cluster # 10455

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10455 cluster # 10455 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10455#0 length = 953 sequences # 5

consensus_10455#1 length = 688 sequences # 2

consensusID : consensus_10455#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 953
fasta sequence

                              [CAGAGGCATCAGCCAAGCC-CACGTCTCGAAGCTTCTTGTAACAGGAGCTAGGGTTAGGTCTCCGAGCCTCCGACCTTCCGATTCCTCTCCGCCGGCAGCCATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTTCCAGCGCATGGTCGCAAAGATGCAGGAGGTTGCTGGTGAACGGGGAGGTTACCTTCATGGGCGAGGAGCATTGGACAGTGATGATTTACTGTACCTAAAAGAACAAATGGAAGCTGAGGAAGACGCAGAGCGTCTTCTTCGCCGTACTGAGAAGCGTGCATTTGCTGCTTTTAAGAAAGCAGCAATTTTAGCTGATTCTACACCTGCTGTTCCTGCGGCTCTTCGAGTCGAGCCTAAATCTAAAAGCGATATCAGGCAACAAGATCTCTTGAAGAATATTGTCGGGATCAAACCGAAACGGACAAAAGTTAGCAGCCCTTCACAACCAGCAGAGAACGATAAACCTAAGCAGAGCCCAGAAGATTCTGTCAACAAAGTGTCCTCCCCGCAGAGCCAATCAGGATCCAGGAAGGAATCATCTCAGCGGGACGGGGCAGTCAGTTTTGAGAAGCCTTTGTTGAAACCAGTTGAACCGAGAGAGTCCAAGCCACAGAATGCAACTGGAAGCTTGCTCGGTTTAGCTTACGAGAGTTCAGATGAAGAATGATCATTGGTTTAGATGGAAAGCAGAACTAGTGTGTAGATTGTATATTAGGCATTTTGTACTGCTTGCTAGAGCATGTTTTGTACCTGGATTTGTTAAAAGCTGCTTAAAGCTGTTTTTTTTTCTTTTTTACAATTTTTCCTATGTAAACAAACGGTTGAAATTGGACGGAACTCATGGTTTAAAGTTTACATGCGTACTTAAAAAA]

