT--ACTC 955
consensus_10444#1 TTATTAACCTGTCAATGATTTGTACTTGACCACAACGGGGGATTGCAAATCGTT--ACTC 402
consensus_10444#2 TCGAGCAGCGGAGAAAGCTTCG--CCTCGCCACCATGCGGCGATCGGAGTGGGAGGACCN 219
* * * * ** * ** * * * **** * * ** * * * * **
consensus_10444#0 TGTAAAGCTAGAAAAATATAAGGAGACAGTGTATACGGGTGTAAAATTAGGCATCTGTAC 1015
consensus_10444#1 TGTAAAGCTAGAAAAATATAAGGAGACAGTGTATACGGGTGTAAAATTAGGCATCTGTAC 462
consensus_10444#2 GGTGGTGCAAGCGGGCAACCNGG----AGCACCTGCTTGTCCAAGGGCGTGTGCCCNTAC 275
** ** ** * ** ** * * ** ** * * ***
consensus_10444#0 AGTATCTTGTATAGTTTCAATTATAAGTTTCATTTCTCGAATTCATGCATGATCTTATAG 1075
consensus_10444#1 AGTATCTTGTATAGTTTCAATTATAAGTTTCATTTCTCGAAAAAAAAAAAAAA------- 515
consensus_10444#2 TGCCTCCGGGACCGCTTGGCCCAACTGTTCGGCTTCTCCTNGGGCAACAACANGACGGGG 335
* ** * * * ** * *** ***** * *
consensus_10444#0 TTTTGACTATTTAATTTGCTGATTTGTATGTAGAAATCACAATTTTCCAGTTGTACTGCT 1135
consensus_10444#1 ------------------------------------------------------------
consensus_10444#2 GCTTCCTTCTCNGCC--------------------------------------------- 350
consensus_10444#0 CGTTAATTTAAGTTACCAGTTAATTGCCCCTAAAGATACTTACACTTTTGATTTTGGATT 1195
consensus_10444#1 ------------------------------------------------------------
consensus_10444#2 ------------------------------------------------------------
consensus_10444#0 TGTAAAAAA 1204
consensus_10444#1 ---------
consensus_10444#2 ---------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||