These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10473#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 812 fasta sequence [TGATCCAGCTCGATCTAACCGATCGATTCATCATCAACAATTCACAAGAACTCCATCACTTACAGTGCAAATCAAGCTGATTTCATCAGACAAATTTCACTAATAACTAGCTTAGCTGCCGTAGAGCCGTGTGCGATCAAGATCGTATCATCCATGGCGTTCTACAAGTACGGCTTCGCCTTCTTGGCCGGCACCGGCTTCGGCGCCGCGCTCACCAGCCTCCGCCGCGACGGCGACAGCTGCTGCCCCATGCGCCGCCGCCGCCGCCGCTGTCGCCGCCACCACCACGACGACGACGACCAGCTGGTCGACGGCGACGGCGACGGCGAGGCTGCAGGGGAAGAGCGAGACATGAAGGAGAGCAAGAGGGCGACGACGACGACGAATCCGAAGGCCAAGAAAGGCAGCAACAAGGAGAAGAAGGCAGCTGCTAGTGTTGCTAGGGAGGAGGAGGATGACGATGATGAATAGGATTAATTTGAGTTGATTATTAATTAAGTTCAGTTTGAGTTCAGCTATTATATATTTTTAGGTGCTTGATTCCGTTGCTGTGCCAGTTTAATTGTGCTTGTTTAGCTCTGTACTCGTTATCCTGTTGTGTGTATTGACAAAAATAAGAGAATATACATATATACCTCTCTGTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCTTACCTAACGTTTTGGGGGCCGGCAAAAAAAAAAAAAAAAACCCTTGTATGCCCTTACCTAACGTATTGTTGAACACAAAAAAAA] [+] EMBL AK109215 [TGATCCAGCTCGATCTAACCGATCGATTCATCATCAACAATTCACAAGAACTCCATCACTTACAGTGCAAATCAAGCTGATTTCATCAGACAAATTTCACTAATAACTAGCTTAGCTGCCGTAGAGCCGTGTGCGATCAAGATCGTATCATCCATGGCGTTCTACAAGTACGGCTTCGCCTTCTTGGCCGGCACCGGCTTCGGCGCCGCGCTCACCAGCCTCCGCCGCGACGGCGACAGCTGCTGCCCCATGCGCCGCCGCCGCCGCCGCTGTCGCCGCCACCACCACGACGACGACGACCAGCTGGTCGACGGCGACGGCGACGGCGAGGCTGCAGGGGAAGAGCGAGACACGAAGGAGAGCAAGAGGGCGACGACGACGACGAATCCGAAGGCCAAGAAAGGCAGCAACAAGGAGAAGAAGGCAGCTGCTAGTGTTGCTAGGGAGGAGGAGGATGACGATGATGAATAGGATTAATTTGAGTTGATTATTAATTAAGTTCAGTTTGAGTTCAGCTATTATATATTTTTAGGTGCTTGATTCCGTTGCTGCGCCAGTTTAATTGTGCTTGTTTAGCTCTGTACTCGTTATCCTGTTGTGTGTATTGACAAAAATAAGAGAATATACATATATACCT ] [+] EMBL CF325892 [ CTCGATCTAACCGATCGATTCATCATCAACAATTCACAAGAACTCCATCACTTACAGTGCAAATCAAGCTGATTTCATCAGACAAATTTCACTAATAACTAGCTTAGCTGCCGTAGAGCCGTGTGCGATCAAGATCGTATCATCCATGGCGTTCTACAAGTACGGCTTCGCCTTCTTGGCCGGCACCGGCTTCGGCGCCGCGCTCACCAGCCTCCGCCGCGACGGCGACAGCTGCTGCCCCATGCGCCGCCGCCGCCGCCGCTGTCGCCGCCACCACCACGACGACGACGACCAGCTGGTCGACGGCGACGGCGACGGCGAGGCTGCAGGGGAAGAGCGAGACATGAAGGAGAGCAAGAGGGCGACGACGACGACGAATCCGAAGGCCAAGAAAGGCAGCAACAAGGAGAAGAAGGCAGCTGCTAGTGTTGCTAGGGAGGAGGAGGATGACGATGATGAATAGGATTAATTTGAGTTGATTATTAATTAAGTTCAGCTTGAGTTCAGCTATTATATATTTTTAGGTGCTTGATTCC ] [+] EMBL AU078617 [ CATCATCAACAATTCACAAGAACTCCATCACTTACAGTGCAAATCAAGCTGATTTCATCAGACAAATTTCACTAATAACTAGCTTAGCTGCCGTAGAGCCGTGTGCGATCAAGATCGTATCATCCATGGCGTTCTACAAGTACGGCTTCGCCTTCTTGGCCGGCACCGGCTTCGGCGCCGCGCTCACCAGCCTCCGCCGCGANGGCGACAG TGCTGCCCCATGCGCCGCCGCNGCCGCC ] [+] EMBL AU078618 [ TCTTGGCCGGCACNGGCTTCGGCGCCGCGCTCACCAGCCTCCGCCGCGACGGCGACAGCTGCTGCCCNATGCGCCGCCGCCGCCG CNCTGTCGCCGCCACCACCACGACGACGACGACCAGCTGGTCGACGGCGACGGCGACGGCGAGGCTGCAGGGGAAGAGCGAGACATGAAGGAGAGCAAGAGGGCGACGACGACGACGAATCCGAAGGCCAAGAAAGGCAGCAACAAGGAGAAGAAGGCAGCTGCTAGTGTTGCTAGGGAGGAGGAGGATGACGATGATGAATAGGATTAATTTGAGTTGATTATTAATTAAGTTCAGTTTGAGTTCAGCTATTATATATTTTTAGGTGCTTGATTCCGTTGCTGTGCCAGTTTAATTGTGCTTGTTTAGCTCTGTACTCGTTATCCTGTTGTGTGTATTGACAAAAATAAGAGAATATACATATATACCTCTCTGTTGTTAAAAAAA ] [+] EMBL CF313438 [ CAAGGAGAAGAAGGCAGCTGCTAGTGTTGCTAGGGAGGAGGAGGATGACGATGATGAATAGGATTAATTTGAGTTGATTATTAATTAAGTTCAGTTTGAGTTCAGCTATTATATATTTTTAGGTGCTTGA ] [+] EMBL CF314037 [ ATTCCGTTGCTGTGCCAGTTTAATTGTGCTTGTTTAGCTCTGTACTCGTTATCCTGTTGTGTGTATTGACAAAAATAAGAGAATATACATATATACCTCTCTGTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCTTACCTAACGTTTTGGGGGCCGGCAAAAAAAAAAAAAAAAACCCTTGTATGCCCTTACCTAACGTATTGTTGAACACAAAAAAAA] consensusID : consensus_10473#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 317 fasta sequence [AAGGAGCCCGAGGGCCCTTGCCATGGGCTGAAGGGGTAGAAAGGCCCCCCCAAGGAAAAAAAGGCACCTGTTAGTTTTGTTAGGGAGGAGGGGGATGCCCATTATGAATAGGATTAATTTGAGTTGATTATTAATTAAGTTCAGTTTGAGTTCAGCTATTATATATTTTTAGGGGCTTGATTCCGGTGCTGGGCCAGTTTAATTGGGCTTGTTTAGCTCGGGACTCGTTATCCTGTTGGGGGGATTGCCAAAAATAAGGGAATTTCCCTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF313439 [AAGGAGCCCGAGGGCCCTTGCCATGGGCTGAAGGGGTAGAAAGGCCCCCCCAAGGAAAAAAAGGCACCTGTTAGTTTTGTTAGGGAGGAGGGGGATGCCCATTATGAATAGGATTAATTTGAGTTGATTATTAATTAAGTTCAGTTTGAGTTCAGCTATTATATATTTTTAGGGGCTTGATTCCGGTGCTGGGCCAGTTTAATTGGGCTTGTTTAGCTCGGGACTCGTTATCCTGTTGGGGGGATTGCCAAAAATAAGGGAATTTCCCTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10473#0 TGATCCAGCTCGATCTAACCGATCGATTCATCATCAACAATTCACAAGAACTCCATCACT 60 consensus_10473#1 ------------------------------------------------------------ consensus_10473#0 TACAGTGCAAATCAAGCTGATTTCATCAGACAAATTTCACTAATAACTAGCTTAGCTGCC 120 consensus_10473#1 ------------------------------------------------------------ consensus_10473#0 