cluster # 10485

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Oryza sativa
cluster # 10485 cluster # 10485 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10485#0 length = 807 sequences # 6

consensus_10485#1 length = 598 sequences # 1

consensusID : consensus_10485#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 807
fasta sequence

                              [AAAGCTACACAGGTAGAATCATCGACCGTAAGTAAGTACTACTCCTACGTACATTAAGTGTGAGCTTGATTAACTATGGAGGTATCCAAGCTGGCCATTGCTTTGGCCATGGTAGCCGCCATGGCACTCCCCTCCCAAGCTCAAAACTCCCCGCAGGACTACGTGAGGCTCCACAACGCCGCCCGCGCCGCCGTCGGCGTGGGTCCGGTGACCTGGGACACGAGCGTGCAGGCGTTCGCGGAGAACTACGCCAGCCAGAGAAGCGGCGACTGCAGCCTGATCCACTCCAGCAACCGGAACAACCTTGGCGAGAACCTCTTCTGGGGTTCGGCCGGCGGGGACTGGACGGCGGCGAGCGCGGTGCAGTCGTGGGTGGGCGAGAAGAGCGACTACGACTACGCCTCCAACAGCTGCGCGCAGGGGAAGGTGTGCGGGCACTACACGCAGGTGGTGTGGCGCGCGTCGACCAGCATCGGCTGCGCCCGCGTCGTCTGCAGCAACGGCCGCGGCGTCTTCATCACATGCAACTATAAGCCGGCCGGCAACTTCGTCGGACAGAGGCCTTACTAAGTTATTTATACACACGGGCGTACGTACTGGCTAGTACTACGTATAGTAGTGAATAAATAAAGACGTGAAAATGTAAACAGGTCAGTGTCTGATCCACGCCTTCACGGTCCATACCGAGGATTCTATAAAGCGTCATGTCGTACAAGTAAAAATAAATAGTACTCCCTCTGTTTCTTTCTGTTTCAAGTTATAACACCTATTAACTTTGGTTAAAGTTAAATTGCTTTAAATTTAACT]

