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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10458#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 949 fasta sequence
[GCTTTTTTGGTACGTACTTAACACTGGTTTCACCCTGACAACAGCAATAACCGAGTGGAGCAGTGTGTTATATTCTGTGATCTATACTGCTGTCCCAACTATCGTTGTTGCGATTCTCGACAAGGATCTGAGTAGGAGGACATTGTTGAAATACCCCCAACTCTATGGTGCAGGGCAGCGCGAGGAGAGTTACAACCTAAGGCTGTTCATTTTTGTCATGCTGGACTCCATCTGGCAGAGCCTCGCAGTTTTCTTTATCCCTTACCTTGCATACAGAAAGAGTACAATCGACGG-TGCGAGTCTGGGAGACCTCTGGACACTAGCTGTTGTCATTCTTGTGAACATTCACCTTGCAATCGATGTCATCAGATGGAACTGGATCACGCACGCAGCAATATGGGGCAGTATAGTCGCAACGCTGATTTGTGTCATGGTCATAGACTCCATACCGATATTGCCTGGTTTCTGGGCAATATACAAGGTGATGGGAACTGGACTGTTTTGGGCATTGCTGCTCGCGGTAATTGTGGTTGGAATGATTCCTCATTTTGTCGCTAAGGCCATAAGGGAGCATTTCCTTCCGAATGATATTCAGATTGCGAGAGAAATGGAGAAATCTCAAGATTCTCATGATGTCACTCATCCAGAAATTCAGATGAGTACAGTGGCACGAGCTTAGGTTAGGGGTCACATACTTTTTGTTCATTCAGATAGGATAGCTCTACACCTTTCTTTGGTTCTTTTTACTGTGTGTATACTAGGCAATTCTTTCTGTAGTAAGCACATTTCTTGTTGCTTGCTGCCTTTGTCAGCTATCCAAAGGATAGGTTTCTTTGTACCCATGCTGTGTATCCGCCTGCCAAATTTTGTTGATTTATACCAAAAAAGAAATCATACAGGAGTAAACTGTACATTTTCAGAAAAAAAAAAAAAAAAAAACTCGAGACTA]
[+] EMBL AK059185 [GCTTTTTTGGTACGTACTTAACACTGGTTTCACCCTGACAACAGCAATAACCGAGTGGAGCAGTGTGTTATATTCTGTGATCTATACTGCTGTCCCAACTATCGTTGTTGCGATTCTCGACAAGGATCTGAGTAGGAGGACATTGTTGAAATACCCCCAACTCTATGGTGCAGGGCAGCGCGAGGAGAGTTACAACCTAAGGCTGTTCATTTTTGTCATGCTGGACTCCATCTGGCAGAGCCTCGCAGTTTTCTTTATCCCTTACCTTGCATACAGAAAGAGTACAATCGACGG TGCGAGTCTGGGAGACCTCTGGACACTAGCTGTTGTCATTCTTGTGGACATTCACCTTGCAATCGATGTCATCAGATGGAACTGGATCACGCACGCAGCAATATGGGGCAGTATAGTCGCAACGCTGATTTGTGTCATGGTCATAGACTCCATACCGATATTGCCTGGTTTCTGGGCAATATACAAGGTGATGGGAACTGGACTGTTTTGGGCATTGCTGCTCGCGGTAATTGTGGTTGGAATGATTCCTCATTTTGTCGCTAAGGCCATAAGGGAGCATTTCCTTCCGAATGATATTCAGATTGCGAGAGAAATGGAGAAATCTCAAGATTCTCATGATGTCACTCATCCAGAAATTCAGATGAGTACAGTGGCACGAGCTTAGGTTAGGGGTCACATACTTTTTGTTCATTCAGATAGGATAGCTCTACACCTTTCTTTGGTTCTTTTTACTGTGTGTATACTAGGCAATTCTTTCTGTAGTAAGCACATTTCTTGTTGCTTGCTGCCTTTGTCAGCTATCCAAAGGATAGGTTTCTTTGTACCCATGCTGTGTATCCGCCTGCCAAATTTTGTTGATTTAT ]
[-] EMBL CB678412 [ ATACCCCCAACTCTATGGTGCAGGGCAGCGCGAGGAGAGTTACAACCTAAGGCTGTTCATTTTTGTCATGCTGGACTCCATCTGGCAGAGCCTCGCAGTTTTCTTTATCCCTTACCTTGCATACAGAAAGAGTACAATCGACGG TGCGAGTCTGGGAGACCTCTGGACACTAGCTGTTGTCATTCTTGTGAACATTCACCTTGCAATCGATGTCATCAGATGGAACTGGATCACGCACGCAGCAATATGGGGCAGTATAGTCGCAACGCTGATTTGTGTCATGGTCATAGACTCCATACCGATATTGCCTGGTTTCTGGGCAATATACAAGGTGATGGGAACTGGACTGTTTTGGGCATTGCTGCTCGCGGTAATTGTGGTTGGAATGATTCCTCATTTTGTCGCTAAGGCCATAAGGGAGCATTTCCTTCCGAATGATATTCAGATTGCGAGAGAAATGGAGAAATCTCAAGATTCTCATGATGTCACTCATCCAGAAATTCAGATGAGTACAGTGGCACGAGCTTAGGTTAGGGGTCACATACTTTTTGTTCATTCAGATAGGATAGCTCTACACCTTTCTTTGGTTCTTTTTACTGTGTGTATACTAGGCAATTCTTTCTGTAGTAAGCACATTTCTTGTTGCTTGCTGCCTTTGTCAGCTATCCAAAGGATAGGTTTCTTTGTACCCATGCTGTGTATCCGCCTGCCAAATTTTGTTGATTTATACCAAAAAGGAAATCATACAGGAGTAAACTGTCCATTTTCAG ]