GTAGAGCCGTGTGCGATCAAGATCGTATCATCCATGGCGTTCTACAAGTACGGCTTCGCC 180 consensus_10473#1 ------------------------------------------------------------ consensus_10473#0 TTCTTGGCCGGCACCGGCTTCGGCGCCGCGCTCACCAGCCTCCGCCGCGACGGCGACAGC 240 consensus_10473#1 ------------------------------------------------------------ consensus_10473#0 TGCTGCCCCATGCGCCGCCGCCGCCGCCGCTGTCGCCGCCACCACCACGACGACGACGAC 300 consensus_10473#1 ------------------------------------------------------------ consensus_10473#0 CAGCTGGTCGACGGCGACGGCGACGGCGAGGCTGCAGGGGAAGAGCGAGACATGAAGGAG 360 consensus_10473#1 --------------------------------------------------------AAGG 4 * consensus_10473#0 AGCAAGAGGGCGACGACGACGACGAATCCGAAGGCCAAGAAAGGCAGCAACAAGGAGAAG 420 consensus_10473#1 AGCCCGAGGGCCCTTGCCATGG----GCTGAAGGGGTAGAAAGGCCCCCCCAAGGAAAAA 60 *** ****** * * * * ***** ******** * ****** ** consensus_10473#0 AAGGCAGCTGCTAGTGTTGCTAGGGAGGAGGAGGATGACGATGATGAATAGGATTAATTT 480 consensus_10473#1 AAGGCACCTGTTAGTTTTGTTAGGGAGGAGGGGGATGCCCATTATGAATAGGATTAATTT 120 ****** *** **** *** *********** ***** * ** ***************** consensus_10473#0 GAGTTGATTATTAATTAAGTTCAGTTTGAGTTCAGCTATTATATATTTTTAGGTGCTTGA 540 consensus_10473#1 GAGTTGATTATTAATTAAGTTCAGTTTGAGTTCAGCTATTATATATTTTTAGGGGCTTGA 180 ***************************************************** ****** consensus_10473#0 TTCCGTTGCTGTGCCAGTTTAATTGTGCTTGTTTAGCTCTGTACTCGTTATCCTGTTGTG 600 consensus_10473#1 TTCCGGTGCTGGGCCAGTTTAATTGGGCTTGTTTAGCTCGGGACTCGTTATCCTGTTGGG 240 ***** ***** ************* ************* * **************** * consensus_10473#0 TGTATTGACAAAAATAAGAGAATATACATATATACCTCTCTGTTGTTAAAAAAAAAAAAA 660 consensus_10473#1 GGGATTGCCAAAAATAAGGGAAT-------------TTCCCTTTTTTAAAAAAAAAAAAA 287 * **** ********** **** * * ** *************** consensus_10473#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTG 720 consensus_10473#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------------ 317 ****************************** consensus_10473#0 TTTTCCCTTACCTAACGTTTTGGGGGCCGGCAAAAAAAAAAAAAAAAACCCTTGTATGCC 780 consensus_10473#1 ------------------------------------------------------------ consensus_10473#0 CTTACCTAACGTATTGTTGAACACAAAAAAAA 812 consensus_10473#1 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||