cluster # 10480

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Oryza sativa
cluster # 10480 cluster # 10480 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10480#0 length = 1018 sequences # 6

consensus_10480#1 length = 314 sequences # 1

consensusID : consensus_10480#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1018
fasta sequence

                              [CGCGCGCGCGCGCGGCGCGGGTGGTTTACGCAAGCTGAGCTGCCGCCGCGCGGCTTGCTAGTTAGCGTCAAATCGATCGGTTCGAGCCCTGCAATAGGAGTCCCACGCAAGCAACTCCTTCCTCCTCTTAACCACGCCCTCTCTCACCGTCGTCTTCCTCAATTCCCTCTACCCCTCACCGCCCGCACGCGCGCGCTGCCTAGCTAACACAAACCGCCATTGCTTCCCCTCCTCCTCCTTGCCGCCGTGCTTAGCTTGCTGTTTGTAGCTTGTTGGCTAGAGAGGTCGTCGTACGCCGGTGGCTGGCGATCGCCGGCCGGCCGGTGGTCCATGACTAACGGTGCCGCGAGCTGCCAGCCTGC-AGCGC-GGTGGACATGAGCCGGCGACTCGGCGCCGCGGCTG-CGTCCTCCTCCTGTGGCTCGCCGTGCTCACCTTCGCCTTCCACGGCTACTACGGCGGCCGCCTCGGCTCCGCGAGGCGGCGGAATATCCTCCTCCAACACCCGGCGCTAGCGCTCCATCTCCCCACCAGGAAGATGCTCCTCGCCGTGGCGAGCTTCGACGACGCCTCCTCGCCATCGTCGTTGACGACCACCGATCGTCATCATCACCATCACAGGCATCATGGCCACCACCATCATCGCGGCCATG-ATCGGTGGAACAGG-AAGGGTGTCCCGCC-G-ACGGCAGCTGGGCC-GGGCG-AGG-AGGTCG-ACCCGCGGTTCGGCGTGCAG-AAG-AGGCTGGTCCCGACGGGCCCCAACCCCCTGCACCATTGATGCCGGCGGCTCGCCATTGATGGGTGCTCGAGTTTTTCTGCGGTGAGTCACGCGCACATATACACTACTACACCGTTCTTGTTGTGTTCAT-CGATCGACCAAAGGCTAGCTAGCTAGCTAGCACAGTAATATTGATTCCAATTCCAACCTGTGGATGAATTCAAGAAAGCATTGCCGATGTGTGTGTGCTCTTGCATGTATGTACCACGATCATATCAGAAAGCTTCAAAACAAGAGGAGAAAAAGAAA]