[+] EMBL CF331311             [CAGAGGCATCAGCCAAGCC CACGTCTCGAAGCTTCTTGTAACAGGAGCTAGGGTTAGGTCTCCGAGCCTCCGACCTTCCGATTCCTCTCCGCCGGCAGCCATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGATAGGAA  GGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTTCCAGCGCATGGTCGCAAAGATGCAGGAGGTTGCTGGTGAACGGGGAGGTTACCTTCATGGGCGAGGAGCATTGGACAGTGATGATTTACTGTACCTAAAAGAACAAATGGAAGCTGAGGAAGACGCAGAGCGTCTTCTTCGCCGTACTGAGAAGCGTGCATTTGCTGCTTTTAAGAAAGCAGCAATTTTAGCTGATTCTACACCTGCTGTTCCTGCGGTTCTTCGAGTCGAGCCTAAATCTAAAAGCGATATCAGGCAACAAGATCTCTTGAAGAATATTGTCGGGATCAAACCGAAACGGACAAAAGTTAGCAGCCCTTCACAACCAGCAGAGAACGATAAACCTAAGCAGAGCCCAGAAGATTCTGTCAACAA                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AK110708             [  GAGGCATCAGCCAAGCCACACGTCTCGAAGCTTCTTGTAACAGGAGCTAGGGTTAGGTCTCCGAGCCTCCGACCTTCCGATTCCTCTCCGCCGGCAGCCATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTTCCAGCGCATGGTCGCAAAGATGCAGGAGGTTGCTGGTGAACGGGGAGGTTACCTTCATGGGCGAGGAGCATTGGACAGTGATGATTTACTGTACCTAAAAGAACAAATGGAAGCTGAGGAAGACGCAGAGCGTCTTCTTCGCCGTACTGAGAAGCGTGCATTTGCTGCTTTTAAGAAAGCAGCAATTTTAGCTGATTCTACACCTGCTGTTCCTGCGGCTCTTCGAGTCGAGCCTAAACCTAAAAGCGATATCAGGCAACAAGATCTCTTGAAGAATATTGTCGGGATCAAACCGAAACGGACAAAAGTTAGCAGCCCTTCACAACCAGCAGAGAACGATAAACCTAAGCAGAGCCCAGAAGATTCTGTCAACAAAGTGTCCTCCCCGCAGAGCCAATCAGGATCCAGGAAGGAATCATCTCAGCGGGACGGGGCAGTCAGTTTTGAGAAGCCTTTGTTGAAACCAGTTGAACCGAGAGAGTCCAAGCCACAGAATGCAACTGGAAGCTTGCTCGGTTTAGCTTACGAGAGTTCAGATGAAGAATGATCATTGGTTTAGATGGAAAGCAGAACTAGTGTGTAGATTGTATATTAGGCATTTTGTACTGCTTGCTAGAGCATGTTTTGTACCTGGATTTGTTAAAAGCTGCTTAAAGCTGTTTTTTTTTCTTTTTTACAATTTTTCCTATGTAAACAAACGGTTGAAATTGGACGGAACTCATGG                            ]
[+] EMBL CA765797             [                                                                        GACCTTCCGATTCCTCTCCGCCGGCAGCCATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTTCCAGCGCATGGTCGCAAAGATGCAGGAGGTTGCTGGTGAACGGGGAGGTTACCTTCATGGGAGAGGAGCATTGGACAGTGGTGATTTACTGTACCTAAAAGAACAAATGGAAGCTGAGGAAGACGCAGAGCGTCTTCTTCGCCGTACTGAGAAGCGTGCATTTGCTGCTTTTAAGAAAGCAGCAATTTTAGCTGATTCTACACCTGCTGTTCCTGCGGCTCTTCGAGTCGAGCCTAAACCTAAAAGCGATATCAGGCAACAAGATCTCTTGAAGAATATTGTCGGGATCAAACCGAAACGGACAAAAGTTAGCAGCCCTTCACAACCAGCCGAGAACGATAAACCTAAGCAGAGCCCAGAAGATTCTGTCAACAAAGTGTCCTCCCCCCAGAGCCAATCAGGATCCAGGAAGGAATCATCTCAGCGGGACGGGGCAGTCAGTTTTGAGAAGCCTTTGNTGAAACCAGTTGAACCGAGAGAGTCCAAGCCACAGAATGCAACTGGAAGCTTGCTCGGTTTAGCTTA                                                                                                                                                                                                                                   ]
[-] EMBL CF331312             [                                                                                                                                                                                                                                                                                                                                                                                 CTTTTAAGAAAGCAGCAATTTTAGCTGATTCTACACCTGCTGTTCCTGCGGCTCTTCGAGTCGAGCCTAAATCTAAAAGCGATATCAGGCAACAAGATCTCTTGAAGAATATTGTCGGGATCAAACCGAAACGGACAAAAGTTAGCAGCCCTTCACAACCAGCAGAGAACGATAAACCTAAGCAGAGCCCAGAAGATTCTGTCAACAAAGTGTCCTCCCCGCAGAGCCAATCAGGATCCAGGAAGGAATCATCTCAGCGGGACGGGGCAGTCAGTTTTGAGAAGCCTTTGTTGAAACCAGTTGAACCGAGAGAGTCCAAGCCACAGAATGCAACTGGAAGCTTGCTCGGTTTAGCTTACGAGAGTTCAGATGAAGAATGATCATTGGTTTAGATGGAAAGCAGAACTAGTGTGTAGATTGTATATTAGGCATTTTGTACTGCTTGCTAGAGCATGTTTTGTACCTGGATTTGTTAAAAGCTGCTTAAAGCTGTTTTTTTTTCTTTTTTACAATTTTTCCTATGTAAACAAACGGTTGAAATTGGACGGAACTCATGGTTTAAAGTTTACATGCGTACTTAAAAAA]
[+] EMBL AA750154             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TCATCTCAGCGGGACGGGGCAGTCAGTTTTGAGAAGCCTTTGTTGAAACCAGTTGAACCGAGAGAGTCCAAGCCACAGAATGCAACTGGAAGCTTGCTCGGTTTAGCTTACGAGAGTTCAGATGAAGAATGATCATTGGTTTAGATGGAAAGCAGAACTAGTGTGTAGATTGTATA TAGGCA  TSGTACTGCTTGCTA                                                                                                                                         ]




