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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10449#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1192 fasta sequence
[GCTCAGTGGAGGGAGAAGACCATCACCACCATGGGCGCCAGCCTG-AGCCTCGTGCCGCTCCTCGACTACTTCGCGCGCCGGGAGTTCGCCGCCGCCGGCCTCAGCCCCGGCGCCGTCACGCTGCCGTACCCGGGCGACGGCGGCGAGGCGACCTGCACCGTCCACTACTGGGCCTCCACGGGGGAGCCGCTGCTGCCGCCGCTGCTGCTCGTGCATGGGTTCGGCCCACGGGCCACCTGGCAGTGGCGCTGCCAGGTGGGCCCACTGTCCCGGCATTTCCACCTCATCGTGCCCGACCTCATCGGCTTCGGCGGCAGCTCGTTC-GGCGGCGACTCCGCCGCCTCGCCGCCGTCGGAGGCTACGCAGGCGGCGGCGCTGGCGGCGCTGCTGGACGCGCTGCCGGGGATGAAGGGGAGGCGGGTGGCGGTGGCGGGGACCAGCTACGGCGGGTTCGTGGCGTACTGGCTGGCGCGCACGGCGGGGGCCGGGAGGGTTGGCCCCGTGGTGATCGCGAGCTCCGACCTGCTCAAGACGGCGGCGGACGACCGGGGGTTCCTGAAGAGGGCCGGCGACGGGTGGAGCGGCGTGGAGGAGGTGCTCCTGCCGGCCGAGCCCGCCGCGATGCGGAAGCTGCTGGAGATGGCCTCGTGCCGGCCGCCGCCGCCGGTGCTGATGCCGGACTTCATCCTCCGCGACTTCATCCAGAAACTTTTCACGGAGAACAGAGAGCAACTTATTCAACTCTTCAAGGGGATCACAGTTGGCACAGACAAGTTCCCAGTAACTCCAATATCTCAGGAAGTGTTGATTGTCTGGGGAGAGCAAGATCAGTTGTTCCCGGTTGAGAAGGCTTATGCAGTTCAGAGTTCTTTGGATGGGAAAGCTAGAGTGGAAATCATAAGCAAAACAGGCCATGCTCCACAGCTGGAGGATCCAACCCGGTTCAACAAGATCCTGCTAGACTTCTTGCTGGCTACTCACAAGCCTGATCCTTCGTCAAATGGCGCATCGCAATAAGTCGGATGCCCACTCGAATATTTGATTGATTGAAATAAGATGGTTAGCCACCTTCGTCCATTCATAGCTAAAATTTGTACTACGAATTATTTGAGAACGCACATTGAGAAATAATTAAAGAAAATGGGTGGATTGTTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK108257 [GCTCAGTGGAGGGAGAAGACCATCACCACCATGGGCGCCAGCCTG AGCCTCGTGCCGCTCCTCGACTACTTCGCGCGCCGGGAGTTCGCCGCCGCCGGCCTCAGCCCCGGCGCCGTCACGCTGCCGTACCCGGGCGACGGCGGCGAGGCGACCTGCACCGTCCACTACTGGGCCTCCACGGGGGAGCCGCTGCTGCCGCCGCTGCTGCTCGTGCATGGGTTCGGCCCACGGGCCACCTGGCAGTGGCGCTGCCAGGTGGGCCCACTGTCCCGGCATTTCCACCTCATCGTGCCCGACCTCATCGGCTTCGGCGGCAGCTCGTTC GGCGGCGACTCCGCCGCCTCGCCGCCGTCGGAGGCTACGCAGGCGGCGGCGCTGGCGGCGCTGCTGGACGCGCTGCCGGGGATGAAGGGGAGGCGGGTGGCGGTGGCGGGGACCAGCTACGGCGGGTTCGTGGCGTACTGGCTGGCGCGCACGGCGGGGGCCGGGAGGGTTGGCCCCGTGGTGATCGCGAGCTCCGACCTGCTCAAGACGGCGGCGGACGACCGGGGGTTCCTGAAGAGGGCCGGCGACGGGTGGAGCGGCGTGGAGGAGGTGCTCCTGCCGGCCGAGCCCGCCGCGATGCGGAAGCTGCTGGAGATGGCCTCGTGCCGGCCGCCGCCGCCGGTGCTGATGCCGGACTTCATCCTCCGCGACTTCATCCAGAAACTTTTCACGGAGAACAGAGAGCAACTTATTCAACTCTTCAAGGGGATCACAGTTGGCACAGACAAGTTCCCAGTAACTCCAATATCTCAGGAAGTGTTGATTGTCTGGGGAGAGCAAGATCAGTTGTTCCCGGTTGAGAAGGCTTATGCAGTTCAGAGTTCTTTGGATGGGAAAGCTAGAGTGGAAATCATAAGCAAAACAGGCCATGCTCCACAGCTGGAGGATCCAACCCGGTTCAACAAGATCCTGCTAGACTTCTTGCTGGCTACTCACAAGCCTGATCCTTCGTCAAATGGCGCATCGCAATAAGTCGGATGCCCACTCGAATATTTGATTGATTGAAATAAGATGGTTAGCCACCTTCGTCCATTCATAGCTAAAATTTGTACTACGAATTATTTGAGAACGCACATTGAGAAATAATTAAAGAAAATGGGTGGATTGTT ]