[+] EMBL AK061156             [CGCGCGCGCGCGCGGCGCGGGTGGTTTACGCAAGCTGAGCTGCCGCCGCGCGGCTTGCTAGTTAGCGTCAAATCGATCGGTTCGAGCCCTGCAATAGGAGTCCCACGCAAGCAACTCCTTCCTCCTCTTAACCACGCCCTCTCTCACCGTCGTCTTCCTCAATTCCCTCTACCCCTCACCGCCCGCACGCGCGCGCTGCCTAGCTAACACAAACCGCCATTGCTTCCCCTCCTCCTCCTTGCCGCCGTGCTTAGCTTGCTGTTTGTAGCTTGTTGGCTAGAGAGGTCGTCGTACGCCGGTGGCTGGCGATCGCCGGCCGGCCGGTGGTCCATGACTAACGGTGCCGCGAGCTGCCAGCCTGC AGCGC GGTGGACATGAGCCGGCGACTCGGCGCCGCGGCCGCCGTCCTCCTCCTGTGGCTCGCCGTGCTCACCTTCGCCTTGCACGGCTACTACGGCGGCCGCCTCGGCTCCGCGAGGCGGCGGAATATCCTCCTCCAACACCCGGCGCTAGCGCTCCATCTCCCCACCAGGAAGATGCTCCTCGCCGTGGCGAGCTTCGACGACGCCTCCTCGCCGTCGTCGTTGACGACCACCGATCGTCATCATCACCATCACAGGCATCATGGCCACCACCATCATCGCGGCCATG ATCGGTGGAACAGG AAGGGTGTCCCGCC G ACGGCAGCTGGGCC GGGCG AGG AGGTCG ACCCGCGGTTCGGCGTGCAG AAG AGGCTGGTCCCGACGGGCCCCAACCCCCTGCACCATTGATGCCGGCGGCTCGCCATTGATGGGTGCTCGAGTTTTTCTGCGGTGAGTCACGCGCACATATACACTACTACACCGTTCTTGTTGTGTTCAT CGATCGACCAAAGGCTAGCTAGCTAGCTAGCACAGTAATATTGATTCCAATTCCAACCTGTGGATGAATTCAAGAAAGCATTGCCGATGTGTGTGTGCTCTTGCATGTATGTACCACGATCATATCAGAAAGCTTCAAAACAAGAGGAGAAAAAGAAA]
[+] EMBL OS12732A             [                                                                                                               CAACTCCTTCCTCCTCTTAACCACGCCCTCTCTCACCGTCGTCTTCCTCAATTCCCTCTACCCCTGACCGCCCGCACGCGCGCGCTGCCTAGCTAACACAAACCGCCATTGCTTCCCCTNCTNCTCCTTGCCGCCGTGCTTAGCTTGCTGTTTGTAGCTTGTTGGCTAGAGAGGTCGTCGTACGCCGGTNGCTGGCGATCGCCGGCCGGCCGGTGGTCCATGACTAACGGTGCCGCGAGCTGCCAGCCTGCAAGCGCGGGTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB964432             [                                                                                                                                                                                                                                                                                                                                                                                                    ggaataGCTGCGG TG CGTCCTCCTCCTGTGGCTCGCCGTGCTCA CTTCGCCTTCCACGGCTACTACGGCGG CGCCTCGGCTCCGCGAGGCGGCGGAATATCCTCCTCCAACACCCGGCGCTAGCGCTCCATCTCCCCACCAGGAAGATGCTCCTCGCCGTGGCGAGCTTCGACGACGCCTCCTCGCCATCGTCGTTGACGACCACCGATCGTCATCATCACCATCACAGGCATCATGGCCACCACCATCATCGCGGCCATG ATCGGTGGAACAGG AAGGGTGTCCCGCC G ACGGCAGCTGGGCC GGGCG AGG AGGTCG ACCCGCGGTTCGGCGTGCAG AAG AGGCTGGTCCCGACGGGCCCCAACCCCCTGCACCATTGATGCCGGCGGCTCGCCATTGATGGGTGCTCGAGTTTTTCTGCGGTGAGTCACGCGCACATATACACTACTACACCGTTCTTGTTGTGTTCAT CGATCGACCAAAGGCTAGCTAGCTAGCTAGCACAGTAATATTGATTCCAATTCCA                                                                                                       ]
[+] EMBL CB966187             [                                                                                                                                                                                                                                                                                                                                                                                                             tgGGCTG CGT CTCCTCCTGTGGCTCG CGTGCTCA CTTCGCCTTCCACGGCTACTACGGCGGCCGCCTCGGCTCCGCGAGGCGGCGGAATATCCTCCTCCAACACCCGGCGCTAGCGCTCCATCTCCCCACCAGGAAGATGCTCCTCGCCGTGGCGAGCTTCGACGACGCCTCCTCGCCATCGTCGTTGACGACCACCGATCGTCATCATCACCATCACAGGCATCATGGCCACCACCATCATCGCGGCCATG ATCGGTGGAACAGG AAGGGTGTCCCGCC G ACGGCAGCTGGGCC GGGCG AGG AGGTCG ACCCGCGGTTCGGCGTGCAG AAG AGGCTGGTCCCGACGGGCCCCAACCCCCTGCACCATTGATGCCGGCGGCTCGCCATTGATGGGTGCTTCAATTTTTCTGCGGTGAGTCACGCGCACATATACACTACTACACCGTTCTTGTTGTGTTCAT CGATCGACCAAAGGCTAGCTAGCTAGCTAGCACAGTAATATTGATTCCAATTCCA                                                                                                       ]
[+] EMBL CB966184             [                                                                                                                                                                                                                                                                                                                                                                                                                        CCTCCTCCTGTGGCTCGCCGTGCTC CCTTCGCCTTCCACGGCTACTACGGCGGCCGCCTCGGCTCCGCGAGGCGGCGGAATATCCTCCTCCAACACCCGGCGCTAGCGCTCCATCTCCCCACCAGGAAGATGCTCCTCGCCGTGGCGAGCTTCGACGACGCCTCCTCGCCATCGTCGTTGACGACCACCGATCGTCATCATCACCATCACAGGCATCATGGCCACCACCATCATCGCGGCCATG ATCGGTGGAACAGG AAGGGTGTCCCGCC G ACGGCAGCTGGGCC GGGCG AGG AGGTCG ACCCGCGGTTCGGCGTGCAG AAG AGGCTGGTCCCGACGGGCCCCAACCCCCTGCACCATTGATGCCGGCGGCTCGCCATTGATGGGTGCTCGAGTTTTTCTGCGGTGAGTCACGCGCACATATACACTACTACACCGTTCTTGTTGTGTTCATNCGATCGACCAAAGGCTAGCTAGCTAGCTAGCACAGc                                                                                                                          ]
[+] EMBL CB965356             [                                                                                                                                                                                                                                                                                                                                                                                                                             TCCTGTGGCTCGCCGTGCTCACCTTCGCCTTCCACGGCTACTACGGCGGCCGCCTCGGCTCCGCGAGGCGGCGGAATATCCTCCTCCAACACCCGGCGCTAGCGCTCCATCTCCCCACCAGGAAGATGCTCCTCGCCGTGGCGAGCTTCGACGACGCCTCCTCGCCATCGTCGTTGACGACCACCGATCGTCATCATCACCATCACAGGCATCATGGCCACCACCATCATCGCGGCCATGCATCGGTGGAACAGGCAAGGGTGTCCCGCCTGCACGGCAGCTGGGCCTGGGCGCAGGCAGGTCGCACCTGCGGTTCGGCGTGCAGCAAGCAGGCTGGTCCCGACGGGCCCCAACCCCCTGCACCATTGATGCCGGCGGCTCGCCATTGATGGGTGCTCGAGTTTTTCTGCGGTGAGTCACGCGCACATATACACTACTACACCGTTCTTGTTGTGTTCAT CGATCGAACAAAGGCTAGCTAGCTAGCTAGCACAGTAATATTGATTCCAATTCCAACCTGTGGA                                                                                              ]




