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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10469#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2946 fasta sequence
[TGGGGGAGGCGCCGCGCGAGGGCAACTCCTCCGCGGTTCGCGCTGGCGGCATCTACCAGAGACGGCGACCCGGCCCCGCCGACGTTCGAGCGGCTGCGGGAGCAGCTCCTACAGCTCCACGCAGAAGCCGACCTCACCCAATCCAAAGCAAATAGCACGAGGGTAAGGCTTGTGCGGTTGACTGAGGCTGCTGAGAATCTTAAGAAAAGAGCTGCGGTCAGCATCCGAATGGGCAAAGAGAATGAGGCAGTGGATTTACTTGTGCAAAAGAAGAAGCTGACCAAAGCTCTTGAAAGCATAAAACAGCGCATTGAGGTGCTTGATAAGCTTTCCATGAAAATCAGTGAGGCAATTTCAGTGAAGCAGAACATGTTAATTGAACATGCATTGCATCCAGGGATGTCTAATGGCAAAGAATCCAATGACAACATAAGAGTTTTCTCTAGTAAAGTTGGTGATGAGGCTGATGAGACTACTAGCTCTCCTGCGAAATCATCTGAAAAGGCATTTGATCTGCAACATGTGGTGCATTCAGGCATGACTGGCCAGTTGGAGCAAAGTGAACTTCAGACGTCCGATAGCTTCTCATTTTCCAGTGATCTTGAATCACCAAACAGCATAACTAACCATTCTTCTTATGATGCTTTTCTAGACCATATTGGTTTTCAGCTGGATTCATTAGAATGTGAAATTGAACAATATATCGTTTCCCAACTAGCAGAACAGGTGGACATTCAGAAGCCAATAAATGCCAAGTGGCAAAAATTGTCTGACGTATTGAAGCTTGTAACTGAAACTAGAGAAAGGATTGCAAAGATTGTGGATAATACAGTAAAGGAGGCTGGATCTGAGGACTGAGGTCATAGCGAAGTATATAAAGCAATGTATTGATGACATCAAACCCTGTTTCTTTTATTTGTAACATGGTATATGGTTTCATGGAAAATTTGTGCAATACCTTACAGAAGCATCATGGTCTAGGTCTGCAGCCAGTGGCTCATTGTCCATTTTCTTCTGGAGGATCCATTTTGTAGTTTTTCGGTTCCTTCTATCCATCCTTAGATCTGTTAGGAACAGGAAGGCCTTGGCAACTGCCAAAGTGCTCACTAACAAACACACTGTTGCAGAGAGCCTTCCTGCTGGTGTTGAGAAGCCATAATCCCCATATCCAACTGTTGTCACAGAAATGACTGATAAATAGAAGCTATCAATCCAATTTAGACCCTCCACCTCATGCACTATGATTGTACAAATTGAGATGGTGCCTACAACAACCCCTAACGCAAGTAGTACTTTCATCCTCCCTCTTGATCTTTTCTTTTCAGCATCAATCATATAGGTGTCAAATACCCTATTAAGCTTGTTATCATCCATTGTGCTAAGTAAGACTGTTCTCTGCTTGTCAAGTACATTTGTCAACAGCTCATTTAGCACAATGTCAACAAAGCGAACACCGATTAGTAGAAACAAGCATGTGAACACCTTTGTGAAGGTAGTGCAAGGGACTATGTCACCGTATCCTATGGTGCACAAGCTTATGATGGTGAAGTAAAGGCCATCAACTAACTTCAGTGTGGACCTCCCCTTGAAGCCTTCAACATTTGTGATGTATACAAGGACTCCTATTGAGATGTACAAGATGACGCTAACGATAGCCTGCCTTGCAAATGATGGTACGTGTTGTGCAGCATGGCTTTGCTCATTGAACTCATCTGCACAGGGAGTTTATTTGATTGATGTGAACATAGAAGGAGAAGAATGCACCCGCTGGAAATTTTGTGCGGTAACTATATTGCCATTTCCGCTAGTATGTAACGGATGATTGGGAGTATTGGGGTTACCTTTGCTATTTGTACTTGGGTGAAAGGAAGTCACGAACCTGTTTGGGACATCGGAGGATTTTCTTCTGTCTTGTCTTGAAGAGTATACTTGATCACGGTGGACTACAGGCAGCAGGTGCTCTTCCATGGTAGACATGTTAGATCTTGGATTCATCAGCTCACAGCTTGCAGTTCTCAGGACTGTACTCATCAATTTATATCCATGGCAGTTCTGCTGTGATCTCGGTGATGGAATTGGTAACCACGAGATGGTCGTCAATCAAGGATGTACACTTACCTGCTCTTTCTGGGTTGAAAGGAGTGTATCAAATCTCAAAACATATCTTTCTTATTTATTGCAACATTTATATCACGTAGTTTCCAGTATATTGCATAGTAGCTGATACAAGAGGCAATTGATGAAAGGGAAGGAAAAGACGGATATCAAGATTAACAATGGCTTGTTAGCATTCTGATTTTGCAAGTTGGCCTTCCCTTCTCTGGGATGATCCATTGACATAAAGGCAATGCCATATTCTCCAGGACTCTGTTCTACAACAGGGGTTGCCTTTTTCTGGATGGGAACATGTCAGTTTCTTGCGGCTATGAGATCTTATTGCCGGTGAGGGAGGTAAATGCTGCGCCGACGGAAAGGTTCTCAAGCTGGGGATCCCTGTTTCCGTGTCATCTATGTATCTTCGAGCTGTCTTTTTCTGACGGATCTTGACTGGAGTATCTTGTCCCTGATGATCAGTCTCTGCGTGACACTCTGAAGAAAAGGCTGTGCAGATGAAAACTGTAAGACCTTGCCTAGAGGCTAGAATATAACCGAGCACTGGAGTATTTTAGAGAACCGGGCAAGCAAGCATTCTTCAGCTTTCCAGCTTCCTGGCATAAATGTTGATGAATTTGTCGCCATGAATATCTATTAGCCCCTAACAAACTTATCTAGCTTGATCATCTATCTCGTTGATTAAGACACAGTTTCCACCTGGGGACCGTGTGATCGACGGAGTCCTGAAATTTGTTACTGAAGCAGTCAAGCAGAGGATGTAATACTGTGCTGTAACCAGATCTTCACGTTGTTCGCTAGACCGGCAAACCGGCATTACTACATATGGTCTGA]
