These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10446#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 936 fasta sequence [AGAGGTAGCGGCGGCGTTCTCCTGCTCCCGCCGCATTCGCTCACCGACACCGGTGAGGGTGAATCCATCCCATCCGGCCTCCAGTTTCGTCTCCTCGATCGCCCCGCCGCTTGCTTGCGCCGATCCCCATCCTGCGCCCGGCGTCCTCCTGCTTCCCACCGCATCGTCGCTCGCCGCTCCCCATCCCACCACTAATGGTCTCTCTCCGGCTCATCGCCGCATTCGCGCCCGCTCCGCCACCGCCACCGCCACCGCGGCCCCGACGAGCGCCGCCGTCCGCGGCGCGCCTGGCGAGCAACGGCATAGCCTTTGTCACTGTGGCAGCCGTAGCCGCTGCCTCGCCGCCAGCGATCGCCGCGCTGGCCGCCGAGCCGGCCAACGCGCTCTCGCTGCCCACTTGGGCCGTCCACGTCTCCAGCGTCGCCGAGTGGGTGACGGCTATGGCGCTGGTTTGGGACTACGGTGAGAGGACGGGGCTCAAGGGTTGGAAAGGCCTCTCTTGGGGAATGGTTCCACTTCTTGGTGGAGCGATGTGCGCTTGCACGTGGCATTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTCCAAGGTGCTCTAACA-GTGATTGGTAACA-TTACAATGTGCATAGCTGCATTTCGCATCTTCAAAGCATCCCAGGAAAGCTCAAAAAGTTCATAGAGTTACACCTGACATGAAATGGCA-AACGGCAGATGCTGCGAAGGAAGAAGATAAAAGCTGCTGATGGCTTGCAGCTACTTCAGAAAGATGTTTGTATGTATCAATTCTACAAATGCCAGCTAAAGCCA-CCCTGAAATTTGTGTATTGACTTGGTTTTTTTCTAGACAATGAGTGTATTTACTCAGATAAGAAGAAAAATTACCTCACCTGCTATAAAAAAAAAATCNNNNNNNANNANNNNANNAAAAAA] [+] EMBL AK065013 [AGAGGTAGCGGCGGCGTTCTCCTGCTCCCGCCGCATTCGCTCACCGACACCGGTGAGGGTGAATCCATCCCATCCGGCCTCCAGTTTCGTCTCCTCGATCGCCCCGCCGCTTGCTTGCGCCGATCCCCATCCTGCGCCCGGCGTCCTCCTGCTTCCCACCGCATCGTCGCTCGCCGCTCCCCATCCCACCACTAATGGTCTCTCTCCGGCTCATCGCCGCATTCGCGCCCGCTCCGCCACCGCCACCGCCACCGCGGCCCCGACGAGCGCCGCCGTCCGCGGCGCGCCTGGCGAGCAACGGCATAGCCTTTGTCACTGTGGCAGCCGTAGCCGCTGCCTCGCCGCCAGCGATCGCCGCGCTGGCCGCCGAGCCGGCCAACGCGCTCTCGCTGCCCACTTGGGCCGTCCACGTCTCCAGCGTCGCCGAGTGGGTGACGGCTATGGCGCTGGTTTGGGACTACGGTGAGAGGACGGGGCTCAAGGGTTGGAAAGGCCTCTCTTGGGGAATGGTTCCACTTCTTGGTGGAGCGATGTGCGCTTGCACGTGGCATTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTCCAAGGTGCTCTAACA GTGATTGGTAACA TTACAATGTGCATAGCTGCATTTCGCATCTTCAAAGCATCCCAGGAAAGCTCAAAAAGTTCATAGAGTTACACCTGACATGAAATGGCA AACGGCAGATGCTGCGAAGGAAGAAGATAAAAGCTGCTGATGGCTTGCAGCTACTTCAGAAAGATGTTTGTATGTATCAATTCTACAAATGCCAGCTAAAGCCA CCCTGAAATTTGTGTATTGACTTGGTTTTTTTCTAGACAATGAGTGTATTTACTCAGATAAGAAGAAAAATTAC ] [+] EMBL AK104861 [ GGCGGCGTTCTCCTGCTCCCGCCGCATTCGCTCACCGACACCGGTGAGGGTGAATCCATCCCATCCGGCCTCCAGTTTCGTCTCCTCGATCGCCCCGCCGCTTGCTTGCGCCGATCCCCATCCTGCGCCCGGCGTCCTCCTGCTTCCCACCGCATCGTCGCTCGCCGCTCCCCATCCCACCACTAATGGTCTCTCTCCGGCTCATCGCCGCATTCGCGCCCGCTCCGCCACCGCCACCGCCACCGCGGCCCCGACGAGCGCCGCCGTCCGCGGCGCGCCTGGCGAGCAACGGCATAGCCTTTGTCACTGTGGCAGCCGTAGCCGCTGCCTCGCCGCCAGCGATCGCCGCGCTGGCCGCCGAGCCGGCCAACGCGCTCTCGCTGCCCACTTGGGCCGTCCACGTCTCCAGCGTCGCCGAGTGGGTGACGGCTATGGCGCTGGTTTGGGACTACGGTGAGAGGACGGGGCTCAAGGGTTGGAAAGGCCTCTCTTGGGGAATGGTTCCACTTCTTGGTGGAGCGATGTGCGCTTGCACGTGGCATTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTCCAAGGTGCTCTAACA GTGATTGGTAACA TTACAATGTGCATAGCTGCATTTCGCATCTTCAAAGCATCCCAGGAAAGCTCAAAAAGTTCATAGAGTTACACCTGACATGAAATGGCA AACGGCAGATGCTGCGAAGGAAGAAGATAAAAGCTGCTGATGGCTTGCAGCTACTTCAGAAAGATGTTTGTATGTATCAATTCTACAAATGCCAGCTAAAGCCA CCCTGAAATTTGTGTATTGACTTGGTTTTTTTCTAGACAATGAGTGTATTTACTCAGATAAGAAGAAAAATTACCT ] [+] EMBL CF325016 [ CGGCGTTCTCCTGCTCCCGCCGCATTCGCTCACCGACACCGGTGAGGGTGAATCCATCCCATCCGGCCTCCAGTTTCGTCTCCTCGATCGCCCCGCCGCTTGCTTGCGCCGATCCCCATCCTGCGCCCGGCGTCCTCCTGCTTCCCACCGCATCGTCGCTCGCCGCTCCCCATCCCACCACTAATGGTCTCTCTCCGGCTCATCGCCGCATTCGCGCCCGCTCCGCCACCGCCACCGCCACCGCGGCCCCGACGAGCGCCGCCGTCCGCGGCGCGCCTGGCGAGCAACGGCATAGCCTTTGTCACTGTGGCAGCCGTAGCCGCTGCCTCGCCGCCAGCGATCGCCGCGCTGGCCGCCGAGCCGGCCAACGCGCTCTCGCTGCCCACTTGGGCCGTCCACGTCTCCAGCGTCGCCGAGTGGGTGACGGCTATGGCGCTGGTTTGGGACTACGGTGAGAGGACGGGGCTCAAGGGTTGGAAAGGCCTCTCTTGGGGAATGGTTCCACTTCTTGGTGGAGCGATGTGCGCTTGCACGTG ] [+] EMBL BI812756 [ tgcACGGCTATGGCCCT GTTTGGGACTACGGTGAGA GACGGGGCTCAA GGTTGGAAAGGCCTCTCTTGGGGAATGGTTCCACTTCTTGGTGGA CGATGTGCGCTTGCACGTGGCATTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTCC AGGTGCTCTAACACGTGATTGGTAACACTTACCATGTGCATA CTGCATTTCGCATCTTCAAAGCATCCCAGGAAAGCTCCAAAAGTTCATAGAGTTACACCTGACATGAAATGGCACAACGGCAGATGCTGCGAAGGAAGAAGATAAAAGCTGCTGATGGCTTGCAGCTACTTCAGAAAGATGTTTGTATGTATCAATTCTACCAATGCCAGCTAAAGCCACCCCTGAAATTTGTGTATTGACTTGGTTTTTTTCTAGACAATGAGTGTATTTACTCAGATAAGAAGAAAAATTACCTCACCTGCTATAAAAAAAAAA ] [+] EMBL CA753908 [ GTTCCACTTCTTGGTGGAGCGATGTGCGCTTGCACGTGGCATTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTCCAAGGTGCTCTAACA GTGATTGGTAACA TTACAATGTGCATAGCTGCATTTCGCATCTTCAAAGCATCCCAGGAAAGCTCAAAAAGTTCATAGAGTTACACCTGACATGAAATGGCA AACGGCAGATGCTGCGAAGGAAGAAGATAAAAGCTGCTGATGGCTTGCAGCTACTTCAGAAAGATGTTTGTATGTATCAATTCTACAAATGCCAGCTAAAGCCA CCCTGAAATTTGTGTATTGACTTGGTTTTTTTCTAGACAATGAGTGTATTTACTCAGATAAGAAGAAAAATTACCTCACCTGCTATAGCCTATGCCTCNNNNNNNANNANNNNANNAAAAAA] consensusID : consensus_10446#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence [CCCATCCTGCGCCCGGCGTCCTCCTGCTTCCCACCGCATCGTCGCTCGCCGCTCCCCATCCCACCACTAATGGTCTCTCTCCGGCTCATCGCCGCATTCGCGCCCGCTCCGCCACCGCCACCGCCACCGCGGCCCCGACTAGCGCCGCCGTCCGCGGCGCGCCTGGCGAGCAACGGCATAGCCTTTGTCACTGTGGCAGCCGTAGCCGCTGCCTCGCCGCCAGCGATCGCCGCGCTGGCCGCCGAGCCGGCCAACGCGCTCTCGCTGCCCACTTGGGCCGTCCACGTCTCCAGCGTCGCCGAGTGGGTGACGGCTATGGCGCTGGTTTGGGACTACGGTGAGAGGACGGGGCTCAAGGGTTGGAAAGGCCTCTCTTGGGGAATGGTTCCACTTCTTGGTGGAGCGATGTGCGCTTGCACGTGGCATTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTCCAAGGTGCTCTAACAGTGATTGGTAACATTACAATGTGCATAGCTGCATTTCGCATCTTCAAAGCATCCCAGGAAAGCTCAAAAAGTTCATAGAGGTACCTGTATGCATATATACA] [+] EMBL CF326555 [CCCATCCTGCGCCCGGCGTCCTCCTGCTTCCCACCGCATCGTCGCTCGCCGCTCCCCATCCCACCACTAATGGTCTCTCTCCGGCTCATCGCCGCATTCGCGCCCGCTCCGCCACCGCCACCGCCACCGCGGCCCCGACTAGCGCCGCCGTCCGCGGCGCGCCTGGCGAGCAACGGCATAGCCTTTGTCACTGTGGCAGCCGTAGCCGCTGCCTCGCCGCCAGCGATCGCCGCGCTGGCCGCCGAGCCGGCCAACGCGCTCTCGCTGCCCACTTGGGCCGTCCACGTCTCCAGCGTCGCCGAGTGGGTGACGGCTATGGCGCTGGTTTGGGACTACGGTGAGAGGACGGGGCTCAAGGGTTGGAAAGGCCTCTCTTGGGGAATGGTTCCACTTCTTGGTGGAGCGATGTGCGCTTGCACGTGGCATTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTCCAAGGTGCTCTAACAGTGATTGGTAACATTACAATGTGCATAGCTGCATTTCGCATCTTCAAAGCATCCCAGGAAAGCTCAAAAAGTTCATAGAGGTACCTGTATGCATATATACA] consensusID : consensus_10446#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence [GGGAATGGTTCCACCTTCTTGGTGGAGCGATGTGCGCTTGCACGTGGCACTTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTCCCAGGTGCTCTAACCCGTGATTGGTAACCTTACCATGTGCATAGCTGCCTTTCGCATCTTCCAAGCATCCCACGGAAAGCTCCAAAAGTTCATAGAGTTACACCCTGACACTGAAATGGCCAACGGCAGATGCTGCGAAGGAAGAAGATAAAAGCTGCTGATGGCTTGCAGCTACTTCAGAAAGATGTTTGTATGTATCCATTCTACCAATGCCAGCTAAAGCCCCCCTGAAATTTGTGTATTGACTTGGTTTTTTTCTAGACCATGAGTGTATTTACTCAGATAAGAAGAAAAATTACCTCACCTGCTATAGCCTATGCCTCAACTCATCTTCAACTGTTTTGAACCAAAAAAAAAA] [+] EMBL BI813014 [GGGAATGGTTCCACCTTCTTGGTGGAGCGATGTGCGCTTGCACGTGGCACTTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTCCCAGGTGCTCTAACCCGTGATTGGTAACCTTACCATGTGCATAGCTGCCTTTCGCATCTTCCAAGCATCCCACGGAAAGCTCCAAAAGTTCATAGAGTTACACCCTGACACTGAAATGGCCAACGGCAGATGCTGCGAAGGAAGAAGATAAAAGCTGCTGATGGCTTGCAGCTACTTCAGAAAGATGTTTGTATGTATCCATTCTACCAATGCCAGCTAAAGCCCCCCTGAAATTTGTGTATTGACTTGGTTTTTTTCTAGACCATGAGTGTATTTACTCAGATAAGAAGAAAAATTACCTCACCTGCTATAGCCTATGCCTCAACTCATCTTCAACTGTTTTGAACCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10446#0 