>consensus_10480#0
CGCGCGCGCGCGCGGCGCGGGTGGTTTACGCAAGCTGAGCTGCCGCCGCGCGGCTTGCTA
GTTAGCGTCAAATCGATCGGTTCGAGCCCTGCAATAGGAGTCCCACGCAAGCAACTCCTT
CCTCCTCTTAACCACGCCCTCTCTCACCGTCGTCTTCCTCAATTCCCTCTACCCCTCACC
GCCCGCACGCGCGCGCTGCCTAGCTAACACAAACCGCCATTGCTTCCCCTCCTCCTCCTT
GCCGCCGTGCTTAGCTTGCTGTTTGTAGCTTGTTGGCTAGAGAGGTCGTCGTACGCCGGT
GGCTGGCGATCGCCGGCCGGCCGGTGGTCCATGACTAACGGTGCCGCGAGCTGCCAGCCT
GCAGCGCGGTGGACATGAGCCGGCGACTCGGCGCCGCGGCTGCGTCCTCCTCCTGTGGCT
CGCCGTGCTCACCTTCGCCTTCCACGGCTACTACGGCGGCCGCCTCGGCTCCGCGAGGCG
GCGGAATATCCTCCTCCAACACCCGGCGCTAGCGCTCCATCTCCCCACCAGGAAGATGCT
CCTCGCCGTGGCGAGCTTCGACGACGCCTCCTCGCCATCGTCGTTGACGACCACCGATCG
TCATCATCACCATCACAGGCATCATGGCCACCACCATCATCGCGGCCATGATCGGTGGAA
CAGGAAGGGTGTCCCGCCGACGGCAGCTGGGCCGGGCGAGGAGGTCGACCCGCGGTTCGG
CGTGCAGAAGAGGCTGGTCCCGACGGGCCCCAACCCCCTGCACCATTGATGCCGGCGGCT
CGCCATTGATGGGTGCTCGAGTTTTTCTGCGGTGAGTCACGCGCACATATACACTACTAC
ACCGTTCTTGTTGTGTTCATCGATCGACCAAAGGCTAGCTAGCTAGCTAGCACAGTAATA
TTGATTCCAATTCCAACCTGTGGATGAATTCAAGAAAGCATTGCCGATGTGTGTGTGCTC
TTGCATGTATGTACCACGATCATATCAGAAAGCTTCAAAACAAGAGGAGAAAAAGAAA

