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Oryza sativa
cluster # 10456 cluster # 10456       Sequences # 7       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10456#0 length = 1235 sequences # 7  

consensusID : consensus_10456#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1235
fasta sequence
                              [AGTAAGCTAGAGATAGAGAGAGAGAGAGAGAGAGATGCCGGAGTACTGCGTCACCGGCGGGACGGGGTTCATCGCGTCGCACCTCATCCGCGCGCTGCTCGCCGCCAGCCACACCGTCCGCGCCACCGTCAGAGACCCAGAGGATGAAGCCAAGGTGGGGTTCCTATGGGAGCTTGATGGCGCGA-CGAGCGGCTGCAGCTGGTGAAGGCCGACCTGATGGTGGAGGGTAGCTTCGACGACGCCGTCCGCGGCGTCAACGGCGTGTTCCACGCGGCGTCCCCCGTCGTGGTGGTCGGCAACAGCAGCAGCAACAACGGCAAGCCGAACGACGACGACGACGAGGAGGAGGTCCAGCAGCGGCTAGTGGAGCCGATCGTGCGCGGCGCGTCGAACGTGCTCCGCTCCTGCGCCAGGGCGTCGCCGCGCCCGCGCCGCGTGGTGTTCACCTCCTCCTGCTCCTGCGTCCGCTACGGCGCCGGCGCGGCGGCGGCGCTGAACGAGTCGCACTGGAGCGACGCCGCCTACTGCGCGGCGCACGGCCTCTGGTACGCCTACGCCAAGACGCTGGCGGAGAGGGAGGCGTG-GCGGCTGGCCAAGG-AGCGCGGCCTCGACATGGTCGCCGTGAACCCGTCCTTCGTCGTGGGCCCCATCCTGTCGCAAGCGCCGACGAGCACGGCGCTGATCGTGCTCGCCCTCCTCCGCGGCGAGCTCCCCAGGTACCCGAACACGACGGTGGGGTTCGTCCACGTGG-ACGACGCGGTGCTGGCCCACGTGGTGGCCATGGAGGACGCCAGGGCGTCGGGGCGGCTCATCTGCTCGTGCCACGTGGCGCACTGGTCGGAGATCGTGGGGTCGCTGAGGGAGAGGTACCCGGGGTACCCGATCCCCGCGGAGTGCGGCAGCCACAAGGGAGACGACAGGGCCCACAAGATGGACACCGCCAAGATCAGGGCTCTCGGCTTCCCGCCATTCCTCTCCGTGCAGCAGATGTTCGACGACTGCATCAAGAGCTTCCAGGACAAGGGCCTCCTTCCTCCTCAC-GCTTGATTCATATGATCCACACAATTAAGCTGCTTGATTAATTAACTAATTAATCTAATATTATTAAGGATCGGAATCAC-GTAGTACCGATCATATATATGTTCATCTCGAAATTAACTGCAAGTGTGAGATCGAGAATACACTAATACAGTGCTAATATATACTGATCAGTCGCCTGGTGAGTTATTAAAAAA]

[+] EMBL AK106870             [AGTAAGCTAGAGATAGAGAGAGAGAGAGAGAGAGATGCCGGAGTACTGCGTCACCGGCGGGACGGGGTTCATCGCGTCGCACCTCATCCGCGCGCTGCTCGCCGCCAGCCACACCGTCCGCGCCACCGTCAGAGACCCAGAGGATGAAGCCGAGGTGGGGTTCCTATGGGAGCTTGATGGCGCGAGCGAGCGGCTGCAGCTGGTGAAGGCCGACCTGATGGTGGAGGGTAGCTTCGACGACGCCGTCCGCGGCGTCGACGGCGTGTTCCACGCGGCGTCCCCCGTCGTGGTGGTCGGCAACAGCAGCAGCAACAACGGCAAGCCGAACGACGACGACGACGAGGAGGAGGTCCAGCAGCGGCTAGTGGAGCCGATCGTGCGCGGCGCGTCGAACGTGCTCCGCTCCTGCGCCAGGGCGTCGCCGCGCCCGCGCCGCGTGGTGTTCACCTCCTCCTGCTCCTGCGTCCGCTACGGCGCCGGCGCGGCGGCGGCGCTGAACGAGTCGCACTGGAGCGACGCCGCCTACTGCGCGGCGCACGGCCTCTGGTACGCCTACGCCAAGACGCTGGCGGAGAGGGAGGCGTG GCGGCTGGCCAAGG AGCGCGGCCTCGACATGGTCGCCGTGAACCCGTCCTTCGTCGTGGGCCCCATCCTGTCGCAAGCGCCGACGAGCACGGCGCTGATCGTGCTCGCCCTCCTCCGCGGCGAGCTCCCCAGGTACCCGAACACGACGGTGGGGTTCGTCCACGTGG ACGACGCGGTGCTGGCCCACGTGGTGGCCATGGAGGACGCCAGGGCGTCGGGGCGGCTCATCTGCTCGTGCCACGTGGCGCACTGGTCGGAGATCGTGGGGTCGCTGAGGGAGAGGTACCCGGGGTACCCGATCCCCGCGGAGTGCGGCAGCCACAAGGGAGACGACAGGGCCCACAAGATGGACACCGCCAAGATCAGGGCTCTCGGCTTCCCGCCATTCCTCTCCGTGCAGCAGATGTTCGACGACTGCATCAAGAGCTTCCAGGACAAGGGCCTCCTTCCTCCTCAC GCTTGATTCATATGATCCACACAATTAAGCTGCTTGATTAATTAACTAATTAATCTAATATTATTAAGGATCGGAATCAC GTAGTACCGATCATATATATGTTCATCTCGAAATTAACTGCAAGTGTGAGATCGAGAATACACTAATA                                              ]