[-] EMBL CB629684 [ CCCCCAACTCTATGGTGCAGGGCAGCGCGAGGAGAGTTACAACCTAAGGCTGTTCATTTTTGTCATGCTGGACTCCATCTGGCAGAGCCTCGCAGTTTTCTTTATCCCTTACCTTGCATACAGAAAGAGTACAATCGACGG TGCGAGTCTGGGAGACCTCTGGACACTAGCTGTTGTCATTCTTGTGAACATTCACCTTGCAATGGATGTCATCAGATGGAACTGGATCACGCACGCAGCAATATGGGGCAGTATAGTCGCAACGCTGATTTGTGTCATGGTCATAGACTCCATACCGATATTGCCTGGTTTCTGGGCAATATACAAGGTGATGGGAACTGGACTGTTTTGGGCATTGCTGCTCGCGGTAATTGTGGTTGGAATGATTCCTCATTTTGTCGCTAAGGCCATAAGGGAGCATTTCCTTCCGAATGATATTCAGATTGCGAGAGAAATGGAGAAATCTCAAGATTCTCATGATGTCACTCATCCAGAAATTCAGATGAGTACAGTGGCACGAGCTTAGGTTAGGGGTCACATACTTTTTGTTCATTCAGATAGGATAGCTCTACACCTTTCTTTGGTTCTTTTTACTGTGTGTATACTAGGCAATTCTTTCTGTAGTAAGCACATTTCTTGCTGCTTGCTGCCTTTGTCAGCTATCCAAAGGATAGGTTTCTTTGTACCCATGCTGTGTATCCGCCTGCCAAATTTTGTTGATTTATACCAAAAAAGAAATCAGGCAGGAGTAAACTGTACATTTTCAGAAAAAAAAATAAAAA ]
[-] EMBL CB649807 [ AGCGCGAGGAGAGTTACAACCTAAGGCTGTTCATTTTTGTCATGCTGGACTCCATCTGGCAGAGCCTCGCAGTTTTCTTTATCCCTTACCTTGCATACAGAAAGAGTACAATCGACGG TGCGAGTCTGGGAGACCTCTGGACACTAGCTGTTGTCATTCTTGTGAACATTCACCTTGCAATCGATGTCATCAGATGGAACTGGATCACGCACGCAGCAATATGGGGCAGTATAGTCGCAACGCTGATTTGTGTCATGGTCATAGACTCCATACCGATATTGCCTGGTTTCTGGGCAATATACAAGGTGATGGGAACTGGACTGTTTTGGGCATTGCTGCTCGCGGTAATTGTGGTTGGAATGATTCCTCATTTTGTCGCTAAGGCCATAAGGGAGCATTTCCTTCCGAATGATATTCAGATTGCGAGAGAAATGGAGAAATCTCAAGATTCTCATGATGTCACTCATCCAGAAATTCAGATGAGTACAGTGGCACGAGCTTAGGTTAGGGGTCACATACTTTTTGTTCATTCAGATAGGATAGCTCTACACCTTTCTTTGGTTCTTTTTACTGTGTGTATACTAGGCAATTCTTTCTGTAGTAAGCACATTTCTTGTTGCTTGCTGCCTTTGTCAGCTATCCAAAGGATAGGTTTCTTTGTACCCATGCTGTGTATCCGCCTGCCAAATTTTGTTGATTTATACCAAAAAAGAAATCGTACAGGAGTAAACTGTA ]
[-] EMBL CA763213 [ ctacCCTCGCATACAGAAAGAGTACAATTCTCGGTTCCGAGTCTGGGAGACCCCTGGACACTACCTGTTGTCATTCTTGTGAACATTCCCCTTGCAATGGATGTCATCAGATGGAACTGGATCACGCACGCAGCAATATGGGGCAGTATAGTCGCAACGCTGATTTGTGTCATGGTCATAGACTCCATACCGATATTGCCTGGTTTCTGGGCAATATACAAGGTGATGGGAACTGGACTGTTTTGGGCATTGCTGCTCGCGGTAATTGTGGTTGGAATGATTCCTCATTTTGTCGCTAAGGCCATAAGGGAGCATTTCCTTCCGAATGATATTCAGATTGCGAGAGAAATGGAGAAATCTCAAGATTCTCATGATGTCACTCATCCAGAAATTCAGATGAGTACAGTGGCACGAGCTCAGGTTAGGGGTCACATACTTTTTGTTCATTCAGATAGGATAGCTCTACACCTTTCTTTGGTTCTTTTTACTGTGTGCATACTAGGCAATTCTTTCTGTAGTAAGCACATTTCTTGCTGCTTGCTGCCTTTGTCAGCTATCCAAAGGATAGGTTTCTTTGTACCCATGCTGTGTATCCGCCTGCCAAATTTTGTTGATTTATACCAAAAAAGAAATCATACAGGAGTAAACTGTACATTTTCAGAAAAAAAAAAAAta ]