[+] EMBL AK066735 [TGGGGGAGGCGCCGCGCGAGGGCAACTCCTCCGCGGTTCGCGCTGGCGGCATCTACCAGAGACGGCGACCCGGCCCCGCCGACGTTCGAGCGGCTGCGGGAGCAGCTCCTACAGCTCCACGCAGAAGCCGACCTCACCCAATCCAAAGCAAATAGCACGAGGGTAAGGCTTGTGCGGTTGACTGAGGCTGCTGAGAATCTTAAGAAAAGAGCTGCGGTCAGCATCCGAATGGGCAAAGAGAATGAGGCAGTGGATTTACTTGTGCAAAAGAAGAAGCTGACCAAAGCTCTTGAAAGCATAAAACAGCGCATTGAGGTGCTTGATAAGCTTTCCATGAAAATCAGTGAGGCAATTTCAGTGAAGCAGAACATGTTAATTGAACATGCATTGCATCCAGGGATGTCTAATGGCAAAGAATCCAATGACAACATAAGAGTTTTCTCTAGTAAAGTTGGTGATGAGGCTGATGAGACTACTAGCTCTCCTGCGAAATCATCTGAAAAGGCATTTGATCTGCAACATGTGGTGCATTCAGGCATGACTGGCCAGTTGGAGCAAAGTGAACTTCAGACGTCCGATAGCTTCTCATTTTCCAGTGATCTTGAATCACCAAACAGCATAACTAACCATTCTTCTTATGATGCTTTTCTAGACCATATTGGTTTTCAGCTGGATTCATTAGAATGTGAAATTGAACAATATATCGTTTCCCAACTAGCAGAACAGGTGGACATTCAGAAGCCAATAAATGCCAAGTGGCAAAAATTGTCTGACGTATTGAAGCTTGTAACTGAAACTAGAGAAAGGATTGCAAAGATTGTGGATAATACAGTAAAGGAGGCTGGATCTGAGGACTGAGGTCATAGCGAAGTATATAAAGCAATGTATTGATGACATCAAACCCTGTTTCTTTTATTTGTAACATGGTATATGGTTTCATGGAAAATTTGTGCAATACCTTACAGAAGCATCATGGTCTAGGTCTGCAGCCAGTGGCTCATTGTCCATTTTCTTCTGGAGGATCCATTTTGTAGTTTTTCGGTTCCTTCTATCCATCCTTAGATCTGTTAGGAACAGGAAGGCCTTGGCAACTGCCAAAGTGCTCACTAACAAACACACTGTTGCAGAGAGCCTTCCTGCTGGTGTTGAGAAGCCATAATCCCCATATCCAACTGTTGTCACAGAAATGACTGATAAATAGAAGCTATCAATCCAATTTAGACCCTCCACCTCATGCACTATGATTGTACAAATTGAGATGGTGCCTACAACAACCCCTAACGCAAGTAGTACTTTCATCCTCCCTCTTGATCTTTTCTTTTCAGCATCAATCATATAGGTGTCAAATACCCTATTAAGCTTGTTATCATCCATTGTGCTAAGTAAGACTGTTCTCTGCTTGTCAAGTACATTTGTCAACAGCTCATTTAGCACAATGTCAACAAAGCGAACACCGATTAGTAGAAACAAGCATGTGAACACCTTTGTGAAGGTAGTGCAAGGGACTATGTCACCGTATCCTATGGTGCACAAGCTTATGATGGTGAAGTAAAGGCCATCAACTAACTTCAGTGTGGACCTCCCCTTGAAGCCTTCAACATTTGTGATGTATACAAGGACTCCTATTGAGATGTACAAGATGACGCTAACGATAGCCTGCCTTGCAAATGATGGTACGTGTTGTGCAGCATGGCTTTGCTCATTGAACTCATCTGCACAGGGAGTTTATTTGATTGATGTGAACATAGAAGGAGAAGAATGCACCCGCTGGAAATTTTGTGCGGTAACTATATTGCCATTTCCGCTAGTATGTAACGGATGATTGGGAGTATTGGGGTTACCTTTGCTATTTGTACTTGGGTGAAAGGAAGTCACGAACCTGTTTGGGACATCGGAGGATTTTCTTCTGTCTTGTCTTGAAGAGTATACTTGATCACGGTGGACTACAGGCAGCAGGTGCTCTTCCATGGTAGACATGTTAGATCTTGGATTCATCAGCTCACAGCTTGCAGTTCTCAGGACTGTACTCATCAATTTATATCCATGGCAGTTCTGCTGTGATCTCGGTGATGGAATTGGTAACCACGAGATGGTCGTCAATCAAGGATGTACACTTACCTGCTCTTTCTGGGTTGAAAGGAGTGTATCAAATCTCAAAACATATCTTTCTTATTTATTGCAACATTTATATCACGTAGTTTCCAGTATATTGCATAGTAGCTGATACAAGAGGCAATTGATGAAAGGGAAGGAAAAGACGGATATCAAGATTAACAATGGCTTGTTAGCATTCTGATTTTGCAAGTTGGCCTTCCCTTCTCTGGGATGATCCATTGACATAAAGGCAATGCCATATTCTCCAGGACTCTGTTCTACAACAGGGGTTGCCTTTTTCTGGATGGGAACATGTCAGTTTCTTGCGGCTATGAGATCTTATTGCCGGTGAGGGAGGTAAATGCTGCGCCGACGGAAAGGTTCTCAAGCTGGGGATCCCTGTTTCCGTGTCATCTATGTATCTTCGAGCTGTCTTTTTCTGACGGATCTTGACTGGAGTATCTTGTCCCTGATGATCAGTCTCTGCGTGACACTCTGAAGAAAAGGCTGTGCAGATGAAAACTGTAAGACCTTGCCTAGAGGCTAGAATATAACCGAGCACTGGAGTATTTTAGAGAACCGGGCAAGCAAGCATTCTTCAGCTTTCCAGCTTCCTGGCATAAATGTTGATGAATTTGTCGCCATGAATATCTATTAGCCCCTAACAAACTTATCTAGCTTGATCATCTATCTCGTTGATTAAGACACAGTTTCCACCTGGGGACCGTGTGATCGACGGAGTCCTGAAATTTGTTACTGAAGCAGTCAAGCAGAGGATGTAATACTGTGCTGTAACCAGATCTTCACGTTGTTCGCTAGACCGGCAAACCGGCATTACTACATATGGTCTGA]