[+] EMBL CF335554             [AAAGCTACACAGGTAGAATCATCGACCGTAAGTAAGTACTACTCCTACGTACATTAAGTGTGAGCTTGATTAACTATGGAGGTATCCAAGCTGGCCATTGCTTTGGCCATGGTAGCCGCCATGGCACTCCCCTCCCAAGCTCAAAACTCCCCGCAGGACTACGTGAGGCTCCACAACGCCGCCCGCGCCGCCGTCGGCGTGGGTCCGGTGACCTGGGACACGAGCGTGCAGGCGTTCGCGGAGAACTACGCCAGCCAGAGAAGCGGCGACTGCAGCCTGATCCACTCCAGCAACCGGAACAACCTTGGCGAGAACCTCTTCTGGGGTTCGGCCGGCGGGGACTGGACGGCGGCGAGCGCGGTGCAGTCGTGGGTGGGCGAGAAGAGCGACTACGACTACGCCTCCAACAGCTGCGCGCAGGGGAAGGTGTGCGGG                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AK107926             [   GCTACACAGGTAGAATCATCGACCGTAAGTAAGTACTACTCCTACGTACATTAAGTGTGAGCTTGATTAACTATGGAGGTATCCAAGCTGGCCATTGCTTTGGCCATGGTAGCCGCCATGGCACTCCCCTCCCAAGCTCAAAACTCCCCGCAGGACTACGTGAGGCTCCACAACGCCGCCCGCGCCGCCGTCGGCGTGGGTCCGGTGACCTGGGACACGAGCGTGCAGGCGTTCGCGGAGAACTACGCCAGCCAGAGAAGCGGCGACTGCAGCCTGATCCACTCCAGCAACTGGAACAACCTTGGCGAGAACCTCTTCTGGGGTTCGGCCGGCGGGGACTGGACGGCGGCGAGCGCGGTGCAGTCGTGGGTGGGCGAGAAGAGCGACTACGACTACGCCTCCAACAGCTGCGCGCAGGGGAAGGTGTGCGGGCACTACACGCAGGTGGTGTGGCGCGCGTCGACCAGCATCGGCTGCGCCCGCGTCGTCTGCAGCAACGGCCGCGGCGTCTTCATCACATGCAACTATAAGCCGGCCGGCAACTTCGTCGGACAGAGGCCTTACTAAGTTATTTATACACACGGGCGTACGTACTGGCTAGTACTACGTATAGTAGTGAATAAATAAAGACGTGAAAATGTAAACAGGTCAGTGTCTGATCCACGCCTTCACGGTCCATACCGAGGATTCTATAAAGCGTCATGTCGTACAAGTAAAAATAAATAGTACTCCCTCTGTTTCTTTCTGTTTCAGGTTATAACACCTATTAACTTTGGTTAAAGTTAAATTGCTTTAAATTTAACT]
[+] EMBL BF889437             [                                    TACTACTCCTACGTACATTAAGTGTGAGCTTGATTAACTATGGAGGTATCCAAGCTGGCCATTGCTTTGGCCATGGTAGCCGCCATGGCACTCCCCTCCCAAGCTCAAAACTCCCCGCAGGACTACGTGAGGCTCCACAACGCCGCCCGCGCCGCCGTCGGCGTGGGTCCGGTGACCTGGGACACGAGCGTGCAGGCGTTCGCGGAGAACTACGCCAGCCAGAGAAGCGGCGACTGCAGCCTGATCCACTCCAGCAACCGGAACAACCTTGGCGAGAACCTCTTCTGGGGTTCGGCCGGCGGGGACTGGACGGCGGCGAGCGCGGTGCAGTCGTGGGTGGGCGAGAAGAGCGACTACGACTACGCCTCCAACAGCTGCGCGCAGGGGAAGGTGTGCGGGCACTACACGCAGGTGGTGTGGCGCGCGTCGACCAGCATCGGCTGCGCCCGCGTCGTCTGCAGCAACGGCCGCGGCGTCTTCATCACATGCAACTATAAGCCGGCCGGCAACTTCGTCGGACAGAGGCCTTACTAAGTTATTTATACACACGGGCGTACGTACTGGCTAGTACTACGTATAGTAGTGAATAAATAAAGACGTGAAAATGTAAACAGGTCAGTGTCTGATCCACGCCTTCACGGTCCATACCGAGGATTCTATAAAGCGTCATGTCGTACAAGTAAAAAaa                                                                                   ]
[+] EMBL CF326127             [                                        gCTCCTACGTACATTAAGTGTGAGCTTGATTAACTATGGAGGTATCCAAGCTGGCCATTGCTTTGGCCATGGTAGCCGCCATGGCACTCCCCTCCCAAGCTCAAAACTCCCCGCAGGACTACGTGAGGCTCCACAACGCCTCCCGCGCCGCCGTCGGCGTGGGTCCGGTGACCTGGGACACGAGCGTGCAGGCGTTCGCGGAGAACTACGCCAGCCAGAGAAGCGGCGACTGCAGCCTGATCCACTCCAGCAACCGGAACAACCTTGGCGAGAACCTCTTCTGGGGTTCGGCCGGCGGGGACTGGACGGCGGCGAGCGCGGTGCAGTCGTGGGTGGGCGAGAAGAGCGACTACGACTACGCCTCCAACAGCTGCGCGCAGGGGAAGGTGTGCGGGCACTACACGCAGGTGGTGTGGCGCGCGTCGACCAGCATCGGCTGCGCCCGCGTCGTCTGCAGCAACGGCCGCGGCGTCTTCATCACATGCAACTATAAGCCGGCCGGCAACTTCGTCGGACAGAGGCCTTACTAAGTTA                                                                                                                                                                                                                                         ]
[+] EMBL AT003459             [                                                                                                         GCCATGGTAGCCGCCATGGCACTCCCCTCCCAAGCTCAAAACTCCCCGCAGGACTACGTGAGGTTCCACAACGCCGCCCGCGCCGCCGTCGGCGTGGGTCCGGTGACCTGGGACACGAGCGTGCAGGCGTTCGCGGAGAACTACGCCAGCCAGAGAAGCGGCGACTGCAGCCTGATCCACTCCAGCAACCGGAACAACCTTGGCGAGAACCTCTTCTGGGGTTCGGCCGGCGGGGACTGGACGGCGGCGAGCGCGGTGCAGTCGTGGGTGGGCGAGAAGAGCGACTACGACTACGCCTCCAACAGCTGCGCGCAGGGGAAGGTGTGCGGGCACTACACGCAGGTGGTGTGGCGCGCGTCGACCAGCATCGGCTGCGCCCGCGTCGTCTGCAGCAACGGCCGCGGCGTCTTCATCACATGCAACTATAAGCCGGCCGGCAACTTCGTCGGACAGAGGCCTTACTAAGTTATTTATACACACGGGCGTACGTACTGGCTAGTACTACGTATAGTAGTGAATAAATAAAGACGTGAAAATGTAAACAGGTCAGTGTCTGATCCACGCCTTCACGGTCCATACCGAGGATTCTATAAAGCGTCATGTCGTACAAGTAAAAATAAATAGTACTCCCTCTGTTTCTTTCaaaaaaaa                                                   ]
[-] EMBL CF335553             [                                                                                                                                                                                                                                                                                                                                              GCGGGGACTGGACGGCGGCGAGCGCGGTGCAGTCGTGGGTGGGCGAGAAGAGCGACTACGACTACGCCTCCAACAGCTGCGCGCAGGGGAAGGTGTGCGGGCACTACACGCAGGTGGTGTGGCGCGCGTCGACCAGCATCGGCTGCGCCCGCGTCGTCTGCAGCAACGGCCGCGGCGTTTTCATCACATGCAACTATAAGCCGGCCGGCAACTTCGTCGGACAGAGGCCTTACTAAGTTATTTATACACACGGGCGTACGTACTGGCTAGTACTACGTATAGTAGTGAATAAATAAAGACGTGAAAATGTAAACAGGTCAGTGTTTGATCCACGCCTTCACGGTCCATACCGAGGATTCTATAAAGCGTCATGTCGTACAAGTAAAAATAAATAGTACTCCCTCTGTTTCTTTCTGTTTCAAaaaa                                               ]