[+] EMBL AU184607 [ CAGTGGAGGGAGAAGACCATCACCACCATGGGCGCCAGCCTG AGCCTCGTGCCGCTCCTCGACTACTTCGCGCGCCGGGAGTTCGCCGCCGCCGGCCTCAGCCCCGGCGCCGTCACGCTGCCGTACCCGGGCGACGGCGGCGAGGCGACCTGCACCGTCCACTACTGGGCCTCCACGGGGGAGCCGCTGCTGCCGCCGCTGCTGCTCGTGCATGGGTTCGGCCCACGGGCCACCTGGCAGTGGCGCTGCCAGGTGGGCCCACTGTCCNGGCATTTACACCTCATCATGCCCGA ]
[+] EMBL AU032296 [ AGTGGAGGGAGAAGACCATCACCACCATGGGCGCCA CTGNAGCCTCGTGCCGCTCCTCGACTACTTCGCGCGCCGGGAGTTCGCCGCCGCCGGCCTCAGCCCCGGCGCCGTCACGCTGCCGTACCCGGGCGACGGCGGCGAGGCGACCTGCACCGTCCACTACTGGGCCTCCACGGGGGAGCCGCTGCTGCCGCCGCTGCTGCTCGTGCATGGGTTCGGCCCACGGGCCACCTGGCAGTGGCGCTGCCAGGTGGGCCCACTGTCCCGGCATTTCCACCTCATCGTGCCCGANCTCATCGGCTTCGGCGGCAGCTCGTTCGGGCGGCGACTCCGCCGCTTCGCCG ]
[+] EMBL C71766 [ GGGAGAAGACCATCACCACCATGGGCGCCAG NTGNAGCCTCGTGCCGCTCCTCGACTACTTCGCGCGCCGGGAGTTCGCCGCCGCCGGCCTCAGCCCCGGCGCCGTCACGCTGCCGTACCCGGGCAACGGCGGCGAGGCGACCTGCACCGTCCACTACTGGGCCTCCACGGGGNAGCCGCTGCT ]
[+] EMBL C73718 [ ACGGGTGGAGCGGCGTGGAGGAGGTGCTCCTGCCGGCCGAGCCCGCCGCGATGCGGAAGCTGCTGGAGATGGCCTCGTGCCGGCCGCCGCCGCCGGTGCTGATGCCGGACTTCATCCTCCGCGACTTCATCCAGAAACTTTTCACGGAGAACAGAGAGCAACTTATTCAACTCTTCAAGGGGATCACAGTTGGCACAGACAAGTTCCCAGTAACTCCAATATCTCAGGAAGTGTTGATTGTCTGGGGAGAGCAAGATCAGTTGTTCCCGGTTGAGAA GNTTATGCAGTTCAGAGTTCTTTGGATGGG AAGTTAGAGTGGAAATCATAAGCAAAACAGGCatt ]
[+] EMBL AU172743 [ GACAAGTTCCCAGTAACTCCAATATCTCAGGAAGTGTTGATTGTNTGGGGANAGCAAGATCAGTTGTTCCCGGTTGANAAGGCTTATGCAGTTCANAGTTCTTTGGATGGGAAAGCTAGAGTGGAAATCATAAGCAAAACAGGCCATGCTCCNCAGCTGGAGGATCCAACCCGGTTCAACAAGATCCTGCTAGACTTCTTGCTGGCTACTCNCAAGCCTGATCCTTCGTCAAATGGCGCATCGCAATAAGTCGGATGCCCNCTCGAATATTTGATTGATTGAAATAANATGGTTAGCCNCCTTCGTCCATTCATAGCTAAAATTTGTACTACGAATTATTTGAGAACGCCCATTGAGAAATAATTAAANAAAATGGGTGGATTGTTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_10449#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence
[CACTTATTCGACTCTTCAAGGGGATCACAGTTGGCACAGACAAGTTCCCAGTAACTCCCATATGTCAGGAAGTGTTGATTGTCTGGGGAGACAAGATCAGTTGTTCCCGGTTGAGAAGGCTTATCACGTTCAGAGGTAATGGATAGTAACATACTAGTACGAAGCTTCCATTTCAGTATTTAACTGAACACGGATTGACGTTTCCTGCACCAAATTCGCTCTGTCCAGTTCTTTGGATGGGAAAGCTAGAGTGGAAATCATAAGTAAAACACGGCCATGCTCCACAGCTGGAGGATCCCACCCGGTTCAACAGATCCTGCTAGACTTCTTGCTGGCTACTCACAAGCCTGATCCTTCGTCAAATGGCGCATCGCAATAAGTCGGATGCCACTCGAATATTTGATTGATTGAAATAAGATGGTTAGCCACCTTCGTCCAAAAAAAAAA]
[+] EMBL BI805079 [CACTTATTCGACTCTTCAAGGGGATCACAGTTGGCACAGACAAGTTCCCAGTAACTCCCATATGTCAGGAAGTGTTGATTGTCTGGGGAGACAAGATCAGTTGTTCCCGGTTGAGAAGGCTTATCACGTTCAGAGGTAATGGATAGTAACATACTAGTACGAAGCTTCCATTTCAGTATTTAACTGAACACGGATTGACGTTTCCTGCACCAAATTCGCTCTGTCCAGTTCTTTGGATGGGAAAGCTAGAGTGGAAATCATAAGTAAAACACGGCCATGCTCCACAGCTGGAGGATCCCACCCGGTTCAACAGATCCTGCTAGACTTCTTGCTGGCTACTCACAAGCCTGATCCTTCGTCAAATGGCGCATCGCAATAAGTCGGATGCCACTCGAATATTTGATTGATTGAAATAAGATGGTTAGCCACCTTCGTCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10449#0 GCTCAGTGGAGGGAGAAGACCATCACCACCATGGGCGCCAGCCTGAGCCTCGTGCCGCTC 60
consensus_10449#1 ------------------------------------------------------------
consensus_10449#0 CTCGACTACTTCGCGCGCCGGGAGTTCGCCGCCGCCGGCCTCAGCCCCGGCGCCGTCACG 120
consensus_10449#1 ------------------------------------------------------------
consensus_10449#0 CTGCCGTACCCGGGCGACGGCGGCGAGGCGACCTGCACCGTCCACTACTGGGCCTCCACG 180
consensus_10449#1 ------------------------------------------------------------
consensus_10449#0 GGGGAGCCGCTGCTGCCGCCGCTGCTGCTCGTGCATGGGTTCGGCCCACGGGCCACCTGG 240
consensus_10449#1 ------------------------------------------------------------
consensus_10449#0 CAGTGGCGCTGCCAGGTGGGCCCACTGTCCCGGCATTTCCACCTCATCGTGCCCGACCTC 300
consensus_10449#1 ------------------------------------------------------------
consensus_10449#0 ATCGGCTTCGGCGGCAGCTCGTTCGGCGGCGACTCCGCCGCCTCGCCGCCGTCGGAGGCT 360
consensus_10449#1 ------------------------------------------------------------
consensus_10449#0 ACGCAGGCGGCGGCGCTGGCGGCGCTGCTGGACGCGCTGCCGGGGATGAAGGGGAGGCGG 420
consensus_10449#1 ------------------------------------------------------------
consensus_10449#0 GTGGCGGTGGCGGGGACCAGCTACGGCGGGTTCGTGGCGTACTGGCTGGCGCGCACGGCG 480
consensus_10449#1 ------------------------------------------------------------
consensus_10449#0 GGGGCCGGGAGGGTTGGCCCCGTGGTGATCGCGAGCTCCGACCTGCTCAAGACGGCGGCG 540
consensus_10449#1 ------------------------------------------------------------