[+] EMBL CF197150 [ GAGCTGCGGTCAGCATCCGAATGGGCAAAGAGAATGAGGCAGTGGATTTACTTGTGCAAAAGAAGAAGCTGACCAAAGCTCTTGAAAGCATAAAACAGCGCATTGAGGTGCTTGATAAGCTTTCCATGAAAATCAGTGAGGCAATTTCAGTGAAGCAGAACATGTTAATTGAACATGCATTGCATCCAGGGATGTCTAATGGCAAAGAATCCAATGACAACATAAGAGTTTTCTCTAGTAAAGTTGGTGATGAGGCTGATGAGACTACTAGCTCTCCTGCGAAATCATCTGAAAAGGCATTTGATCTGCAACATGTGGTGCATTCAGGCATGACTGGCCAGTTGGAGCAAAGTGAACTTCAGACGTCCGATAGCTTCACATTTTCCAGTGATCTTGAATCACCAAACAGCATAACTAACCATTCTTCTTATGATGCTTTTCTAGACCATATTGGTTTTCAGCTGGATTCATTAGAATGTGAAATTGAACAATATATCAGTTCCCAACTAGCAGNNCANNTGGACATTCAGNNNCCAATAAATGCCAAGTGGCAAAAATTGTCTGnnnna ]
[+] EMBL CF340065 [ GCTCTTTCTGGGTTGAAAGGAGTGTATCAAATCTCAAAACATATCTTTCTTATTTATTGCAACATTTATATCACGTAGTTTCCAGTATATTGCATAGTAGCTGATACAAGAGGCAATTGATGAAAGGGAAGGAAAAGACGGATATCAAGATTAACAATGGCTTGTTAGCATTCTGATTTTGCAAGTTGGCCTTCCCTTCTCTGGGATGATCCATTGACATAAAGGCAATGCCATATTCTCCAGGACTCTGTTCTACAACAGGGGTTGCCTTTTTCTGGATGGGAACATGTCAGTTTCTTGCGGCTATGAGATCTTATTGCCGGTGAGGGAGGTAAATGCTGCGCCGACGGAAAGGTTCTCAAGCTGGGGATCCCTGTTTCCGTGTCATCTATGTATCTTCGAGCTGTCTTTTTCTGACGGATCTTGACTGGAGTATCTTGTCCCTGATGATCAGTCTCTGCGTGACACTCTGAAGAAAAGGCTGTGCAGATGAAAACTGTAAGACCTTGCCTAGAGGCTAGAATATAACCGAGCACTGGAGTATTTTAGAGAACCGGGCAAGCAAGCATTCTTCAGCCTTCCAGCTTCCTGGCATAAATGTTGATGAATTTGTCGCCA ]
[+] EMBL CF339071 [ GCTCTTTCTGGGTTGAAAGGAGTGTATCAAATCTCAAAACATATCTTTCTTATTTATTGCAACATTTATATCACGTAGTTTCCAGTATATTGCATAGTAGCTGATACAAGAGGCAATTGATGAAAGGGAAGGAAAAGACGGATATCAAGATTAACAATGGCTTGTTAGCATTCTGATTTTGCAAGTTGGCCTTCCCTTCTCTGGGATGATCCATTGACATAAAGGCAATGCCATATTCTCCAGGACTCTGTTCTACAACAGGGGTTGCCTTTTTCTGGATGGGAACATGTCAGTTTCTTGCGGCTATGAGATCTTATTGCCGGTGAGGGAGGTAAATGCTGCGCCGACGGAAAGGTTCTCAAGCTGGGGATCCCTGTTTCCGTGTCATCTATGTATCTTCGAGCTGTCTTTTTCTGACGGATCTTGACTGGAGTATCTTGTCCCTGATGATCAGTCTCTGCGT ]
consensusID : consensus_10469#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1480 fasta sequence
[TGGGGGAGGCGCCGCGCGAGGGCAACTCCTCCGCGGTTCGCGCTGGCGGCATCTACCAGAGACGGCGACCCGGCCCCGCCGACGTTCGAGCGGCTGCGGGAGCAGCTCCTACAGCTCCACGCAGAAGCCGACCTCACCCAATCCAAAGCAAATAGCACGAGGGTAAGGCTTGTGCGGTTGACTGAGGCTGCTGAGAATCTTAAGAAAAGAGCTGCGGTCAGCATCCGAATGGGCAAAGAGAATGAGGCAGTGGATTTACTTGTGCAAAAGAAGAAGCTGACCAAAGCTCTTGAAAGCATAAAACAGCGCATTGAGGTGCTTGATAAGCTTTCCATGAAAATCAGTGAGGGATGTCTAATGGCAAAGAATCCAATGACAACATAAGAGTTTTCTCTAGTAAAGTTGGTGATGAGGCTGATGAGACTACTAGCTCTCCTGCGAAATCATCTGAAAAGGCATTTGATCTGCAACATGTGGTGCATTCAGGCATGACTGGCCAGTTGGAGCAAAGTGAACTTCAGACGTCCGATAGCTTCTCATTTTCCAGTGATCTTGAATCACCAAACAGCATAACTAACCATTCTTCTTATGATGCTTTTCTAGACCATATTGGTTTTCAGCTGGATTCATTAGAATGTGAAATTGAACAATATATCAGTTCCCAACTAGCAGAACAGGTGGACATTCAGAAGCCAATAAATGCCAAGTGGCAAAAATTGTCTGACGTATTGAAGCTTGTAACTGAAACTAGAGAAAGGATTGCAAAGATTGTGGATAATACAGTAAAGGAGGCTGGATCTGAGGACTGAGGTCATAGCGAAGTATATAAAGCAATGTATTGATGACATCAAACCCTGTTTCTTTTATTTGTAACATGGTAAGTTGTGTCATTGTTTTGATTTCACTGCACATAGCTTAGATTATCACTATTTTCTTGTATGAGACGATCTTATGATTCTTTAATATCAATTGTTTATTGTCTACCTGCCTCTTTGCTTGTATACCTAAATATCAATACAATCTAGAAACAAATATGCAAGAAATCCTGAAGCTGAAGTTATGATTGAATTCATTCAACCAGCACATGGACTTTTACTTCTAACCAAGAAACAGAGTACTTCGAATAGCGAGGTTATTTAATAGGTTACCCACACATGTGCATGCTTTAGTGTCTGTTTAACAAAGTATAAGACAGCAACTATCACTATGATATCAGGTATTCATATACATTCTGTAAATCATACTTATAATTTTCCAATGATGTCCGCAAGAGTGATCTTTCCACACTTTGCAAGGCCAAGCTGATCAAACTGGTCTGAGATCATTGCAATGTCTTTGTCATCGATCTTTCCTATCTCTTTGAGTTTGTAGATCAGAAAGTCCGATTTGCTGTGGCATAAAAAGAAAAAGACCACAAAGTTAGGACTGGATAACTGCCTTGAATACAAAAGGTCACACTGTAATGCAACATTATAAATTA]
