cluster # 10445

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Oryza sativa
cluster # 10445 cluster # 10445 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10445#0 length = 771 sequences # 5

consensus_10445#1 length = 190 sequences # 2

consensusID : consensus_10445#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 771
fasta sequence

                              [GCTCTTCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCGCATCATCGCCGTCGAAGCGTAGAGGGAGTAAGGGGAGGATGGGGAGAGGAAGAGGGGTGAGCAGCGGGGGAGGGCAGAGCTCGCTGGGCTACCTCTTCGGCGGCGGCGAGACGGCTCCCGCGGCGAAGGCGAA-CCGNC-TGCAGCGGCGGAGAAGGAGACTACGCCGGCGCCAGTGAAGAAGGCGGCGGTGGCGGCGGCGGCGTCGCCGTCGGCAGCGGAGAAGATGAAGGAGATCCCCGCGGGGATACAAAGCACCCAGGCCAACAACTACTTCCGGGCGCAGGGCCAGAATTGCGGCAACTTCCTCACGGATCGGCCG--TCAACCAA-GGTGCACGCTGCTCCGGGCGGCGGCTCGTCGCTCGGCTACCTCTTCGGCGGCAAGTGATGCGAAAAAAAAAGAAGAAAGAATCCTCTGCTCGAGAAATTTCTCTCTAGCAGATAACGTGATTATTTTTAAACCTGCTTTTGTGTAGATTGCCTGTGTATTGTGTGTTGTGATGTGTTCTTGTGTGATTTGCAGCTACTTAAAAAAAAAACTTAACTAGTTCTGCAGGCTCTGATGGCTGTATCAGCCACTGGCATAAAATGCTCAGATGGTGTTAATTCTTCGAGTTAGTATGCTTGGAATGCAGTTGTAACTTGTAAACATTTACATGACCATGTCTCTGTTTCCTTCAAGTTGTCTACTCCACTTTATATTAGTCATGCTGAAGTAGTAGGTGGCAAAAAA]

[+] EMBL AK099444             [GCTCTTCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCGCATCATCGCCGTCGAAGCGTAGAGGGAGTAAGGGGAGGATGGGGAGAGGAAGAGGGGTGAGCAGCGGGGGAGGGCAGAGCTCGCTGGGCTACCTCTTCGGCGGCGGCGAGACGGCTCCCGCGGCGAAGGCGAAGCCGGC TGCAGCGGCGGAGAAGGAGACTACGCCGGCGCCAGTGAAGAAGGCGGCGGTGGCGGCGGCGGCGTCGCCGTCGGCAGCGGAGAAGATGAAGGAGATCCCCGCGGGGATACAAAGCACCCAGGCCAACAACTACTTCCGGGCGCAGGGCCAGAATTGCGGCAACTTCCTCACGGATCGGCCG  TCAACCAA GGTGCACGCTGCTCCGGGCGGCGGCTCGTCGCTCGGCTACCTCTTCGGCGGCAAGTGATGCGAAAAAAAAAGAAGAAAGAATCCTCTGCTCGAGAAATTTCTCTCTAGCAGATAACGTGATTATTTTTAAACCTGCTTTTGTGTAGATTGCCTGTGTATTGTGTGTTGTGATGTGTTCTTGTGTGATTTGCAGCTACTTAAAAAAAAAACTTAACTAGTTCTGCAGGCTCTGATGGCTGTATCAGCCACTGGCATAAAATGCTCAGATGGTGTTAATTCTTCGAGTTAGTATGCTTGGAATGCAGTTGTAACTTGTAAACATTTACATGACCATGTCTC                                                                ]
[+] EMBL AU077768             [            CTCCTCCTCCTCCGCCGCCGCCGCCGCCGCATCATCGCCGTCGAAGCGTAGAGGGAGTAAGGGGAGGATGGGGAGAGGAAGAGGGGTGAGCAGCGGGGGAGGGCAGAGCTCGCTGGTCTACCTCTTCGGCGGCGGCGAGACGGCTCCCGCGGCGAAGGCGAA CGANC TGCAGCGGCGGAGAAGGAGACTACGCCGGCGCCAGTGAAGAAGGCGGCGGTGGCGGCGGCGGCGTCG CGTCGGCAGCGGAGAAGATGAAGGAGATCCCCGCGGGGATACAAAGCACCCAGGCCAACAACTACTTCCGGGCGCAGGGCCAGAATTGCGGCAACTTCCTCACGGATCGGCCG  TCAACCAA GGTGCACGCTGCTCCGGGCGGCGGCTCGTCGCTCGGCTACCTCTTCGGCGGCAAGTGATGCGAAAAAA                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU065932             [                                CCGCCGCCGCATCATCGCCGTCGAAGCGTAGAGGGAGTAAGGGGAGGATGGGGAGAGGAAGAGGGGTGAGCAGCGGGGGAGGGCAGAGCTCGCTGGGCTACCTCTTCGGCGGCGGCGAGACGGCTCCCGCGGCGAAGGCGAA  CGNCTTGCAGCGGCGGAGAAGGAGACTACGCCGGCGCCAGTAAAGAAGGCGGCGGTGGCGGCGGCGANGTCG CGTCGGCAGCGGAGAAGATGAAGGAGATCCCCGCGGGGATACAAAGCACCCAGGCCAACAACTACTTCCGGGCGCAGGGCCAGAATTGCGGCAACTTCCTCACGGATCGGCCG  TC ANCAA  GTTNACG TTCTCCTNGCGGCGGCTNGTCGGTCGGCTACCTCTTCGGC                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU064379             [                                        GCATCATCGCCGTCGAAGCGTAGAGGGAGTAAGGGGAGGATGGGGAGAGGAAGAGGGGTGAGCAGCGGGGGAGGGCAGAGCTCGCTGGGCTACCTCTTCGGCGGCGGCGAGACGGCTCCCGCGGCGAAGGCGAA CGGTCTTGCAGCGGCGGAGAAGGAGACTACGCCGGCGCCAGTTAAGAAGGCGGCGGTGGCGGCNGCGGCGTCGCGTTCGGCAGCNGAGAAGATGAAGGAGATCCCCGCGGGGATACAAAGCACCCAGGCCAACAACTACTTCCGGGCGCAGGGCCAGAATTNCGGCAACTTCCTCACGGATNGGCCGTTTAAACCAAGGGTGCACG                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU091687             [                                                                                                                                                                                                                                                         CGTCGNCAGCGGAGAAGATGAAGGAGATCCCCGCGGGGATACAAAGCACCCAGGCCAACAACTACTTCCGGGCGCAGGGCCAGAATTGCGGCAACTTCCTCACGGATCGGCCG  TCAACCAA GGTGCACGCTGCTCCGGGCGGCGGCTCGTCGCTCGGCTACCTCTTCGGCGGCAAGTGATGCGAAAAAAAAAGAAGAAAGAATCCTCTGCTCGAGAAATTTCTCTCTAGCAGATAACGTGATTATTTTTAAACCTGCTTTTGTGTAGATTGCCTGTGTATTGTGTGTTGTGATGTGTTCTTGTGTGATTTGCAGCTACTTAAAAAAAAAACTTAACTAGTTCTGCAGGCTCTGATGGCTGTATCAGCCACTGGCATAAAATGCTCAGATGGTGTTAATTCTTCGAGTTAGTATGCTTGGAATGCAGTTGTAACTTGTAAACATTTACATGACCATGTCTCTGTTTCCTTCAAGTTGTCTACTCCACTTTATATTAGTCATGCTGAAGTAGTAGGTGGCAAAAAA]