consensusID : consensus_10480#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence

                              [TCCTGTGGCTCGCCGTGCTCACCTTCGCCTTCCACGGCTACTACGGCGGCTGCTCGGCTCCGCGAGGCGGCGGAATATCCTCCTCCAACACCCGGCGCTAGCGCTCCATCTCCCCACCAGGAAGATGCTCCTCGCCTGTGGCGAGCTTCGACGACGCCTCCTCGCCATCGTCGTTGACGACCACCGATCGTCATCATCACCATCACAGGCATCATGGCCCCCCACCATCCATCGCTGGCCACATGCATCGGTGGCAACAGGCAAGGGTTGTCCCTGCCGCACTGGCCAGATTGTGTGCCGGTGACGCAGTGCAG]

[+] EMBL CB965891             [TCCTGTGGCTCGCCGTGCTCACCTTCGCCTTCCACGGCTACTACGGCGGCTGCTCGGCTCCGCGAGGCGGCGGAATATCCTCCTCCAACACCCGGCGCTAGCGCTCCATCTCCCCACCAGGAAGATGCTCCTCGCCTGTGGCGAGCTTCGACGACGCCTCCTCGCCATCGTCGTTGACGACCACCGATCGTCATCATCACCATCACAGGCATCATGGCCCCCCACCATCCATCGCTGGCCACATGCATCGGTGGCAACAGGCAAGGGTTGTCCCTGCCGCACTGGCCAGATTGTGTGCCGGTGACGCAGTGCAG]




>consensus_10480#1
TCCTGTGGCTCGCCGTGCTCACCTTCGCCTTCCACGGCTACTACGGCGGCTGCTCGGCTC
CGCGAGGCGGCGGAATATCCTCCTCCAACACCCGGCGCTAGCGCTCCATCTCCCCACCAG
GAAGATGCTCCTCGCCTGTGGCGAGCTTCGACGACGCCTCCTCGCCATCGTCGTTGACGA
CCACCGATCGTCATCATCACCATCACAGGCATCATGGCCCCCCACCATCCATCGCTGGCC
ACATGCATCGGTGGCAACAGGCAAGGGTTGTCCCTGCCGCACTGGCCAGATTGTGTGCCG
GTGACGCAGTGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10480#0      CGCGCGCGCGCGCGGCGCGGGTGGTTTACGCAAGCTGAGCTGCCGCCGCGCGGCTTGCTA 60
consensus_10480#1      ------------------------------------------------------------
                                                                                   

consensus_10480#0      GTTAGCGTCAAATCGATCGGTTCGAGCCCTGCAATAGGAGTCCCACGCAAGCAACTCCTT 120
consensus_10480#1      ------------------------------------------------------------
                                                                                   

consensus_10480#0      CCTCCTCTTAACCACGCCCTCTCTCACCGTCGTCTTCCTCAATTCCCTCTACCCCTCACC 180
consensus_10480#1      ------------------------------------------------------------
                                                                                   