[+] EMBL AK110917 [TGGGGGAGGCGCCGCGCGAGGGCAACTCCTCCGCGGTTCGCGCTGGCGGCATCTACCAGAGACGGCGACCCGGCCCCGCCGACGTTCGAGCGGCTGCGGGAGCAGCTCCTACAGCTCCACGCAGAAGCCGACCTCACCCAATCCAAAGCAAATAGCACGAGGGTAAGGCTTGTGCGGTTGACTGAGGCTGCTGAGAATCTTAAGAAAAGAGCTGCGGTCAGCATCCGAATGGGCAAAGAGAATGAGGCAGTGGATTTACTTGTGCAAAAGAAGAAGCTGACCAAAGCTCTTGAAAGCATAAAACAGCGCATTGAGGTGCTTGATAAGCTTTCCATGAAAATCAGTGAGGGATGTCTAATGGCAAAGAATCCAATGACAACATAAGAGTTTTCTCTAGTAAAGTTGGTGATGAGGCTGATGAGACTACTAGCTCTCCTGCGAAATCATCTGAAAAGGCATTTGATCTGCAACATGTGGTGCATTCAGGCATGACTGGCCAGTTGGAGCAAAGTGAACTTCAGACGTCCGATAGCTTCTCATTTTCCAGTGATCTTGAATCACCAAACAGCATAACTAACCATTCTTCTTATGATGCTTTTCTAGACCATATTGGTTTTCAGCTGGATTCATTAGAATGTGAAATTGAACAATATATCAGTTCCCAACTAGCAGAACAGGTGGACATTCAGAAGCCAATAAATGCCAAGTGGCAAAAATTGTCTGACGTATTGAAGCTTGTAACTGAAACTAGAGAAAGGATTGCAAAGATTGTGGATAATACAGTAAAGGAGGCTGGATCTGAGGACTGAGGTCATAGCGAAGTATATAAAGCAATGTATTGATGACATCAAACCCTGTTTCTTTTATTTGTAACATGGTAAGTTGTGTCATTGTTTTGATTTCACTGCACATAGCTTAGATTATCACTATTTTCTTGTATGAGACGATCTTATGATTCTTTAATATCAATTGTTTATTGTCTACCTGCCTCTTTGCTTGTATACCTAAATATCAATACAATCTAGAAACAAATATGCAAGAAATCCTGAAGCTGAAGTTATGATTGAATTCATTCAACCAGCACATGGACTTTTACTTCTAACCAAGAAACAGAGTACTTCGAATAGCGAGGTTATTTAATAGGTTACCCACACATGTGCATGCTTTAGTGTCTGTTTAACAAAGTATAAGACAGCAACTATCACTATGATATCAGGTATTCATATACATTCTGTAAATCATACTTATAATTTTCCAATGATGTCCGCAAGAGTGATCTTTCCACACTTTGCAAGGCCAAGCTGATCAAACTGGTCTGAGATCATTGCAATGTCTTTGTCATCGATCTTTCCTATCTCTTTGAGTTTGTAGATCAGAAAGTCCGATTTGCTGTGGCATAAAAAGAAAAAGACCACAAAGTTAGGACTGGATAACTGCCTTGAATACAAAAGGTCACACTGTAATGCAACATTATAAATTA]
consensusID : consensus_10469#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence
[GTCAGTTTCTTGCGGCTATGAGATCTTATTGCCGGTGAGGGAGGTAAATGCTGCGCCGACGGAAAGGTTCTCAAGCTGGGGATCCCTGTTTCCGTGTCATCTATGTATCTTCGAGCTGTCTTTTTCTGACGGATCTTGACTGGAGTATCTTGTCCCTGATGATCAGTCTCTGCGTGACACTCTGAAGAAAAGGCTGTGCAGATGAAAACTGTAAGACCTTGCCTAGAGGCTAGAATATAACCGAGCACTGGAGTATTTTAGAGAACCGGGCAAGCAAGCATTCTTCAGCCTTCCAGCTTCCTGGCATAAATGTTGATGAATTTGTCGCCATGAATATCTATTAGCCCCTAACAAACTTATCTAGCTTGATCATCTATCTCGTTGATTAAGACACAGTTTCCACCTGGGGACCGTGTGATCGACGGAGTCCTGAAATTTGTTACTGAAGCAGTCAAGCAGAGGATGTAATACTGTGCTGTAACCAGATCTTCACGTTGTTCGCTAGACCGGCAAACCGGCATTACTACAAAAAAAAAAAAAAAAAACC]
[-] EMBL CF325545 [GTCAGTTTCTTGCGGCTATGAGATCTTATTGCCGGTGAGGGAGGTAAATGCTGCGCCGACGGAAAGGTTCTCAAGCTGGGGATCCCTGTTTCCGTGTCATCTATGTATCTTCGAGCTGTCTTTTTCTGACGGATCTTGACTGGAGTATCTTGTCCCTGATGATCAGTCTCTGCGTGACACTCTGAAGAAAAGGCTGTGCAGATGAAAACTGTAAGACCTTGCCTAGAGGCTAGAATATAACCGAGCACTGGAGTATTTTAGAGAACCGGGCAAGCAAGCATTCTTCAGCCTTCCAGCTTCCTGGCATAAATGTTGATGAATTTGTCGCCATGAATATCTATTAGCCCCTAACAAACTTATCTAGCTTGATCATCTATCTCGTTGATTAAGACACAGTTTCCACCTGGGGACCGTGTGATCGACGGAGTCCTGAAATTTGTTACTGAAGCAGTCAAGCAGAGGATGTAATACTGTGCTGTAACCAGATCTTCACGTTGTTCGCTAGACCGGCAAACCGGCATTACTACAAAAAAAAAAAAAAAAAACC]
consensusID : consensus_10469#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence
[ACTGTACTCTGGCCCTAGTTTCATCACTAACAAAGAAAAATGTTCTTACATTTTTGGTAATTGAACTCTTGGTATTCTTATTGCAAAACATGAAAACGTACTTGTTAAACAACATATGCAGGTATATGGTTTCATGGAAAATTTGTGCAATACCTTACAGAAGCATCATGGTCTAGGTCTGCAGCCAGTGGCTCATTGTCCATTTTCTTCTGGAGGATCCATTTTGTAGTTTTTCGGTTCCTTCTATCCATCCTTAGATCTGTTAGGAACAGGAAGGCCTTGGCAACTGCCAAAGTGCTCACTAACAAACACACTGTTGCAGAGAGCCTTCCTGCTGGTGTTGAGAAGCCATAATCCCCATATCCAACTGTTGTCACAGAAATGACTGATAAATAGAAGCTATCAATCCAATTTAGACCCTCCAC]