AGAGGTAGCGGCGGCGTTCTCCTGCTCCCGCCGCATTCGCTCACCGACACCGGTGAGGGT 60 consensus_10446#1 ------------------------------------------------------------ consensus_10446#2 ------------------------------------------------------------ consensus_10446#0 GAATCCATCCCATCCGGCCTCCAGTTTCGTCTCCTCGATCGCCCCGCCGCTTGCTTGCGC 120 consensus_10446#1 ------------------------------------------------------------ consensus_10446#2 ------------------------------------------------------------ consensus_10446#0 CGATCCCCATCCTGCGCCCGGCGTCCTCCTGCTTCCCACCGCATCGT-CGCTCGC-CGCT 178 consensus_10446#1 -----CCCATCCTGCGCCCGGCGTCCTCCTGCTTCCCACCGCATCGT-CGCTCGC-CGCT 53 consensus_10446#2 -------------GGGAATGGT-TCCACCTTCTTGGTGGAGCGATGTGCGCTTGCACGTG 46 * * ** *** *** *** ** ** **** ** ** consensus_10446#0 CCCCATCCCACCACTAAT-GGTCTCTCTCCGGCTCATCGCCGCATTCGCGCCCGCTCCGC 237 consensus_10446#1 CCCCATCCCACCACTAAT-GGTCTCTCTCCGGCTCATCGCCGCATTCGCGCCCGCTCCGC 112 consensus_10446#2 GCACTTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTCCCAGGTGCTCTAA 106 * * * * * * * * ** ***** * * * ** ** * **** consensus_10446#0 CACCGCCACCGCCACCGCGGCCCCGACGAGCGCCGCCGTCCGCGGCGCGCCTGGCGAGCA 297 consensus_10446#1 CACCGCCACCGCCACCGCGGCCCCGACTAGCGCCGCCGTCCGCGGCGCGCCTGGCGAGCA 172 consensus_10446#2 C-CCGTGATTGGTAACCTTACCATGTGCATAGCTGCCTTTCGCATCTT-CCAAGCATCCC 164 * *** * * * * ** * * ** *** * *** * ** ** * consensus_10446#0 ACGGCATAGCCTTTGTCACTGTGGCAGCCGTAGCCGCTGCCTCGCCGCCAGCGATCGCCG 357 consensus_10446#1 ACGGCATAGCCTTTGTCACTGTGGCAGCCGTAGCCGCTGCCTCGCCGCCAGCGATCGCCG 232 consensus_10446#2 ACGGAA-AGCTCCAAAAGTTCATAGAGTTACACC--CTGACACTGAAATGGCCAACG--G 219 **** * *** * ** * * *** * * ** * ** * consensus_10446#0 CGCTGGCCGCCGAGCCGGCCAACGCGCTCTCGCTGCCCACTTGGGCCGTCCACGTCTCCA 417 consensus_10446#1 CGCTGGCCGCCGAGCCGGCCAACGCGCTCTCGCTGCCCACTTGGGCCGTCCACGTCTCCA 292 consensus_10446#2 CAGATGCTGCGAAGGAAGAAGATAAAAGCT-GCTGATGGCTTG---CAGCTACTTCAGAA 275 * ** ** ** * * ** **** **** * * ** ** * consensus_10446#0 GCGTCGCCGAGTGGGTGACGGCTAT-GGCGCTGGTTTGGGACTACGGTGAGAGGACGGGG 