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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10446#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 936 fasta sequence
[AGAGGTAGCGGCGGCGTTCTCCTGCTCCCGCCGCATTCGCTCACCGACACCGGTGAGGGTGAATCCATCCCATCCGGCCTCCAGTTTCGTCTCCTCGATCGCCCCGCCGCTTGCTTGCGCCGATCCCCATCCTGCGCCCGGCGTCCTCCTGCTTCCCACCGCATCGTCGCTCGCCGCTCCCCATCCCACCACTAATGGTCTCTCTCCGGCTCATCGCCGCATTCGCGCCCGCTCCGCCACCGCCACCGCCACCGCGGCCCCGACGAGCGCCGCCGTCCGCGGCGCGCCTGGCGAGCAACGGCATAGCCTTTGTCACTGTGGCAGCCGTAGCCGCTGCCTCGCCGCCAGCGATCGCCGCGCTGGCCGCCGAGCCGGCCAACGCGCTCTCGCTGCCCACTTGGGCCGTCCACGTCTCCAGCGTCGCCGAGTGGGTGACGGCTATGGCGCTGGTTTGGGACTACGGTGAGAGGACGGGGCTCAAGGGTTGGAAAGGCCTCTCTTGGGGAATGGTTCCACTTCTTGGTGGAGCGATGTGCGCTTGCACGTGGCATTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTCCAAGGTGCTCTAACA-GTGATTGGTAACA-TTACAATGTGCATAGCTGCATTTCGCATCTTCAAAGCATCCCAGGAAAGCTCAAAAAGTTCATAGAGTTACACCTGACATGAAATGGCA-AACGGCAGATGCTGCGAAGGAAGAAGATAAAAGCTGCTGATGGCTTGCAGCTACTTCAGAAAGATGTTTGTATGTATCAATTCTACAAATGCCAGCTAAAGCCA-CCCTGAAATTTGTGTATTGACTTGGTTTTTTTCTAGACAATGAGTGTATTTACTCAGATAAGAAGAAAAATTACCTCACCTGCTATAAAAAAAAAATCNNNNNNNANNANNNNANNAAAAAA]
[+] EMBL AK065013 [AGAGGTAGCGGCGGCGTTCTCCTGCTCCCGCCGCATTCGCTCACCGACACCGGTGAGGGTGAATCCATCCCATCCGGCCTCCAGTTTCGTCTCCTCGATCGCCCCGCCGCTTGCTTGCGCCGATCCCCATCCTGCGCCCGGCGTCCTCCTGCTTCCCACCGCATCGTCGCTCGCCGCTCCCCATCCCACCACTAATGGTCTCTCTCCGGCTCATCGCCGCATTCGCGCCCGCTCCGCCACCGCCACCGCCACCGCGGCCCCGACGAGCGCCGCCGTCCGCGGCGCGCCTGGCGAGCAACGGCATAGCCTTTGTCACTGTGGCAGCCGTAGCCGCTGCCTCGCCGCCAGCGATCGCCGCGCTGGCCGCCGAGCCGGCCAACGCGCTCTCGCTGCCCACTTGGGCCGTCCACGTCTCCAGCGTCGCCGAGTGGGTGACGGCTATGGCGCTGGTTTGGGACTACGGTGAGAGGACGGGGCTCAAGGGTTGGAAAGGCCTCTCTTGGGGAATGGTTCCACTTCTTGGTGGAGCGATGTGCGCTTGCACGTGGCATTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTCCAAGGTGCTCTAACA GTGATTGGTAACA TTACAATGTGCATAGCTGCATTTCGCATCTTCAAAGCATCCCAGGAAAGCTCAAAAAGTTCATAGAGTTACACCTGACATGAAATGGCA AACGGCAGATGCTGCGAAGGAAGAAGATAAAAGCTGCTGATGGCTTGCAGCTACTTCAGAAAGATGTTTGTATGTATCAATTCTACAAATGCCAGCTAAAGCCA CCCTGAAATTTGTGTATTGACTTGGTTTTTTTCTAGACAATGAGTGTATTTACTCAGATAAGAAGAAAAATTAC ]