[+] EMBL C74886 [ACTGTACTCTGGCCCTAGTTTCATCACTAACAAAGAAAAATGTTCTTACATTTTTGGTAATTGAACTCTTGGTATTCTTATTGCAAAACATGAAAACGTACTTGTTAAACAACATATGCAGGTATATGGTTTCATGGAAAATTTGTGCAATACCTTACAGAAGCATCATGGTCTAGGTCTGCAGCCAGTGGCTCATTGTCCATTTTCTTCTGGAGGATCCATTTTGTAGTTTTTCGGTTCCTTCTATCCATCCTTAGATCTGTTAGGAACAGGAAGGCCTTGGCAACTGCCAAAGTGCTCACTAACAAACACACTGTTGCAGAGAGCCTTCCTGCTGGTGTTGAGAAGCCATAATCCCCATATCCAACTGTTGTCACAGAAATGACTGATAAATAGAAGCTATCAATCCAATTTAGACCCTCCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10469#0 TGGGGGAGGCGCCGCGCGAGGGCAACTCCTCCGCGGTTCGCGCTGGCGGCATCTACCAGA 60
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ------------------------------------------------------------
consensus_10469#0 GACGGCGACCCGGCCCCGCCGACGTTCGAGCGGCTGCGGGAGCAGCTCCTACAGCTCCAC 120
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ------------------------------------------------------------
consensus_10469#0 GCAGAAGCCGACCTCACCCAATCCAAAGCAAATAGCACGAGGGTAAGGCTTGTGCGGTTG 180
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ------------------------------------------------------------
consensus_10469#0 ACTGAGGCTGCTGAGAATCTTAAGAAAAGAGCTGCGGTCAGCATCCGAATGGGCAAAGAG 240
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ------------------------------------------------------------
consensus_10469#0 AATGAGGCAGTGGATTTACTTGTGCAAAAGAAGAAGCTGACCAAAGCTCTTGAAAGCATA 300
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ------------------------------------------------------------
consensus_10469#0 AAACAGCGCATTGAGGTGCTTGATAAGCTTTCCATGAAAATCAGTGAGGCAATTTCAGTG 360
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ------------------------------------------------------------
consensus_10469#0 AAGCAGAACATGTTAATTGAACATGCATTGCATCCAGGGATGTCTAATGGCAAAGAATCC 420
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ------------------------------------------------------------
consensus_10469#0 AATGACAACATAAGAGTTTTCTCTAGTAAAGTTGGTGATGAGGCTGATGAGACTACTAGC 480
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ------------------------------------------------------------
consensus_10469#0 TCTCCTGCGAAATCATCTGAAAAGGCATTTGATCTGCAACATGTGGTGCATTCAGGCATG 540
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ------------------------------------------------------------
consensus_10469#0 ACTGGCCAGTTGGAGCAAAGTGAACTTCAGACGTCCGATAGCTTCTCATTTTCCAGTGAT 600
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ------------------------------------------------------------
consensus_10469#0 CTTGAATCACCAAACAGCATAACTAACCATTCTTCTTATGATGCTTTTCTAGACCATATT 660
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ------------------------------------------------------------
consensus_10469#0 GGTTTTCAGCTGGATTCATTAGAATGTGAAATTGAACAATATATCGTTTCCCAACTAGCA 720
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ------------------------------------------------------------
consensus_10469#0 GAACAGGTGGACATTCAGAAGCCAATAAATGCCAAGTGGCAAAAATTGTCTGACGTATTG 780
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ------------------------------------------------------------