>consensus_10455#0
CAGAGGCATCAGCCAAGCCCACGTCTCGAAGCTTCTTGTAACAGGAGCTAGGGTTAGGTC
TCCGAGCCTCCGACCTTCCGATTCCTCTCCGCCGGCAGCCATGTCAGGTCGCGAGGTCCG
CGAGTACACGAATCTCAGCGACCCCAAAGATAGGAAGTGGGGGAAGGGGAAGGACAAGAT
TGATGATGAGGACATCACCTTCCAGCGCATGGTCGCAAAGATGCAGGAGGTTGCTGGTGA
ACGGGGAGGTTACCTTCATGGGCGAGGAGCATTGGACAGTGATGATTTACTGTACCTAAA
AGAACAAATGGAAGCTGAGGAAGACGCAGAGCGTCTTCTTCGCCGTACTGAGAAGCGTGC
ATTTGCTGCTTTTAAGAAAGCAGCAATTTTAGCTGATTCTACACCTGCTGTTCCTGCGGC
TCTTCGAGTCGAGCCTAAATCTAAAAGCGATATCAGGCAACAAGATCTCTTGAAGAATAT
TGTCGGGATCAAACCGAAACGGACAAAAGTTAGCAGCCCTTCACAACCAGCAGAGAACGA
TAAACCTAAGCAGAGCCCAGAAGATTCTGTCAACAAAGTGTCCTCCCCGCAGAGCCAATC
AGGATCCAGGAAGGAATCATCTCAGCGGGACGGGGCAGTCAGTTTTGAGAAGCCTTTGTT
GAAACCAGTTGAACCGAGAGAGTCCAAGCCACAGAATGCAACTGGAAGCTTGCTCGGTTT
AGCTTACGAGAGTTCAGATGAAGAATGATCATTGGTTTAGATGGAAAGCAGAACTAGTGT
GTAGATTGTATATTAGGCATTTTGTACTGCTTGCTAGAGCATGTTTTGTACCTGGATTTG
TTAAAAGCTGCTTAAAGCTGTTTTTTTTTCTTTTTTACAATTTTTCCTATGTAAACAAAC
GGTTGAAATTGGACGGAACTCATGGTTTAAAGTTTACATGCGTACTTAAAAAA

consensusID : consensus_10455#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 688
fasta sequence

                              [CCAGAGGCATCAGCCAAGCCACACGTCTCGAAGCTTCTTGTAACAGGAGCTAGGGTTAGGTCTCCGAGCCTCCGACCTTCCGATTCCTCTCCGCCGGCAGCCATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTTCCAGCGCATGGTCGCAAAGGGATTTTGGCTCTCTACTTGGCGGTTGATGACGACAGATGCAGGAGGTTGCTGGTGAACGGGGAGGTTACCTTCATGGGAGAGGAGCATTGGACAGTGATGATTTACTGCACCTAAAAGAACAAATGGAAGCTGAGGAAGACGCAGAGCGTCTTCTTCGCCGTACTGAGAAGCGTGCATTTGCTGCTTTTAAGATATCCTCTTCTTTTAGTCATAGCTTATGTTTTGCATAGTACAGTTTCATG-AAAAAAAAAAGGGACTATTAGCTCGATATAGCTCAAACCAGTCTTATGTCAAATTGCTTTTTTTTTTCCTTTTACATAATTACCTAATTTCCATTCACAGGTCAAAATAGCAGTATAGCATGATAGGAATAGCCACCAACCTGGGGTTTCTATGGTAGGTTCTATCAATCTCTTTGAGNTTCTTTAACTCTGACATCACAAAGCAGCAATTTTAGCTGATTC]