[+] EMBL AK104861 [ GGCGGCGTTCTCCTGCTCCCGCCGCATTCGCTCACCGACACCGGTGAGGGTGAATCCATCCCATCCGGCCTCCAGTTTCGTCTCCTCGATCGCCCCGCCGCTTGCTTGCGCCGATCCCCATCCTGCGCCCGGCGTCCTCCTGCTTCCCACCGCATCGTCGCTCGCCGCTCCCCATCCCACCACTAATGGTCTCTCTCCGGCTCATCGCCGCATTCGCGCCCGCTCCGCCACCGCCACCGCCACCGCGGCCCCGACGAGCGCCGCCGTCCGCGGCGCGCCTGGCGAGCAACGGCATAGCCTTTGTCACTGTGGCAGCCGTAGCCGCTGCCTCGCCGCCAGCGATCGCCGCGCTGGCCGCCGAGCCGGCCAACGCGCTCTCGCTGCCCACTTGGGCCGTCCACGTCTCCAGCGTCGCCGAGTGGGTGACGGCTATGGCGCTGGTTTGGGACTACGGTGAGAGGACGGGGCTCAAGGGTTGGAAAGGCCTCTCTTGGGGAATGGTTCCACTTCTTGGTGGAGCGATGTGCGCTTGCACGTGGCATTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTCCAAGGTGCTCTAACA GTGATTGGTAACA TTACAATGTGCATAGCTGCATTTCGCATCTTCAAAGCATCCCAGGAAAGCTCAAAAAGTTCATAGAGTTACACCTGACATGAAATGGCA AACGGCAGATGCTGCGAAGGAAGAAGATAAAAGCTGCTGATGGCTTGCAGCTACTTCAGAAAGATGTTTGTATGTATCAATTCTACAAATGCCAGCTAAAGCCA CCCTGAAATTTGTGTATTGACTTGGTTTTTTTCTAGACAATGAGTGTATTTACTCAGATAAGAAGAAAAATTACCT ]
[+] EMBL CF325016 [ CGGCGTTCTCCTGCTCCCGCCGCATTCGCTCACCGACACCGGTGAGGGTGAATCCATCCCATCCGGCCTCCAGTTTCGTCTCCTCGATCGCCCCGCCGCTTGCTTGCGCCGATCCCCATCCTGCGCCCGGCGTCCTCCTGCTTCCCACCGCATCGTCGCTCGCCGCTCCCCATCCCACCACTAATGGTCTCTCTCCGGCTCATCGCCGCATTCGCGCCCGCTCCGCCACCGCCACCGCCACCGCGGCCCCGACGAGCGCCGCCGTCCGCGGCGCGCCTGGCGAGCAACGGCATAGCCTTTGTCACTGTGGCAGCCGTAGCCGCTGCCTCGCCGCCAGCGATCGCCGCGCTGGCCGCCGAGCCGGCCAACGCGCTCTCGCTGCCCACTTGGGCCGTCCACGTCTCCAGCGTCGCCGAGTGGGTGACGGCTATGGCGCTGGTTTGGGACTACGGTGAGAGGACGGGGCTCAAGGGTTGGAAAGGCCTCTCTTGGGGAATGGTTCCACTTCTTGGTGGAGCGATGTGCGCTTGCACGTG ]
[+] EMBL BI812756 [ tgcACGGCTATGGCCCT GTTTGGGACTACGGTGAGA GACGGGGCTCAA GGTTGGAAAGGCCTCTCTTGGGGAATGGTTCCACTTCTTGGTGGA CGATGTGCGCTTGCACGTGGCATTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTCC AGGTGCTCTAACACGTGATTGGTAACACTTACCATGTGCATA CTGCATTTCGCATCTTCAAAGCATCCCAGGAAAGCTCCAAAAGTTCATAGAGTTACACCTGACATGAAATGGCACAACGGCAGATGCTGCGAAGGAAGAAGATAAAAGCTGCTGATGGCTTGCAGCTACTTCAGAAAGATGTTTGTATGTATCAATTCTACCAATGCCAGCTAAAGCCACCCCTGAAATTTGTGTATTGACTTGGTTTTTTTCTAGACAATGAGTGTATTTACTCAGATAAGAAGAAAAATTACCTCACCTGCTATAAAAAAAAAA ]
[+] EMBL CA753908 [ GTTCCACTTCTTGGTGGAGCGATGTGCGCTTGCACGTGGCATTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTCCAAGGTGCTCTAACA GTGATTGGTAACA TTACAATGTGCATAGCTGCATTTCGCATCTTCAAAGCATCCCAGGAAAGCTCAAAAAGTTCATAGAGTTACACCTGACATGAAATGGCA AACGGCAGATGCTGCGAAGGAAGAAGATAAAAGCTGCTGATGGCTTGCAGCTACTTCAGAAAGATGTTTGTATGTATCAATTCTACAAATGCCAGCTAAAGCCA CCCTGAAATTTGTGTATTGACTTGGTTTTTTTCTAGACAATGAGTGTATTTACTCAGATAAGAAGAAAAATTACCTCACCTGCTATAGCCTATGCCTCNNNNNNNANNANNNNANNAAAAAA]