consensus_10449#0 GACGACCGGGGGTTCCTGAAGAGGGCCGGCGACGGGTGGAGCGGCGTGGAGGAGGTGCTC 600
consensus_10449#1 ------------------------------------------------------------
consensus_10449#0 CTGCCGGCCGAGCCCGCCGCGATGCGGAAGCTGCTGGAGATGGCCTCGTGCCGGCCGCCG 660
consensus_10449#1 ---------------------------------CACTTATTCGACTCTTCAAGGGGATCA 27
* * * *** * ** *
consensus_10449#0 CCGCCGGTGCTGATGCCGGACTTCATCCTCCGCGACTTCATCCAGAAACTTTTCACGGAG 720
consensus_10449#1 CAGTTGGCACAGACAAGTTCCCAGTAACTCCCATATGTCAGGAAGTGTTGATTGTCTGGG 87
* * ** * ** * **** * *** ** ** * * *
consensus_10449#0 AACAGAGAGCAACTTATTCAACTCTTCAAGGGGATCACAGTTGGCACAGACAAGTTCCCA 780
consensus_10449#1 GAGACAAGATCAGTTGTTCC-CGGTTGAGAAGGCTTATCACGTTCAGAGGTAA-TGGATA 145
* * * * ** *** * ** * ** * * ** ** ** * *
consensus_10449#0 GTAACTCCAATATCTCAGGAAGTGTTGATTGT----CTGGGGAGAGCAAGATCAGTTGTT 836
consensus_10449#1 GTAAC---ATACTAGTACGAAGCTTCCATTTCAGTATTTAACTGAACACGGATTGACGTT 202
***** * * * **** * *** * ** ** * * ***
consensus_10449#0 CCCGGTTGAGAAGGCTTATGCAGTTCAGAGTTCTTTGGATGGGAAAGCTAGAGTGGAAAT 896
consensus_10449#1 TCCTGC--ACCAAATTCGCTCTGTCCA--GTTCTTTGGATGGGAAAGCTAGAGTGGAAAT 258
** * * * * * ** ** *******************************
consensus_10449#0 CATAAGCAAAACA-GGCCATGCTCCACAGCTGGAGGATCCAACCCGGTTCAACAAGATCC 955
consensus_10449#1 CATAAGTAAAACACGGCCATGCTCCACAGCTGGAGGATCCCACCCGGTTCAACA-GATCC 317
****** ****** ************************** ************* *****
consensus_10449#0 TGCTAGACTTCTTGCTGGCTACTCACAAGCCTGATCCTTCGTCAAATGGCGCATCGCAAT 1015
consensus_10449#1 TGCTAGACTTCTTGCTGGCTACTCACAAGCCTGATCCTTCGTCAAATGGCGCATCGCAAT 377
************************************************************
consensus_10449#0 AAGTCGGATGCCCACTCGAATATTTGATTGATTGAAATAAGATGGTTAGCCACCTTCGTC 1075
consensus_10449#1 AAGTCGGATGCC-ACTCGAATATTTGATTGATTGAAATAAGATGGTTAGCCACCTTCGTC 436
************ ***********************************************
consensus_10449#0 CATTCATAGCTAAAATTTGTACTACGAATTATTTGAGAACGCACATTGAGAAATAATTAA 1135
consensus_10449#1 CA---AAAAAAAAA---------------------------------------------- 447
** * * ***
consensus_10449#0 AGAAAATGGGTGGATTGTTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1192
consensus_10449#1 ---------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||