[-] EMBL CF325275 [ CTGTGTGTATACTAGGCAATTCTTTCTGTAGTAAGCACATTTCTTGTTGCTTGCTGCCTTTGTCAGCTATCCAAAGGATAGGTTTCTTTGTACCCATGCTGTGTATCCGCCTGCCAAATTTTGTTGATTTATACCAAAAAAGAAATCATACAGGAGTAAACTGTACATTTTCAGAAAAAAAAAAAAAAAAAAACTCGAGACTA]
consensusID : consensus_10458#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence
[GAGACAAGGGATAGGTGAGCCAGAGGACGAGACAAGGGGGTGAACATTCACCTTGCAATGGATGTCATCAGATGGAACTGGATCACGCACGCAGCAATATGGGGCAGTATAGTCGCAACGCTGATTTGTGTCATGGTCATAGACTCCATACCGATATTGCCTGGTTTCTGGGCAATATACAAGGTGATGGGAACTGGACTGTTTTGGGCATTGCTGCTCGCGGTAATTGTGGTTGGAATGATTCCTCATTTTGTCGCTAAGGCCATAAGGGAGCATTTCCTTCCGAATGATATTCAGATTGCGAGAGAAATGGAGAAATCTCAAGATTCTCATGATGTCACTCATCCAGAAATTTAGATGAGTACAGTGGCACGAGCTTAGGTTAGGGGTCACATACTTTTTGTTCATTCAGATAGGATAGCTCTACACCTTTCTTTGGTTCTTTTTACTGTGTGTATACTAGGCAATTCTTTCTGTAGTAAGCACATTTCTTGCTGCTTGCTGCCTTTGTCAGCTATCCAAAGGATAGGTTTCTTTGTACCCATGCTGTGTATCCGCCTGCCAAATTTTGTTGATTTATACCAAAAAAGAAATCATACAGGAGTAAACTGTACATTTTCAGAAAAAAAAAAAAAA]
[-] EMBL CA763214 [GAGACAAGGGATAGGTGAGCCAGAGGACGAGACAAGGGGGTGAACATTCACCTTGCAATGGATGTCATCAGATGGAACTGGATCACGCACGCAGCAATATGGGGCAGTATAGTCGCAACGCTGATTTGTGTCATGGTCATAGACTCCATACCGATATTGCCTGGTTTCTGGGCAATATACAAGGTGATGGGAACTGGACTGTTTTGGGCATTGCTGCTCGCGGTAATTGTGGTTGGAATGATTCCTCATTTTGTCGCTAAGGCCATAAGGGAGCATTTCCTTCCGAATGATATTCAGATTGCGAGAGAAATGGAGAAATCTCAAGATTCTCATGATGTCACTCATCCAGAAATTTAGATGAGTACAGTGGCACGAGCTTAGGTTAGGGGTCACATACTTTTTGTTCATTCAGATAGGATAGCTCTACACCTTTCTTTGGTTCTTTTTACTGTGTGTATACTAGGCAATTCTTTCTGTAGTAAGCACATTTCTTGCTGCTTGCTGCCTTTGTCAGCTATCCAAAGGATAGGTTTCTTTGTACCCATGCTGTGTATCCGCCTGCCAAATTTTGTTGATTTATACCAAAAAAGAAATCATACAGGAGTAAACTGTACATTTTCAGAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10458#0 GCTTTTTTGGTACGTACTTAACACTGGTTTCACCCTGACAACAGCAATAACCGAGTGGAG 60
consensus_10458#1 ------------------------------------------------------------
consensus_10458#0 CAGTGTGTTATATTCTGTGATCTATACTGCTGTCCCAACTATCGTTGTTGCGATTCTCGA 120
consensus_10458#1 ------------------------------------------------------------
consensus_10458#0 CAAGGATCTGAGTAGGAGGACATTGTTGAAATACCCCCAACTCTATGGTGCAGGGCAGCG 180
consensus_10458#1 ------------------------------------------------------------
consensus_10458#0 CGAGGAGAGTTACAACCTAAGGCTGTTCATTTTTGTCATGCTGGACTCCATCTGGCAGAG 240
consensus_10458#1 ------------------------------------------------------------
consensus_10458#0 CCTCGCAGTTTTCTTTATCCCTTACCTTGCATACAGAAAGAGTACAATCGACGGTGCGAG 300
consensus_10458#1 ---------------------------------------------------------GAG 3