>consensus_10485#0
AAAGCTACACAGGTAGAATCATCGACCGTAAGTAAGTACTACTCCTACGTACATTAAGTG
TGAGCTTGATTAACTATGGAGGTATCCAAGCTGGCCATTGCTTTGGCCATGGTAGCCGCC
ATGGCACTCCCCTCCCAAGCTCAAAACTCCCCGCAGGACTACGTGAGGCTCCACAACGCC
GCCCGCGCCGCCGTCGGCGTGGGTCCGGTGACCTGGGACACGAGCGTGCAGGCGTTCGCG
GAGAACTACGCCAGCCAGAGAAGCGGCGACTGCAGCCTGATCCACTCCAGCAACCGGAAC
AACCTTGGCGAGAACCTCTTCTGGGGTTCGGCCGGCGGGGACTGGACGGCGGCGAGCGCG
GTGCAGTCGTGGGTGGGCGAGAAGAGCGACTACGACTACGCCTCCAACAGCTGCGCGCAG
GGGAAGGTGTGCGGGCACTACACGCAGGTGGTGTGGCGCGCGTCGACCAGCATCGGCTGC
GCCCGCGTCGTCTGCAGCAACGGCCGCGGCGTCTTCATCACATGCAACTATAAGCCGGCC
GGCAACTTCGTCGGACAGAGGCCTTACTAAGTTATTTATACACACGGGCGTACGTACTGG
CTAGTACTACGTATAGTAGTGAATAAATAAAGACGTGAAAATGTAAACAGGTCAGTGTCT
GATCCACGCCTTCACGGTCCATACCGAGGATTCTATAAAGCGTCATGTCGTACAAGTAAA
AATAAATAGTACTCCCTCTGTTTCTTTCTGTTTCAAGTTATAACACCTATTAACTTTGGT
TAAAGTTAAATTGCTTTAAATTTAACT

consensusID : consensus_10485#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 598
fasta sequence