consensus_10469#0 AAGCTTGTAACTGAAACTAGAGAAAGGATTGCAAAGATTGTGGATAATACAGTAAAGGAG 840
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ------------------------------------------------------------
consensus_10469#0 GCTGGATCTGAGGACTGAGGTCATAGCGAAGTATATAAAGCAATGTATTGATGACATCAA 900
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ------------------------------------------------------------
consensus_10469#0 ACCCTGTTTCTTTTATTTGTAACATGGTATATGGTTTCATGGAAAATTTGTGCAATACCT 960
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ------------------------------------------------------------
consensus_10469#0 TACAGAAGCATCATGGTCTAGGTCTGCAGCCAGTGGCTCATTGTCCATTTTCTTCTGGAG 1020
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ------------------------------------------------------------
consensus_10469#0 GATCCATTTTGTAGTTTTTCGGTTCCTTCTATCCATCCTTAGATCTGTTAGGAACAGGAA 1080
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ------------------------------------------------------------
consensus_10469#0 GGCCTTGGCAACTGCCAAAGTGCTCACTAACAAACACACTGTTGCAGAGAGCCTTCCTGC 1140
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ------------------------------------------------------------
consensus_10469#0 TGGTGTTGAGAAGCCATAATCCCCATATCCAACTGTTGTCACAGAAATGACTGATAAATA 1200
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ------------------------------------------------------------
consensus_10469#0 GAAGCTATCAATCCAATTTAGACCCTCCACCTCATGCACTATGATTGTACAAATTGAGAT 1260
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ------------------------------------------------------------
consensus_10469#0 GGTGCCTACAACAACCCCTAACGCAAGTAGTACTTTCATCCTCCCTCTTGATCTTTTCTT 1320
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ------------------------------------------------------------
consensus_10469#0 TTCAGCATCAATCATATAGGTGTCAAATACCCTATTAAGCTTGTTATCATCCATTGTGCT 1380
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ------------------------------------------------------------
consensus_10469#0 AAGTAAGACTGTTCTCTGCTTGTCAAGTACATTTGTCAACAGCTCATTTAGCACAATGTC 1440
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ------------------------------------------------------------
consensus_10469#0 AACAAAGCGAACACCGATTAGTAGAAACAAGCATGTGAACACCTTTGTGAAGGTAGTGCA 1500
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ------------------------------------------------------------
consensus_10469#0 AGGGACTATGTCACCGTATCCTATGGTGCACAAGCTTATGATGGTGAAGTAAAGGCCATC 1560
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ------------------------------------------------------------
consensus_10469#0 AACTAACTTCAGTGTGGACCTCCCCTTGAAGCCTTCAACATTTGTGATGTATACAAGGAC 1620
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 -------------------TGGGGGAGGCGCCGCGCGAGGGCAACTCCTCCGCGGTTCGC 41
consensus_10469#0 TCCTATTGAGATGTACAAGATGACGCTAACGATAGCCTGCCTTGCAAATGATGGTACGTG 1680
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 GCTGGCGGCATCTACCAGAGACGGCGACCCGGCCCCGCCGACGTTCGAGCGGCTGCGGGA 101
consensus_10469#0 TTGTGCAGCATGGCTTTGCTCATTGAACTCATCTGCACAGGGAGTTTATTTGATTGATGT 1740