[+] EMBL AU064273             [              AGAGAGAGAGAGAGAGAGAGATGCCGGAGTACTGCGTCACCGGCGGGACGGGGTTCATCGCGTCGCACCTCATCCGCGCGCTGCTCGCCGCCAGCCACACCGTCCGCGCCACCGTCAGAGACCCAGATGATGAAGCCAAGGTGGGGTTCCTATGGGAGCTTGATGGCGCGA CGAGCGGCTGCAGCTGGTGAAGGCCGACCTGATGGTGGAGGGTAGCTTCGACGACGCCGTCCGCGG GTCATCGGCGTGTTCCACGGGGCGTCCCCCGTCGTGGTGGTCGGCAACAGCAGCAGCAACAACGGCAAGNCGAACGACGACGACGACGAGGAGGAGGTCCAGCAGCGGCTAGTGGAGCCGATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU064304             [                                      CGGAGTACTGCGTCACCGGCGGGACGGGGTTCATCGCGTCGCACCTCATCCGCGCGCTGCTCGCCGCCAGCCACACCGTCCGCGCCACCGTCAGAGACCCAGAGGATGAAGCCAAGGTGGGGTTCCTATGGGAGCTTGATGGCGCGA CGAGCGGCTGCAGCTGGTGAAGGCCGACCTGATGGTGGAGGGTAGCTTCGACGACGCCGTCCGCGGC TNAACGGCGTGTTCCACGCGGCGTCCCCCGTCGTGGTGGTCGGCAACAGCAGCAGCAACAACGGCAAGCCGAACGACGACGACGACGAGGAGGAGGTCCAGCAGCGGCTAGTGGAGCCGATCGTGCGCGGCGC TCGAACGTGCTCCGCTCCTGCGCCAGGGCGTCGCCGCGCCCGCGCCGCGTGGTGTTCA CTCCTCCTGCTCCTGCGTCCGCTACGGCGCCGGCGCGGCGGCGGCGCTGAACGAGTCGCACTGGAGCNACGCCGCCTACTGCGCGGCGCACGGNCTCTGGTACGCCTACGCCAAGACGCTGGCGGAGAGGGAGGCGTGNGCGGCTGGCCAAGGAAGCGCGGCCTCGACATGGTCGCCGTGAACCCGTCCTTCGTCGTGGGCCCCATCCTGTCGCAAGCGCCGACGAGCACGGCGCTGATCGTGCTCGCNCTCCTCCGCGGCGAGCTCCCCAGGTACCCGAACACGACGGTGGGG TCCT CACGTGGAACAACCAGGTGCTGGCCCACGTGGTNGCCAT GAGGACG CAAGGNGT AGGGCGGt                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU064313             [                                      CGGAGTACTGCGTCACCGGCGGGACGGGGTTCATCGCGTCGCACCTCATCCGCGCGCTGCTCGCCGCCAGCCACACCGTCCGCGCCACCGTCAGAGACCCAGAGGATGAAGCCAAGGTGGGGTTCCTATGGGAGCTTGATGGCGCGA NGAGCGGCTNCAGCTNGTGAAGGCCGACCTGATGGTGGAGGGTAGCTTCGACGACGNCGTCCGCGG GTGAACGGCGTGTTCCACG GGCGTCCCCCGTCGTGGTGGTCGGCAACAGCAGCAGCAACAACGGCAAGCCGAACGACGACGACGACGAGGAGGAGGTNCAGCAGCGGNTAGTGGAGCCGATCGTNCGCGGCG GTCGAACGTGCTTCGTTCCTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU172746             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCGGCTCATCTGCTCGTGCCACGTGGCGCACTGGTCGGAGATCGTGGGGTCGCTGAGGGAGAGGTACCCGGGGTACCCGATCCCCGCGGAGTGCGGCAGCCACAAGGGAGACGACAGGGCCCACAAGATGGACACCGCCAAGATCAGGGCTCTCGGCTTCCCGCCATTCCTCTCCGTGCAGCAGATGTTCGACGACTGCATCAAGAGCTTCCAGGACAAGGGCCTCCTTCCTCCTCACGGCTTGATTCATATGATCCACACAATTAAGCTGCTTGATTAATTAACTAATTAATCTAATATTATTAAGGATCGGAATCACGGTAGTACCGATCATATATATGTTCATCTCGAAATTAACTGCAAGTGTGAGATCGAGAATACACTAATACAGTGCTAATATATACTGATCAGTCGCCTGGTGAGTTATTAAAAAA]