                              [AATTCGGCACGAGCGACCGTAAGTAAGTACTACTCCTACGTACATTAAGTGTGAGCTTGATTAACTATGGAGGTATCCAAGCTGGCCATTGCTTTGGCCATGGTAGCCGCCATGGCACTCCCCTCCCAAGCTCAAAACTCCCCGCAGGACTACGTGAGGCTCCACAACGCCGCCCGCGCCGCCGTCGGCGTGGGTCCGGTGACCTGGGACACGAGCGTGCAGGCGTTCGCGGAGAACTACGCCAGCCAGAGAAGCGGCGACTGCAGCCTGATCCACTCCAGCAACCGGAACAACCTTGGCGAGAACCTCTTCTGGGGTTCGGCCGGCGGGGACTGGACGGCGGCGAGCGCGGTGCAGTCGTGGGTGGGCGAGAAGAGCGACTACGACTACGCCTCCNACAGCTGCGCGCAGGGGAAGGTGTGCGGGCACTACACCGCAGTGCTGTGGCGCGCGTCNACCAGCATCGGCTGGACCCGCGTCGTCTGCAGCAACGGACGCGCGGCTTCATCCATGGAATATTAGCCGGCGGCGACTTCGTCGAACAAGGACTTACTAGCCATTTAACACCCGGCGGTACGTATGGCAAGGACCACGATAG]

[+] EMBL CA758747             [AATTCGGCACGAGCGACCGTAAGTAAGTACTACTCCTACGTACATTAAGTGTGAGCTTGATTAACTATGGAGGTATCCAAGCTGGCCATTGCTTTGGCCATGGTAGCCGCCATGGCACTCCCCTCCCAAGCTCAAAACTCCCCGCAGGACTACGTGAGGCTCCACAACGCCGCCCGCGCCGCCGTCGGCGTGGGTCCGGTGACCTGGGACACGAGCGTGCAGGCGTTCGCGGAGAACTACGCCAGCCAGAGAAGCGGCGACTGCAGCCTGATCCACTCCAGCAACCGGAACAACCTTGGCGAGAACCTCTTCTGGGGTTCGGCCGGCGGGGACTGGACGGCGGCGAGCGCGGTGCAGTCGTGGGTGGGCGAGAAGAGCGACTACGACTACGCCTCCNACAGCTGCGCGCAGGGGAAGGTGTGCGGGCACTACACCGCAGTGCTGTGGCGCGCGTCNACCAGCATCGGCTGGACCCGCGTCGTCTGCAGCAACGGACGCGCGGCTTCATCCATGGAATATTAGCCGGCGGCGACTTCGTCGAACAAGGACTTACTAGCCATTTAACACCCGGCGGTACGTATGGCAAGGACCACGATAG]




>consensus_10485#1
AATTCGGCACGAGCGACCGTAAGTAAGTACTACTCCTACGTACATTAAGTGTGAGCTTGA
TTAACTATGGAGGTATCCAAGCTGGCCATTGCTTTGGCCATGGTAGCCGCCATGGCACTC
CCCTCCCAAGCTCAAAACTCCCCGCAGGACTACGTGAGGCTCCACAACGCCGCCCGCGCC
GCCGTCGGCGTGGGTCCGGTGACCTGGGACACGAGCGTGCAGGCGTTCGCGGAGAACTAC
GCCAGCCAGAGAAGCGGCGACTGCAGCCTGATCCACTCCAGCAACCGGAACAACCTTGGC
GAGAACCTCTTCTGGGGTTCGGCCGGCGGGGACTGGACGGCGGCGAGCGCGGTGCAGTCG
TGGGTGGGCGAGAAGAGCGACTACGACTACGCCTCCNACAGCTGCGCGCAGGGGAAGGTG
TGCGGGCACTACACCGCAGTGCTGTGGCGCGCGTCNACCAGCATCGGCTGGACCCGCGTC
GTCTGCAGCAACGGACGCGCGGCTTCATCCATGGAATATTAGCCGGCGGCGACTTCGTCG
AACAAGGACTTACTAGCCATTTAACACCCGGCGGTACGTATGGCAAGGACCACGATAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10485#0      AAAGCTACACAGGTAGAATCATCGACCGTAAGTAAGTACTACTCCTACGTACATTAAGTG 60
consensus_10485#1      ---------AATTCGGCACGAGCGACCGTAAGTAAGTACTACTCCTACGTACATTAAGTG 51
                                 *    * *  * **************************************