>consensus_10445#0
GCTCTTCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCGCATCATCGCCGTCGAAGCG
TAGAGGGAGTAAGGGGAGGATGGGGAGAGGAAGAGGGGTGAGCAGCGGGGGAGGGCAGAG
CTCGCTGGGCTACCTCTTCGGCGGCGGCGAGACGGCTCCCGCGGCGAAGGCGAACCGNCT
GCAGCGGCGGAGAAGGAGACTACGCCGGCGCCAGTGAAGAAGGCGGCGGTGGCGGCGGCG
GCGTCGCCGTCGGCAGCGGAGAAGATGAAGGAGATCCCCGCGGGGATACAAAGCACCCAG
GCCAACAACTACTTCCGGGCGCAGGGCCAGAATTGCGGCAACTTCCTCACGGATCGGCCG
TCAACCAAGGTGCACGCTGCTCCGGGCGGCGGCTCGTCGCTCGGCTACCTCTTCGGCGGC
AAGTGATGCGAAAAAAAAAGAAGAAAGAATCCTCTGCTCGAGAAATTTCTCTCTAGCAGA
TAACGTGATTATTTTTAAACCTGCTTTTGTGTAGATTGCCTGTGTATTGTGTGTTGTGAT
GTGTTCTTGTGTGATTTGCAGCTACTTAAAAAAAAAACTTAACTAGTTCTGCAGGCTCTG
ATGGCTGTATCAGCCACTGGCATAAAATGCTCAGATGGTGTTAATTCTTCGAGTTAGTAT
GCTTGGAATGCAGTTGTAACTTGTAAACATTTACATGACCATGTCTCTGTTTCCTTCAAG
TTGTCTACTCCACTTTATATTAGTCATGCTGAAGTAGTAGGTGGCAAAAAA

consensusID : consensus_10445#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 190
fasta sequence

                              [TGTGTTCTTGTGTGATTTGCAGCTACTTAAAAAAAAACTTAACTAGTTCTGCAGGCTCTGATGGCTGTATCAGCCACTGGCATAAAATGCTCAGATGGTGTTAATTCTTCGAGTTAGTATGCTTGGAATGCAGTTGTAACTTGTAAACATTTACATGACCATGTCTCTGTTTCCTTCAAAAAAAAAAAAA]