[+] EMBL CB096920             [CCAGAGGCATCAGCCAAGCCACACGTCTCGAAGCTTCTTGTAACAGGAGCTAGGGTTAGGTCTCCGAGCCTCCGACCTTCCGATTCCTCTCCGCCGGCAGCCATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTTCCAGCGCATGGTCGCAAAGGGATTTTGGCTCTCTACTTGGCGGTTGATGACGACAGATGCAGGAGGTTGCTGGTGAACGGGGAGGTTACCTTCATGGGAGAGGAGCATTGGACAGTGATGATTTACTGCACCTAAAAGAACAAATGGAAGCTGAGGAAGACGCAGAGCGTCTTCTTCGCCGTACTGAGAAGCGTGCATTTGCTGCTTTTAAGATATCCTCTTCTTTTAGTCATAGCTTATGTTTTGCATAGTACAGTTTCATG AAAAAAAAAAGGGACTATTAGCTCGATATAGCTCAAACCAGTCTTATGTCAAATTGCTTTTTTTTTTCCTTTTACATAATTACCTAATTTCCATTCACAGGTCAAAATAGCAGTATAGCATGATAGGAATAGCCACCAACCTGGGGTTTCTATGGTAGGTTCTATCAATCTCTTTGAGNTTCTTTAAC                                  ]
[+] EMBL CF325174             [                                                                                                                                                                                                                                                                                                           ttttttcAGCATTGGACAGTGATGATTTACTGTACCTAAAAGAACAAATGGAAGCTGAGGAAGACGCAGAGCGTCTTCTTCGCCGTACTGAGAAGCGTGCATTTGCTGCTTTTAAGATATCCTCTTCTTTTAGTCATAGCTTATGTTTTGCATAGTACAGTTTCATGAAAAAAAAAAAGGGACTATTAGCTCAATATAGCTCAAACCAGTCTTATGTCAAATTGCTTTTTTTTTTCCTTTTACATAATTACCTAATTTCCATTCACAGGTCAAAATAGCAGTATAGCATGATAGGAATAGCCACCAACCTGTGTTTTCTATGTTAGTTTCTATCAATCTCTTTGAGTTTCTTTAACTCTGACATCACAAAGCAGCAATTTTAGCTGATTC]




>consensus_10455#1
CCAGAGGCATCAGCCAAGCCACACGTCTCGAAGCTTCTTGTAACAGGAGCTAGGGTTAGG
TCTCCGAGCCTCCGACCTTCCGATTCCTCTCCGCCGGCAGCCATGTCAGGTCGCGAGGTC
CGCGAGTACACGAATCTCAGCGACCCCAAAGATAGGAAGTGGGGGAAGGGGAAGGACAAG
ATTGATGATGAGGACATCACCTTCCAGCGCATGGTCGCAAAGGGATTTTGGCTCTCTACT
TGGCGGTTGATGACGACAGATGCAGGAGGTTGCTGGTGAACGGGGAGGTTACCTTCATGG
GAGAGGAGCATTGGACAGTGATGATTTACTGCACCTAAAAGAACAAATGGAAGCTGAGGA
AGACGCAGAGCGTCTTCTTCGCCGTACTGAGAAGCGTGCATTTGCTGCTTTTAAGATATC
CTCTTCTTTTAGTCATAGCTTATGTTTTGCATAGTACAGTTTCATGAAAAAAAAAAGGGA
CTATTAGCTCGATATAGCTCAAACCAGTCTTATGTCAAATTGCTTTTTTTTTTCCTTTTA
CATAATTACCTAATTTCCATTCACAGGTCAAAATAGCAGTATAGCATGATAGGAATAGCC
ACCAACCTGGGGTTTCTATGGTAGGTTCTATCAATCTCTTTGAGNTTCTTTAACTCTGAC
ATCACAAAGCAGCAATTTTAGCTGATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10455#0      -CAGAGGCATCAGCCAAGCC-CACGTCTCGAAGCTTCTTGTAACAGGAGCTAGGGTTAGG 58
consensus_10455#1      CCAGAGGCATCAGCCAAGCCACACGTCTCGAAGCTTCTTGTAACAGGAGCTAGGGTTAGG 60
                        ******************* ***************************************

consensus_10455#0      TCTCCGAGCCTCCGACCTTCCGATTCCTCTCCGCCGGCAGCCATGTCAGGTCGCGAGGTC 118
consensus_10455#1      TCTCCGAGCCTCCGACCTTCCGATTCCTCTCCGCCGGCAGCCATGTCAGGTCGCGAGGTC 120
                       ************************************************************

consensus_10455#0      CGCGAGTACACGAATCTCAGCGACCCCAAAGATAGGAAGTGGGGGAAGGGGAAGGACAAG 178
consensus_10455#1      CGCGAGTACACGAATCTCAGCGACCCCAAAGATAGGAAGTGGGGGAAGGGGAAGGACAAG 180
                       ************************************************************