consensus_10485#0      TGAGCTTGATTAACTATGGAGGTATCCAAGCTGGCCATTGCTTTGGCCATGGTAGCCGCC 120
consensus_10485#1      TGAGCTTGATTAACTATGGAGGTATCCAAGCTGGCCATTGCTTTGGCCATGGTAGCCGCC 111
                       ************************************************************

consensus_10485#0      ATGGCACTCCCCTCCCAAGCTCAAAACTCCCCGCAGGACTACGTGAGGCTCCACAACGCC 180
consensus_10485#1      ATGGCACTCCCCTCCCAAGCTCAAAACTCCCCGCAGGACTACGTGAGGCTCCACAACGCC 171
                       ************************************************************

consensus_10485#0      GCCCGCGCCGCCGTCGGCGTGGGTCCGGTGACCTGGGACACGAGCGTGCAGGCGTTCGCG 240
consensus_10485#1      GCCCGCGCCGCCGTCGGCGTGGGTCCGGTGACCTGGGACACGAGCGTGCAGGCGTTCGCG 231
                       ************************************************************

consensus_10485#0      GAGAACTACGCCAGCCAGAGAAGCGGCGACTGCAGCCTGATCCACTCCAGCAACCGGAAC 300
consensus_10485#1      GAGAACTACGCCAGCCAGAGAAGCGGCGACTGCAGCCTGATCCACTCCAGCAACCGGAAC 291
                       ************************************************************

consensus_10485#0      AACCTTGGCGAGAACCTCTTCTGGGGTTCGGCCGGCGGGGACTGGACGGCGGCGAGCGCG 360
consensus_10485#1      AACCTTGGCGAGAACCTCTTCTGGGGTTCGGCCGGCGGGGACTGGACGGCGGCGAGCGCG 351
                       ************************************************************

consensus_10485#0      GTGCAGTCGTGGGTGGGCGAGAAGAGCGACTACGACTACGCCTCCAACAGCTGCGCGCAG 420
consensus_10485#1      GTGCAGTCGTGGGTGGGCGAGAAGAGCGACTACGACTACGCCTCCNACAGCTGCGCGCAG 411
                       ********************************************* **************

consensus_10485#0      GGGAAGGTGTGCGGGCACTACACGCAGGTGGTGTGGCGCGCGTCGACCAGCATCGGCTGC 480
consensus_10485#1      GGGAAGGTGTGCGGGCACTACACCGCAGTGCTGTGGCGCGCGTCNACCAGCATCGGCTGG 471
                       ***********************    *** ************* ************** 

consensus_10485#0      GCCCGCGTCGTCTGCAGCAACGGCCGCGGCGTCTTCATCACATGCAACTATAAGCCGGCC 540
consensus_10485#1      ACCCGCGTCGTCTGCAGCAACGGACGCG-CGGCTTCATC-CATGGAA-TATTAGCCGGC- 527
                        ********************** **** ** ******* **** ** *** ******* 

consensus_10485#0      GGCAACTTCGTCGGACAGAGGCCTTACTAAGTTATTTATACACACGGGCGTACGTACTGG 600
consensus_10485#1      GGCGACTTCGTCGAACA-AGGACTTACTA-GCCATTTA-ACACCCGGCGGTACGTA-TGG 583
                       *** ********* *** *** ******* *  ***** **** ***  ******* ***

consensus_10485#0      CTAGTACTACGTATAGTAGTGAATAAATAAAGACGTGAAAATGTAAACAGGTCAGTGTCT 660
consensus_10485#1      CAAGGACCACG-ATAG-------------------------------------------- 598
                       * ** ** *** ****                                            

consensus_10485#0      GATCCACGCCTTCACGGTCCATACCGAGGATTCTATAAAGCGTCATGTCGTACAAGTAAA 720
consensus_10485#1      ------------------------------------------------------------
                                                                                   

consensus_10485#0      AATAAATAGTACTCCCTCTGTTTCTTTCTGTTTCAAGTTATAACACCTATTAACTTTGGT 780
consensus_10485#1      ------------------------------------------------------------
                                                                                   

consensus_10485#0      TAAAGTTAAATTGCTTTAAATTTAACT 807
consensus_10485#1      ---------------------------