consensusID : consensus_10446#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence
[CCCATCCTGCGCCCGGCGTCCTCCTGCTTCCCACCGCATCGTCGCTCGCCGCTCCCCATCCCACCACTAATGGTCTCTCTCCGGCTCATCGCCGCATTCGCGCCCGCTCCGCCACCGCCACCGCCACCGCGGCCCCGACTAGCGCCGCCGTCCGCGGCGCGCCTGGCGAGCAACGGCATAGCCTTTGTCACTGTGGCAGCCGTAGCCGCTGCCTCGCCGCCAGCGATCGCCGCGCTGGCCGCCGAGCCGGCCAACGCGCTCTCGCTGCCCACTTGGGCCGTCCACGTCTCCAGCGTCGCCGAGTGGGTGACGGCTATGGCGCTGGTTTGGGACTACGGTGAGAGGACGGGGCTCAAGGGTTGGAAAGGCCTCTCTTGGGGAATGGTTCCACTTCTTGGTGGAGCGATGTGCGCTTGCACGTGGCATTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTCCAAGGTGCTCTAACAGTGATTGGTAACATTACAATGTGCATAGCTGCATTTCGCATCTTCAAAGCATCCCAGGAAAGCTCAAAAAGTTCATAGAGGTACCTGTATGCATATATACA]
[+] EMBL CF326555 [CCCATCCTGCGCCCGGCGTCCTCCTGCTTCCCACCGCATCGTCGCTCGCCGCTCCCCATCCCACCACTAATGGTCTCTCTCCGGCTCATCGCCGCATTCGCGCCCGCTCCGCCACCGCCACCGCCACCGCGGCCCCGACTAGCGCCGCCGTCCGCGGCGCGCCTGGCGAGCAACGGCATAGCCTTTGTCACTGTGGCAGCCGTAGCCGCTGCCTCGCCGCCAGCGATCGCCGCGCTGGCCGCCGAGCCGGCCAACGCGCTCTCGCTGCCCACTTGGGCCGTCCACGTCTCCAGCGTCGCCGAGTGGGTGACGGCTATGGCGCTGGTTTGGGACTACGGTGAGAGGACGGGGCTCAAGGGTTGGAAAGGCCTCTCTTGGGGAATGGTTCCACTTCTTGGTGGAGCGATGTGCGCTTGCACGTGGCATTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTCCAAGGTGCTCTAACAGTGATTGGTAACATTACAATGTGCATAGCTGCATTTCGCATCTTCAAAGCATCCCAGGAAAGCTCAAAAAGTTCATAGAGGTACCTGTATGCATATATACA]
consensusID : consensus_10446#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence
[GGGAATGGTTCCACCTTCTTGGTGGAGCGATGTGCGCTTGCACGTGGCACTTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTCCCAGGTGCTCTAACCCGTGATTGGTAACCTTACCATGTGCATAGCTGCCTTTCGCATCTTCCAAGCATCCCACGGAAAGCTCCAAAAGTTCATAGAGTTACACCCTGACACTGAAATGGCCAACGGCAGATGCTGCGAAGGAAGAAGATAAAAGCTGCTGATGGCTTGCAGCTACTTCAGAAAGATGTTTGTATGTATCCATTCTACCAATGCCAGCTAAAGCCCCCCTGAAATTTGTGTATTGACTTGGTTTTTTTCTAGACCATGAGTGTATTTACTCAGATAAGAAGAAAAATTACCTCACCTGCTATAGCCTATGCCTCAACTCATCTTCAACTGTTTTGAACCAAAAAAAAAA]