476 consensus_10446#1 GCGTCGCCGAGTGGGTGACGGCTAT-GGCGCTGGTTTGGGACTACGGTGAGAGGACGGGG 351 consensus_10446#2 AGATGTTTGTATGTATCCATTCTACCAATGCCAGCTAAAGCCCCCC---------TGAAA 326 * * ** * *** ** * * * * * * consensus_10446#0 CTCAAGGGTTGGAAAGGCCTCTCT-TGGGGAATGGTTCCACTTCTT--GGTGGAGCGATG 533 consensus_10446#1 CTCAAGGGTTGGAAAGGCCTCTCT-TGGGGAATGGTTCCACTTCTT--GGTGGAGCGATG 408 consensus_10446#2 TTTGTGTATTGACTTGGTTTTTTTCTAGACCATGAGTGTATTTACTCAGATAAGAAGAAA 386 * * *** ** * * * * * *** * * ** * * * ** consensus_10446#0 TGCGCTTGCACGTGGCATTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTC 593 consensus_10446#1 TGCGCTTGCACGTGGCATTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTC 468 consensus_10446#2 AATTACCTCACCTGCTATAGC--CTATGCCTCAACTCATCTTCAACTGTTTTGAACCAAA 444 *** ** ** * **** ** **** ** ** ** * * consensus_10446#0 CAAGGTGCTCTAACAGTGATTGGTAACATTACAATGTGCATAGCTGCATTTCGCATCTTC 653 consensus_10446#1 CAAGGTGCTCTAACAGTGATTGGTAACATTACAATGTGCATAGCTGCATTTCGCATCTTC 528 consensus_10446#2 AAAAAAA----------------------------------------------------- 451 ** consensus_10446#0 AAAGCATCCCAGGAAAGCTCAAAAAGTTCATAGAGTTACACCTGACATGAAATGGCAAAC 713 consensus_10446#1 AAAGCATCCCAGGAAAGCTCAAAAAGTTCATAGAGGTAC--CTG-TATGCATATATACA- 584 consensus_10446#2 ------------------------------------------------------------ consensus_10446#0 GGCAGATGCTGCGAAGGAAGAAGATAAAAGCTGCTGATGGCTTGCAGCTACTTCAGAAAG 773 consensus_10446#1 ------------------------------------------------------------ consensus_10446#2 ------------------------------------------------------------ consensus_10446#0 ATGTTTGTATGTATCAATTCTACAAATGCCAGCTAAAGCCACCCTGAAATTTGTGTATTG 833 consensus_10446#1 ------------------------------------------------------------ consensus_10446#2 ------------------------------------------------------------ consensus_10446#0 ACTTGGTTTTTTTCTAGACAATGAGTGTATTTACTCAGATAAGAAGAAAAATTACCTCAC 893 consensus_10446#1 ------------------------------------------------------------ consensus_10446#2 ------------------------------------------------------------ consensus_10446#0 CTGCTATAAAAAAAAAATCNNNNNNNANNANNNNANNAAAAAA 936 consensus_10446#1 ------------------------------------------- consensus_10446#2 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||