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 GCAGCTCCTACAGCTCCACGCAGAAGCCGACCTCACCCAATCCAAAGCAAATAGCACGAG 161
consensus_10469#0 GAACATAGAAGGAGAAGAATGCACCCGCTGGAAATTTTGTGCGGTAACTATATTGCCATT 1800
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 GGTAAGGCTTGTGCGGTTGACTGAGGCTGCTGAGAATCTTAAGAAAAGAGCTGCGGTCAG 221
consensus_10469#0 TCCGCTAGTATGTAACGGATGATTGGGAGTATTGGGGTTACCTTTGCTATTTGTACTTGG 1860
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 CATCCGAATGGGCAAAGAGAATGAGGCAGTGGATTTACTTGTGCAAAAGAAGAAGCTGAC 281
consensus_10469#0 GTGAAAGGAAGTCACGAACCTGTTTGGGACATCGGAGGATTTTCTTCTGTCTTGTCTTGA 1920
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 CAAAGCTCTTGAAAGCATAAAACAGCGCATTGAGGTGCTTGATAAGCTTTCCATGAAAAT 341
consensus_10469#0 AGAGTATACTTGATCACGGTGGACTACAGGCAGCAGGTGCTCTTCCATGGTAGACATGTT 1980
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 CAGTGAGGGATGTCTAATGGCAAAGAATCCAATGACAACATAAGAGTTTTCTCTAGTAAA 401
consensus_10469#0 AGATCTTGGATTCATCAGCTCACAGCTTGCAGTTCTCAGGACTGTACTCATCAATTTATA 2040
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 GTTGGTGATGAGGCTGATGAGACTACTAGCTCTCCTGCGAAATCATCTGAAAAGGCATTT 461
consensus_10469#0 TCCATGGCAGTTCTGCTGTGATCTCGGTGATGGAATTGGTAACCACGAGATGGTCGTCAA 2100
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 GATCTGCAACATGTGGTGCATTCAGGCATGACTGGCCAGTTGGAGCAAAGTGAACTTCAG 521
consensus_10469#0 TCAAGGATGTACACTTACCTGCTCTTTCTGGGTTGAAAGGAGTGTATCAAATCTCAAAAC 2160
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ACGTCCGATAGCTTCTCATTTTCCAGTGATCTTGAATCACCAAACAGCATAACTAACCAT 581
consensus_10469#0 ATATCTTTCTTATTTATTGCAACATTTATATCACGTAGTTTCCAGTATATTGCATAGTAG 2220
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 TCTTCTTATGATGCTTTTCTAGACCATATTGGTTTTCAGCTGGATTCATTAGAATGTGAA 641
consensus_10469#0 CTGATACAAGAGGCAATTGATGAAAGGGAAGGAAAAGACGGATATCAAGATTAACAATGG 2280
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 ATTGAACAATATATCAGTTCCCAACTAGCAGAACAGGTGGACATTCAGAAGCCAATAAAT 701
consensus_10469#0 CTTGTTAGCATTCTGATTTTGCAAGTTGGCCTTCCCTTCTCTGGGATGATCCATTGACAT 2340
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 GCCAAGTGGCAAAAATTGTCTGACGTATTGAAGCTTGTAACTGAAACTAGAGAAAGGATT 761
consensus_10469#0 AAAGGCAATGCCATATTCTCCAGGACTCTGTTCTACAACAGGGGTTGCCTTTTTCTGGAT 2400
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 GCAAAGATTGTGGATAATACAGTAAAGGAGGCTGGATCTGAGGACTGAGGTCATAGCGAA 821
consensus_10469#0 GGGAACATGTCAGTTTCTTGCGGCTATGAGATCTTATTGCCGGTG-----AGGGAGGTAA 2455
consensus_10469#2 --------GTCAGTTTCTTGCGGCTATGAGATCTTATTGCCGGTG-----AGGGAGGTAA 47
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 GTATATAAAGCAATGTATTGATGACATCAAACCCTGTTTCTTTTATTTGTAACATGGTAA 881
consensus_10469#0 ATGCTGCGCCGACGGAAAGGTTCTCAA-GCTGGGGATCCCTGTTTCCGTGTCATCT-ATG 2513
consensus_10469#2 ATGCTGCGCCGACGGAAAGGTTCTCAA-GCTGGGGATCCCTGTTTCCGTGTCATCT-ATG 105
consensus_10469#3 ACTGTACTCTGGCCCTAGTTTCATCACTAACAAAGAAAAATGTTCTTACATTTTTG-GTA 59
consensus_10469#1 GTTGTGTCATTGTTTTGATTTCACTGCACATAGCTTAGATTATCACTATTTTCTTGTATG 941
* * * * * * *
consensus_10469#0 TATCTTCGAGCTGTCTTTTTCTGACGGATCTTGACTGGAGTATCTTGTCCCTGATGATCA 2573
consensus_10469#2 TATCTTCGAGCTGTCTTTTTCTGACGGATCTTGACTGGAGTATCTTGTCCCTGATGATCA 165