[+] EMBL BI813014 [GGGAATGGTTCCACCTTCTTGGTGGAGCGATGTGCGCTTGCACGTGGCACTTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTCCCAGGTGCTCTAACCCGTGATTGGTAACCTTACCATGTGCATAGCTGCCTTTCGCATCTTCCAAGCATCCCACGGAAAGCTCCAAAAGTTCATAGAGTTACACCCTGACACTGAAATGGCCAACGGCAGATGCTGCGAAGGAAGAAGATAAAAGCTGCTGATGGCTTGCAGCTACTTCAGAAAGATGTTTGTATGTATCCATTCTACCAATGCCAGCTAAAGCCCCCCTGAAATTTGTGTATTGACTTGGTTTTTTTCTAGACCATGAGTGTATTTACTCAGATAAGAAGAAAAATTACCTCACCTGCTATAGCCTATGCCTCAACTCATCTTCAACTGTTTTGAACCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10446#0 AGAGGTAGCGGCGGCGTTCTCCTGCTCCCGCCGCATTCGCTCACCGACACCGGTGAGGGT 60
consensus_10446#1 ------------------------------------------------------------
consensus_10446#2 ------------------------------------------------------------
consensus_10446#0 GAATCCATCCCATCCGGCCTCCAGTTTCGTCTCCTCGATCGCCCCGCCGCTTGCTTGCGC 120
consensus_10446#1 ------------------------------------------------------------
consensus_10446#2 ------------------------------------------------------------
consensus_10446#0 CGATCCCCATCCTGCGCCCGGCGTCCTCCTGCTTCCCACCGCATCGT-CGCTCGC-CGCT 178
consensus_10446#1 -----CCCATCCTGCGCCCGGCGTCCTCCTGCTTCCCACCGCATCGT-CGCTCGC-CGCT 53
consensus_10446#2 -------------GGGAATGGT-TCCACCTTCTTGGTGGAGCGATGTGCGCTTGCACGTG 46
* * ** *** *** *** ** ** **** ** **
consensus_10446#0 CCCCATCCCACCACTAAT-GGTCTCTCTCCGGCTCATCGCCGCATTCGCGCCCGCTCCGC 237
consensus_10446#1 CCCCATCCCACCACTAAT-GGTCTCTCTCCGGCTCATCGCCGCATTCGCGCCCGCTCCGC 112
consensus_10446#2 GCACTTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTCCCAGGTGCTCTAA 106
* * * * * * * * ** ***** * * * ** ** * ****
consensus_10446#0 CACCGCCACCGCCACCGCGGCCCCGACGAGCGCCGCCGTCCGCGGCGCGCCTGGCGAGCA 297
consensus_10446#1 CACCGCCACCGCCACCGCGGCCCCGACTAGCGCCGCCGTCCGCGGCGCGCCTGGCGAGCA 172
consensus_10446#2 C-CCGTGATTGGTAACCTTACCATGTGCATAGCTGCCTTTCGCATCTT-CCAAGCATCCC 164
* *** * * * * ** * * ** *** * *** * ** ** *
consensus_10446#0 ACGGCATAGCCTTTGTCACTGTGGCAGCCGTAGCCGCTGCCTCGCCGCCAGCGATCGCCG 357
consensus_10446#1 ACGGCATAGCCTTTGTCACTGTGGCAGCCGTAGCCGCTGCCTCGCCGCCAGCGATCGCCG 232
consensus_10446#2 ACGGAA-AGCTCCAAAAGTTCATAGAGTTACACC--CTGACACTGAAATGGCCAACG--G 219
**** * *** * ** * * *** * * ** * ** *
consensus_10446#0 CGCTGGCCGCCGAGCCGGCCAACGCGCTCTCGCTGCCCACTTGGGCCGTCCACGTCTCCA 417
consensus_10446#1 CGCTGGCCGCCGAGCCGGCCAACGCGCTCTCGCTGCCCACTTGGGCCGTCCACGTCTCCA 292
consensus_10446#2 CAGATGCTGCGAAGGAAGAAGATAAAAGCT-GCTGATGGCTTG---CAGCTACTTCAGAA 275
* ** ** ** * * ** **** **** * * ** ** *
consensus_10446#0 GCGTCGCCGAGTGGGTGACGGCTAT-GGCGCTGGTTTGGGACTACGGTGAGAGGACGGGG 476