consensus_10455#0      ATTGATGATGAGGACATCACCTTCCAGCGCATGGTCGCAAAG------------------ 220
consensus_10455#1      ATTGATGATGAGGACATCACCTTCCAGCGCATGGTCGCAAAGGGATTTTGGCTCTCTACT 240
                       ******************************************                  

consensus_10455#0      -------------------ATGCAGGAGGTTGCTGGTGAACGGGGAGGTTACCTTCATGG 261
consensus_10455#1      TGGCGGTTGATGACGACAGATGCAGGAGGTTGCTGGTGAACGGGGAGGTTACCTTCATGG 300
                                          *****************************************

consensus_10455#0      GCGAGGAGCATTGGACAGTGATGATTTACTGTACCTAAAAGAACAAATGGAAGCTGAGGA 321
consensus_10455#1      GAGAGGAGCATTGGACAGTGATGATTTACTGCACCTAAAAGAACAAATGGAAGCTGAGGA 360
                       * ***************************** ****************************

consensus_10455#0      AGACGCAGAGCGTCTTCTTCGCCGTACTGAGAAGCGTGCATTTGCTGCTTTTAAGAAAGC 381
consensus_10455#1      AGACGCAGAGCGTCTTCTTCGCCGTACTGAGAAGCGTGCATTTGCTGCTTTTAAGATATC 420
                       ******************************************************** * *

consensus_10455#0      AGCAATTTTAGCTGATTCTACACCTGCTGT-TCCTGCGGCTCTTCGAGTCGAGCCTAAAT 440
consensus_10455#1      CTCTTCTTTTAGTCATAGCTTATGTTTTGCATAGTACAGTTTCATGAAAAAAAAAAGGGA 480
                         *   ***   * **     *  *  **  *  * * * *    **    *        

consensus_10455#0      CTAAAAGCGATATCAGGCAACAAGATCTCTTGAAGAATATTGTCGGGATCAAACCGAAAC 500
consensus_10455#1      CTATTAGCTCGATATAGCTCAAACCAGTCTTATGTCAAATTGCTTTTTTTTTTCCT---T 537
                       ***  ***   **   **   **    ****     * ****      *    **     

consensus_10455#0      GGACAAAAGTTAGCAGCCCTTCACAACCAGCAGAGAACGATAAACCTAAGCAGAGCCCAG 560
consensus_10455#1      TTACATAA-TTACCTAATTTCCATTCACAGGTCAAAATAGCAGTAT--AGCATGA--TAG 592
                         *** ** *** *     * **    ***   * **    *      ****      **

consensus_10455#0      AAGATTCTGTCAACAAAGTGTCCTCCCCGCAGAGCCAATCAGGATCCAGGAAGGAATC-- 618
consensus_10455#1      GAATAGCCACCAACCTGGGGTTTCTATGGTAGGTTCTATCAATCTCTTTGAGNTTCTTTA 652
                        *    *   ****   * **       * **   * ****   **   **     *   

consensus_10455#0      ATCTCAGCGGGACGGGGCAGTCAGTTTTGAGAAGCCTTTGTTGAAACCAGTTGAACCGAG 678
consensus_10455#1      ACTCTGACATCACAAAGCAGCAATTTTAGCTGATTC------------------------ 688
                       *      *   **   ****  * *** *   *  *                        

consensus_10455#0      AGAGTCCAAGCCACAGAATGCAACTGGAAGCTTGCTCGGTTTAGCTTACGAGAGTTCAGA 738
consensus_10455#1      ------------------------------------------------------------
                                                                                   

consensus_10455#0      TGAAGAATGATCATTGGTTTAGATGGAAAGCAGAACTAGTGTGTAGATTGTATATTAGGC 798
consensus_10455#1      ------------------------------------------------------------
                                                                                   

consensus_10455#0      ATTTTGTACTGCTTGCTAGAGCATGTTTTGTACCTGGATTTGTTAAAAGCTGCTTAAAGC 858
consensus_10455#1      ------------------------------------------------------------
                                                                                   

consensus_10455#0      TGTTTTTTTTTCTTTTTTACAATTTTTCCTATGTAAACAAACGGTTGAAATTGGACGGAA 918
consensus_10455#1      ------------------------------------------------------------
                                                                                   

consensus_10455#0      CTCATGGTTTAAAGTTTACATGCGTACTTAAAAAA 953
consensus_10455#1      -----------------------------------