[+] EMBL CF302000             [TGTGTTCTTGTGTGATTTGCAGCTACTTAAAAAAAAACTTAACTAGTTCTGCAGGCTCTGATGGCTGTATCAGCCACTGGCATAAAATGCTCAGATGGTGTTAATTCTTCGAGTTAGTATGCTTGGAATGCAGTTGTAACTTGTAAACATTTACATGACCATGTCTCTGTTTCCTTCAAAAAAAAAAAA ]
[-] EMBL CF301999             [ GTGTTCTTGTGTGATTTGCAGCTACTTAAAAAAAAACTTAACTAGTTTTGCAGGCTTTGATGGCTGTATCAGCCACTGGCATAAAATGCTCAGATGGTGTTAATTTTTCGAGTTAGTATGCTTGGAATGCAGTTGTAACTTGTAAACATTTACATGACCATGTCTCTGTTTCCTTCCAAAAAAAAAAAA]




>consensus_10445#1
TGTGTTCTTGTGTGATTTGCAGCTACTTAAAAAAAAACTTAACTAGTTCTGCAGGCTCTG
ATGGCTGTATCAGCCACTGGCATAAAATGCTCAGATGGTGTTAATTCTTCGAGTTAGTAT
GCTTGGAATGCAGTTGTAACTTGTAAACATTTACATGACCATGTCTCTGTTTCCTTCAAA
AAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10445#0      GCTCTTCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCGCATCATCGCCGTCGAAGCG 60
consensus_10445#1      ------------------------------------------------------------
                                                                                   

consensus_10445#0      TAGAGGGAGTAAGGGGAGGATGGGGAGAGGAAGAGGGGTGAGCAGCGGGGGAGGGCAGAG 120
consensus_10445#1      ------------------------------------------------------------
                                                                                   

consensus_10445#0      CTCGCTGGGCTACCTCTTCGGCGGCGGCGAGACGGCTCCCGCGGCGAAGGCGAACCGNCT 180
consensus_10445#1      ------------------------------------------------------------
                                                                                   

consensus_10445#0      GCAGCGGCGGAGAAGGAGACTACGCCGGCGCCAGTGAAGAAGGCGGCGGTGGCGGCGGCG 240
consensus_10445#1      ------------------------------------------------------------
                                                                                   

consensus_10445#0      GCGTCGCCGTCGGCAGCGGAGAAGATGAAGGAGATCCCCGCGGGGATACAAAGCACCCAG 300
consensus_10445#1      ------------------------------------------------------------
                                                                                   

consensus_10445#0      GCCAACAACTACTTCCGGGCGCAGGGCCAGAATTGCGGCAACTTCCTCACGGATCGGCCG 360
consensus_10445#1      ------------------------------------------------------------
                                                                                   

consensus_10445#0      TCAACCAAGGTGCACGCTGCTCCGGGCGGCGGCTCGTCGCTCGGCTACCTCTTCGGCGGC 420
consensus_10445#1      ------------------------------------------------------------
                                                                                   

consensus_10445#0      AAGTGATGCGAAAAAAAAAGAAGAAAGAATCCTCTGCTCGAGAAATTTCTCTCTAGCAGA 480
consensus_10445#1      ------------------------------------------------------------
                                                                                   

consensus_10445#0      TAACGTGATTATTTTTAAACCTGCTTTTGTGTAGATTGCCTGTGTATTGTGTGTTGTGAT 540
consensus_10445#1      -----------------------------------------------------------T 1
                                                                                  *

consensus_10445#0      GTGTTCTTGTGTGATTTGCAGCTACTTAAAAAAAAAACTTAACTAGTTCTGCAGGCTCTG 600
consensus_10445#1      GTGTTCTTGTGTGATTTGCAGCTACTTAAAAAAAAA-CTTAACTAGTTCTGCAGGCTCTG 60
                       ************************************ ***********************

consensus_10445#0      ATGGCTGTATCAGCCACTGGCATAAAATGCTCAGATGGTGTTAATTCTTCGAGTTAGTAT 660
consensus_10445#1      ATGGCTGTATCAGCCACTGGCATAAAATGCTCAGATGGTGTTAATTCTTCGAGTTAGTAT 120
                       ************************************************************

consensus_10445#0      GCTTGGAATGCAGTTGTAACTTGTAAACATTTACATGACCATGTCTCTGTTTCCTTCAAG 720
consensus_10445#1      GCTTGGAATGCAGTTGTAACTTGTAAACATTTACATGACCATGTCTCTGTTTCCTTCAAA 180
                       *********************************************************** 

consensus_10445#0      TTGTCTACTCCACTTTATATTAGTCATGCTGAAGTAGTAGGTGGCAAAAAA 771
consensus_10445#1      AAAAAAAAAA----------------------------------------- 190
                             *