consensus_10480#0      GCCCGCACGCGCGCGCTGCCTAGCTAACACAAACCGCCATTGCTTCCCCTCCTCCTCCTT 240
consensus_10480#1      ------------------------------------------------------------
                                                                                   

consensus_10480#0      GCCGCCGTGCTTAGCTTGCTGTTTGTAGCTTGTTGGCTAGAGAGGTCGTCGTACGCCGGT 300
consensus_10480#1      ------------------------------------------------------------
                                                                                   

consensus_10480#0      GGCTGGCGATCGCCGGCCGGCCGGTGGTCCATGACTAACGGTGCCGCGAGCTGCCAGCCT 360
consensus_10480#1      ------------------------------------------------------------
                                                                                   

consensus_10480#0      GCAGCGCGGTGGACATGAGCCGGCGACTCGGCGCCGCGGCTGCGTCCTCCTCCTGTGGCT 420
consensus_10480#1      --------------------------------------------------TCCTGTGGCT 10
                                                                         **********

consensus_10480#0      CGCCGTGCTCACCTTCGCCTTCCACGGCTACTACGGCGGCCGCCTCGGCTCCGCGAGGCG 480
consensus_10480#1      CGCCGTGCTCACCTTCGCCTTCCACGGCTACTACGGCGGCTGC-TCGGCTCCGCGAGGCG 69
                       **************************************** ** ****************

consensus_10480#0      GCGGAATATCCTCCTCCAACACCCGGCGCTAGCGCTCCATCTCCCCACCAGGAAGATGCT 540
consensus_10480#1      GCGGAATATCCTCCTCCAACACCCGGCGCTAGCGCTCCATCTCCCCACCAGGAAGATGCT 129
                       ************************************************************

consensus_10480#0      CCTCGCC-GTGGCGAGCTTCGACGACGCCTCCTCGCCATCGTCGTTGACGACCACCGATC 599
consensus_10480#1      CCTCGCCTGTGGCGAGCTTCGACGACGCCTCCTCGCCATCGTCGTTGACGACCACCGATC 189
                       ******* ****************************************************

consensus_10480#0      GTCATCATCACCATCACAGGCATCATGGCCACC-ACCATC-ATCGC-GGCCATG---ATC 653
consensus_10480#1      GTCATCATCACCATCACAGGCATCATGGCCCCCCACCATCCATCGCTGGCCACATGCATC 249
                       ****************************** ** ****** ***** *****     ***

consensus_10480#0      GGTGG-AACAGGAAGGG--TGTCCCGCCGACGGCAGCTGGGCCGGGCGAGGAGGTCGACC 710
consensus_10480#1      GGTGGCAACAGGCAAGGGTTGTCCCTGCCGCACTGGCCAGATTGTGTGCCGGTGACGCAG 309
                       ***** ****** * **  ******  *  *    **  *   * * *  *  * **   

consensus_10480#0      CGCGGTTCGGCGTGCAGAAGAGGCTGGTCCCGACGGGCCCCAACCCCCTGCACCATTGAT 770
consensus_10480#1      TGCAG------------------------------------------------------- 314
                        ** *                                                       

consensus_10480#0      GCCGGCGGCTCGCCATTGATGGGTGCTCGAGTTTTTCTGCGGTGAGTCACGCGCACATAT 830
consensus_10480#1      ------------------------------------------------------------
                                                                                   

consensus_10480#0      ACACTACTACACCGTTCTTGTTGTGTTCATCGATCGACCAAAGGCTAGCTAGCTAGCTAG 890
consensus_10480#1      ------------------------------------------------------------
                                                                                   

consensus_10480#0      CACAGTAATATTGATTCCAATTCCAACCTGTGGATGAATTCAAGAAAGCATTGCCGATGT 950
consensus_10480#1      ------------------------------------------------------------
                                                                                   

consensus_10480#0      GTGTGTGCTCTTGCATGTATGTACCACGATCATATCAGAAAGCTTCAAAACAAGAGGAGA 1010
consensus_10480#1      ------------------------------------------------------------
                                                                                   

consensus_10480#0      AAAAGAAA 1018
consensus_10480#1      --------