***
consensus_10458#0 TCTGGGAGACCTCTGGACACTAGCTGTTGTCATTCTTGTGAACATTCACCTTGCAATCGA 360
consensus_10458#1 AC-AAGGGATAGGTGAGCCAGAGGACGAGACAAGGGGGTGAACATTCACCTTGCAATGGA 62
* * ** ** * ** * ** ******************** **
consensus_10458#0 TGTCATCAGATGGAACTGGATCACGCACGCAGCAATATGGGGCAGTATAGTCGCAACGCT 420
consensus_10458#1 TGTCATCAGATGGAACTGGATCACGCACGCAGCAATATGGGGCAGTATAGTCGCAACGCT 122
************************************************************
consensus_10458#0 GATTTGTGTCATGGTCATAGACTCCATACCGATATTGCCTGGTTTCTGGGCAATATACAA 480
consensus_10458#1 GATTTGTGTCATGGTCATAGACTCCATACCGATATTGCCTGGTTTCTGGGCAATATACAA 182
************************************************************
consensus_10458#0 GGTGATGGGAACTGGACTGTTTTGGGCATTGCTGCTCGCGGTAATTGTGGTTGGAATGAT 540
consensus_10458#1 GGTGATGGGAACTGGACTGTTTTGGGCATTGCTGCTCGCGGTAATTGTGGTTGGAATGAT 242
************************************************************
consensus_10458#0 TCCTCATTTTGTCGCTAAGGCCATAAGGGAGCATTTCCTTCCGAATGATATTCAGATTGC 600
consensus_10458#1 TCCTCATTTTGTCGCTAAGGCCATAAGGGAGCATTTCCTTCCGAATGATATTCAGATTGC 302
************************************************************
consensus_10458#0 GAGAGAAATGGAGAAATCTCAAGATTCTCATGATGTCACTCATCCAGAAATTCAGATGAG 660
consensus_10458#1 GAGAGAAATGGAGAAATCTCAAGATTCTCATGATGTCACTCATCCAGAAATTTAGATGAG 362
**************************************************** *******
consensus_10458#0 TACAGTGGCACGAGCTTAGGTTAGGGGTCACATACTTTTTGTTCATTCAGATAGGATAGC 720
consensus_10458#1 TACAGTGGCACGAGCTTAGGTTAGGGGTCACATACTTTTTGTTCATTCAGATAGGATAGC 422
************************************************************
consensus_10458#0 TCTACACCTTTCTTTGGTTCTTTTTACTGTGTGTATACTAGGCAATTCTTTCTGTAGTAA 780
consensus_10458#1 TCTACACCTTTCTTTGGTTCTTTTTACTGTGTGTATACTAGGCAATTCTTTCTGTAGTAA 482
************************************************************
consensus_10458#0 GCACATTTCTTGTTGCTTGCTGCCTTTGTCAGCTATCCAAAGGATAGGTTTCTTTGTACC 840
consensus_10458#1 GCACATTTCTTGCTGCTTGCTGCCTTTGTCAGCTATCCAAAGGATAGGTTTCTTTGTACC 542
************ ***********************************************
consensus_10458#0 CATGCTGTGTATCCGCCTGCCAAATTTTGTTGATTTATACCAAAAAAGAAATCATACAGG 900
consensus_10458#1 CATGCTGTGTATCCGCCTGCCAAATTTTGTTGATTTATACCAAAAAAGAAATCATACAGG 602
************************************************************
consensus_10458#0 AGTAAACTGTACATTTTCAGAAAAAAAAAAAAAAAAAAACTCGAGACTA 949
consensus_10458#1 AGTAAACTGTACATTTTCAGAAAAAAAAAAAAAA--------------- 636
**********************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||