consensus_10469#3 ATTGAACTCTTGGTATTCTTATTGCAAAACATGAA-AACGTA-CTTGTTAAACAACATAT 117
consensus_10469#1 AGACGATCTTATGATTCTTTAATATCAATTGTTTATTGTCTA-CCTGCCTCTTTGCTTGT 1000
* * ** * * ** * ** *
consensus_10469#0 GTCTCTGCGTGACACTCTGAA---GAAAAGGCTGTGCAGATGAAAACTGTAAGACCTTGC 2630
consensus_10469#2 GTCTCTGCGTGACACTCTGAA---GAAAAGGCTGTGCAGATGAAAACTGTAAGACCTTGC 222
consensus_10469#3 GCAGGTATATGG---TTTCAT---GGAAAATTTGTGCAATACCTTACAGAAGCATCATGG 171
consensus_10469#1 ATACCTAAATATCAATACAATCTAGAAACAAATATGCAAGAAATCCTGAAGCTGAAGTTA 1060
* * * * * ** * **** *
consensus_10469#0 CTAGAGGCTAGAATATAACCGAGCACTGGAGTATTTTAGAGAACCGGGCAAGCAAGCATT 2690
consensus_10469#2 CTAGAGGCTAGAATATAACCGAGCACTGGAGTATTTTAGAGAACCGGGCAAGCAAGCATT 282
consensus_10469#3 TCTAGGTCTGCAGC-CAGTGGCTCATTGTC-CATTTT------CTTCTGGAGGATCCATT 223
consensus_10469#1 TGATTGAATTCATTCAACCAGCACATGGAC-TTTTACTTCTAACCAAGAAACAGAGTACT 1119
* * * * * ** * ** * * * *
consensus_10469#0 CTTCA----------GCTTTCCAGCTTCCTGGCA----TAAATGTTGATGAATTTGTCGC 2736
consensus_10469#2 CTTCA----------GCCTTCCAGCTTCCTGGCA----TAAATGTTGATGAATTTGTCGC 328
consensus_10469#3 TTGTA----------GTTTTTCGG-TTCCTTCTA----TCCATCCT--TAGATCTGTT-- 264
consensus_10469#1 TCGAATAGCGAGGTTATTTAATAGGTTACCCACACATGTGCATGCTTTAGTGTCTGTTTA 1179
* * * ** * * * ** * * ***
consensus_10469#0 CATGAATATCTATTAGCCCCTAACAAACTTATCTAGCTTGATCATCTA-TCTCGTTGATT 2795
consensus_10469#2 CATGAATATCTATTAGCCCCTAACAAACTTATCTAGCTTGATCATCTA-TCTCGTTGATT 387
consensus_10469#3 -AGGAACA---GGAAGGCCTTGGCAACT---GCCAAAGTGCTCA-CTA-ACAAACACACT 315
consensus_10469#1 ACAAAGTATAAGACAGCAACTATCACTATGATATCAGGTATTCATATACATTCTGTAAAT 1239
* * ** * ** * *** ** * *
consensus_10469#0 AAGACACAGTTTCCACC--TGGGGACCGTGTGATCG------ACGGAGTCCTGAAATTTG 2847
consensus_10469#2 AAGACACAGTTTCCACC--TGGGGACCGTGTGATCG------ACGGAGTCCTGAAATTTG 439
consensus_10469#3 GTTGCAGAGAGCCTTCC--TGCTGGTGTTGAGAA-G------CCATAATCCCCATATCCA 366
consensus_10469#1 CATACTTATAATTTTCCAATGATGTCCGCAAGAGTGATCTTTCCACACTTTGCAAGGCCA 1299
* * ** ** * ** * * * * *
consensus_10469#0 --TTACTGAAGCAGTCAAGCAGAGGATGTAATAC--TGTGCTGTAACCAGATCTTCACGT 2903
consensus_10469#2 --TTACTGAAGCAGTCAAGCAGAGGATGTAATAC--TGTGCTGTAACCAGATCTTCACGT 495
consensus_10469#3 A-CTGTTGTCACAG--AAATGACTGATA-AATAG--AAGCTATCAATCCAATTTAGACCC 420
consensus_10469#1 AGCTGATCAAACTGGTCTGAGATCATTGCAATGTCTTTGTCATCGATCTTTCCTATCTCT 1359
* * * * * *** * * *
consensus_10469#0 TGTT--CGCTAGACCGGCAAACCGGCATTACTACATATGGTCTGA--------------- 2946
consensus_10469#2 TGTT--CGCTAGACCGGCAAACCGGCATTACTACAAAAAAAAAAAAAAAAAACC------ 547
consensus_10469#3 TCCA--C----------------------------------------------------- 425
consensus_10469#1 TTGAGTTTGTAGATCAGAAAGTCCGATTTGCTGTGGCATAAAAAGAAAAAGACCACAAAG 1419
*
consensus_10469#0 ------------------------------------------------------------
consensus_10469#2 ------------------------------------------------------------
consensus_10469#3 ------------------------------------------------------------
consensus_10469#1 TTAGGACTGGATAACTGCCTTGAATACAAAAGGTCACACTGTAATGCAACATTATAAATT 1479
consensus_10469#0 -
consensus_10469#2 -
consensus_10469#3 -
consensus_10469#1 A 1480
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||