[+] EMBL AU182677             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CTGCTCGTGCCACGTGGCGCACTGGTCGGAGATCGTGGGGTCGCTGAGGGAGAGGTACCCGGGGTACCCGATCCCCGCGGAGTGCGGCAGCCACAAGGGAGACGACAGGGCCCACAAGATGGACACCGCCAAGATCAGGGCTCTCGGCTTCCCGCCATTCCTCTCCGTGCAGCAGATGTTCGACGACTGCATCAAGAGCTTCCAGGACAAGGGCCTCCTTCCTCCTCACGGCTTGATTCATATGATCCACACAATTAAGCTGCTTGATTAATTAACTAATTAATCTAATATTATTAAGGATCGGAATCAC GTAGTACCGATCATATATATGTTCATCTCGAAATTAACTGCAAGTGTGAGATCGAGAATACACTAATACAGTGCTAATATATACTGATCAGTCGCCTGGTGAGTTATTAAAAAA]
[+] EMBL AU082982             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CGCGGANTNCGGCAGCCACAAGGGAGACGACAGGGCCCACAAGATGGACACCGCCAAGATCAGGGCTCTCGGCTTCCCGCCATTCCTCTCCGTGCAGCAGATGTTCGACGACTGCATCAAGAGCTTCCAGGACAAGGGCCTCCTTCCTCCTCAC GCTTGATTCATATGATCCACACAATTAAGCTGCTTGATTAATTAACTAATTAATCTAATATTATTAAGGATCGGAATCAC GTAGTACCGATCATATATATGTTCATCTCGAAATTAACTGCAAGTGTGAGATCGAGAATACACTAATACAGTGCTAATATATACTGATCAGTCGCCTGGTGAGTTATTAAAAAA]


>consensus_10456#0 AGTAAGCTAGAGATAGAGAGAGAGAGAGAGAGAGATGCCGGAGTACTGCGTCACCGGCGG GACGGGGTTCATCGCGTCGCACCTCATCCGCGCGCTGCTCGCCGCCAGCCACACCGTCCG CGCCACCGTCAGAGACCCAGAGGATGAAGCCAAGGTGGGGTTCCTATGGGAGCTTGATGG CGCGACGAGCGGCTGCAGCTGGTGAAGGCCGACCTGATGGTGGAGGGTAGCTTCGACGAC GCCGTCCGCGGCGTCAACGGCGTGTTCCACGCGGCGTCCCCCGTCGTGGTGGTCGGCAAC AGCAGCAGCAACAACGGCAAGCCGAACGACGACGACGACGAGGAGGAGGTCCAGCAGCGG CTAGTGGAGCCGATCGTGCGCGGCGCGTCGAACGTGCTCCGCTCCTGCGCCAGGGCGTCG CCGCGCCCGCGCCGCGTGGTGTTCACCTCCTCCTGCTCCTGCGTCCGCTACGGCGCCGGC GCGGCGGCGGCGCTGAACGAGTCGCACTGGAGCGACGCCGCCTACTGCGCGGCGCACGGC CTCTGGTACGCCTACGCCAAGACGCTGGCGGAGAGGGAGGCGTGGCGGCTGGCCAAGGAG CGCGGCCTCGACATGGTCGCCGTGAACCCGTCCTTCGTCGTGGGCCCCATCCTGTCGCAA GCGCCGACGAGCACGGCGCTGATCGTGCTCGCCCTCCTCCGCGGCGAGCTCCCCAGGTAC CCGAACACGACGGTGGGGTTCGTCCACGTGGACGACGCGGTGCTGGCCCACGTGGTGGCC ATGGAGGACGCCAGGGCGTCGGGGCGGCTCATCTGCTCGTGCCACGTGGCGCACTGGTCG GAGATCGTGGGGTCGCTGAGGGAGAGGTACCCGGGGTACCCGATCCCCGCGGAGTGCGGC AGCCACAAGGGAGACGACAGGGCCCACAAGATGGACACCGCCAAGATCAGGGCTCTCGGC TTCCCGCCATTCCTCTCCGTGCAGCAGATGTTCGACGACTGCATCAAGAGCTTCCAGGAC AAGGGCCTCCTTCCTCCTCACGCTTGATTCATATGATCCACACAATTAAGCTGCTTGATT AATTAACTAATTAATCTAATATTATTAAGGATCGGAATCACGTAGTACCGATCATATATA TGTTCATCTCGAAATTAACTGCAAGTGTGAGATCGAGAATACACTAATACAGTGCTAATA TATACTGATCAGTCGCCTGGTGAGTTATTAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)