These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1048#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGAAAAAATTTGAACAAAAAAATTTTGGGGCCCCAAAAATTTAAAAAAAATTTTTTCCTCTTTTACCCCTTTAAAGGGCCAAGGGGGAAATTCCGGGCCCAAAAAAAAAATCCCCCCTTAAGGGGGGGGTTTAAAAAAAACGGGGCCCGGTTTTAAAACCCCGGGAGGGGGAAAAACCCGGGGGTCCCCCAATAAAAAGCCTTGGGAAAAAACCCCCTTTTTCCCAGGGGGGGAAAAAAAAAAAAGGCCCCCCCCATTCCCCTTTCCAAAAATGGGCCCCCCTTTTATTTCGGGGGGTTAAGGGTTCCCCCCTTAAAAAAAAAAACCCCCTTCCCCTTTTTGGGGGGGGACCAAAAAAAATTTTTTCCCCCCCCGGGGCAAAGAGGGGGAACCC] [+] EMBL CF335322 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGAAAAAATTTGAACAAAAAAATTTTGGGGCCCCAAAAATTTAAAAAAAATTTTTTCCTCTTTTACCCCTTTAAAGGGCCAAGGGGGAAATTCCGGGCCCAAAAAAAAAATCCCCCCTTAAGGGGGGGGTTTAAAAAAAACGGGGCCCGGTTTTAAAACCCCGGGAGGGGGAAAAACCCGGGGGTCCCCCAATAAAAAGCCTTGGGAAAAAACCCCCTTTTTCCCAGGGGGGGAAAAAAAAAAAAGGCCCCCCCCATTCCCCTTTCCAAAAATGGGCCCCCCTTTTATTTCGGGGGGTTAAGGGTTCCCCCCTTAAAAAAAAAAACCCCCTTCCCCTTTTTGGGGGGGGACCAAAAAAAATTTTTTCCCCCCCCGGGGCAAAGAGGGGGAACCC] consensusID : consensus_1048#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 415 fasta sequence [TTCCCAATCACCACTTTCACCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGGCTTTCCTTACCAAAGGGCAATTTCCCGCCCCTTAAATTAATTTCCCCTTTTAGGGATTCTTTTTACATTTCATTGCCCGTCTTTTTACAACTTCGGAATTGGAAAACCCTTGCCTTTCCCCAATTTATTCCCTTTGCACCAAATCCCCTTTTCCCCACTTGGCTTAATACCAAAAAGGCCCCCCCCAATCCCCTTTCCAAACATTTGCCCACCCTTTACTTCCGGAATTTAAAGGTTTACCCCTTTAAAAAAAAAACCCGTTTTCGTTTTTTTGGGGATGTCCAAAGTGATTTTTTTGCCCC] [+] EMBL CF318672 [TTCCCAATCACCACTTTCACCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGGCTTTCCTTACCAAAGGGCAATTTCCCGCCCCTTAAATTAATTTCCCCTTTTAGGGATTCTTTTTACATTTCATTGCCCGTCTTTTTACAACTTCGGAATTGGAAAACCCTTGCCTTTCCCCAATTTATTCCCTTTGCACCAAATCCCCTTTTCCCCACTTGGCTTAATACCAAAAAGGCCCCCCCCAATCCCCTTTCCAAACATTTGCCCACCCTTTACTTCCGGAATTTAAAGGTTTACCCCTTTAAAAAAAAAACCCGTTTTCGTTTTTTTGGGGATGTCCAAAGTGATTTTTTTGCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1048#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 consensus_1048#1 ---------------------------------TTCCCAATCACCACTTTCACCTGAAAA 27 ** * *** * consensus_1048#0 TTTTTTTTTTTTTTTTTTGGGGAAAAAATTTGAACAAAAAAATTTTGGGGCCCCAAAAAT 120 consensus_1048#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 87 ****** ** ******* ***** consensus_1048#0 TTAAAAAAAATTTTTTCCTCTTTTACCCCTTTAAAGGGCCAAGGGGGAAATTCCGGGCCC 180 consensus_1048#1 AAAAAAAAAAAAAACCCCTGTCTTGGCTTTCCTTA---CCAAAGGGCAATTTCCCGCCCC 144 ******** *** * ** * * * **** *** ** **** * *** consensus_1048#0 AAAAAAAAAATCCCCCCTTAAGGGGGGGGTTTAAAAAAAACGGGGCCCGGTTTTAAAACC 240 consensus_1048#1 TTAAATTAATTTCCCCTTTTAGGGATTCTTTTTACATTTCATTGCCCGTCTTTTTACAAC 204 *** ** * **** ** **** *** * * * ** **** * * * consensus_1048#0 CCGGGAGGGGGAAAAACCCGGGGGTCCCCCAATAAAAAGCCTTGGGAAAAAACCCCCTTT 300 consensus_1048#1 TTCGGAATTGGAAAACCCTTGCCTTTCCCCAATTTATTCCCTTTGCACCAAATCCCCTTT 264 *** ****** ** * * ******* * **** * * *** ******* consensus_1048#0 TTCCCAGGGGGGGAAAAAAAAAAAAGGCCCCCCCCATTCCCCTTTCCAAAAATGGGCCCC 360 consensus_1048#1 TCCCCACTTGGCTTAATACCAAAAAGGCCCCCCCCAATCCCCTTTCCAAACATTTGCCCA 324 * **** ** ** * **************** ************* ** **** consensus_1048#0 CCTTTTATTTCGGGGGGTTAAGGGTTCCCCCCTTAAAAAAAAAAACCCCCTTCCCCTTTT 420 consensus_1048#1 CCCTTTACTTCCGGAATTTAAAGGTTTACCCCTTTAAAAAAAAAACCCGTTTTCGTTTTT 384 ** **** *** ** **** **** ****** ************* ** * **** consensus_1048#0 TGGGGGGGGACCAAAAAAAATTTTTTCCCCCCCCGGGGCAAAGAGGGGGAACCC 474 consensus_1048#1 TTGGGGATGTCCAAAGTGATTTTTTTGCCCC----------------------- 415 * **** * ***** * ****** **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||