consensus_10446#1 GCGTCGCCGAGTGGGTGACGGCTAT-GGCGCTGGTTTGGGACTACGGTGAGAGGACGGGG 351
consensus_10446#2 AGATGTTTGTATGTATCCATTCTACCAATGCCAGCTAAAGCCCCCC---------TGAAA 326
* * ** * *** ** * * * * * *
consensus_10446#0 CTCAAGGGTTGGAAAGGCCTCTCT-TGGGGAATGGTTCCACTTCTT--GGTGGAGCGATG 533
consensus_10446#1 CTCAAGGGTTGGAAAGGCCTCTCT-TGGGGAATGGTTCCACTTCTT--GGTGGAGCGATG 408
consensus_10446#2 TTTGTGTATTGACTTGGTTTTTTTCTAGACCATGAGTGTATTTACTCAGATAAGAAGAAA 386
* * *** ** * * * * * *** * * ** * * * **
consensus_10446#0 TGCGCTTGCACGTGGCATTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTC 593
consensus_10446#1 TGCGCTTGCACGTGGCATTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTC 468
consensus_10446#2 AATTACCTCACCTGCTATAGC--CTATGCCTCAACTCATCTTCAACTGTTTTGAACCAAA 444
*** ** ** * **** ** **** ** ** ** * *
consensus_10446#0 CAAGGTGCTCTAACAGTGATTGGTAACATTACAATGTGCATAGCTGCATTTCGCATCTTC 653
consensus_10446#1 CAAGGTGCTCTAACAGTGATTGGTAACATTACAATGTGCATAGCTGCATTTCGCATCTTC 528
consensus_10446#2 AAAAAAA----------------------------------------------------- 451
**
consensus_10446#0 AAAGCATCCCAGGAAAGCTCAAAAAGTTCATAGAGTTACACCTGACATGAAATGGCAAAC 713
consensus_10446#1 AAAGCATCCCAGGAAAGCTCAAAAAGTTCATAGAGGTAC--CTG-TATGCATATATACA- 584
consensus_10446#2 ------------------------------------------------------------
consensus_10446#0 GGCAGATGCTGCGAAGGAAGAAGATAAAAGCTGCTGATGGCTTGCAGCTACTTCAGAAAG 773
consensus_10446#1 ------------------------------------------------------------
consensus_10446#2 ------------------------------------------------------------
consensus_10446#0 ATGTTTGTATGTATCAATTCTACAAATGCCAGCTAAAGCCACCCTGAAATTTGTGTATTG 833
consensus_10446#1 ------------------------------------------------------------
consensus_10446#2 ------------------------------------------------------------
consensus_10446#0 ACTTGGTTTTTTTCTAGACAATGAGTGTATTTACTCAGATAAGAAGAAAAATTACCTCAC 893
consensus_10446#1 ------------------------------------------------------------
consensus_10446#2 ------------------------------------------------------------
consensus_10446#0 CTGCTATAAAAAAAAAATCNNNNNNNANNANNNNANNAAAAAA 936
consensus_10446#1 -------------------------------------------
consensus_10446#2 -------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||