These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10488#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 790 fasta sequence [TTTTTTTTTTTTTTTTTTCTCTGGCTGTAACCTTGAAGTAGTCAGTGTCCAAGGTGTCGGCA-CGATCTGACAAAATCCGTAAATCACAACGATCTATATCCTTGTTCACTCAGGAAAACCATCAACATTGACAAAAAAAAATGAAGGAAAAGAACTACAGTTTATTGGAAACGAAACAACACAGCAAAGCATCTCACTACTTGCAATTTAACGCAATAAAAATGAAAATGTTCATAGAGGTCATGCAAAGCACGATTCCTGAATCATCAAGTGAGGTCTGAAAAGGGATTGAATGCTTCTGAATTACTCCCTTCGTCCCACAAAAAATCAACCTACTATTGGAGGNGATATTTCCTAATACAACGAATCTGAACAGAAGGTTGCCTANA-TTCGTTATACTAGGGAAT-ATCA-CCT-CCAATACCAGGTTGGTTTTTTATGGGATGGAGGGAGTACTTGGCTCCAGGGGTGACTTCTACTTCTTCCGGAACAAGAAATGCGCAACCATCCACTCATCGCCATTGTTGTATCCAAAAAGCTCGGCGACTGAGATGAAGAACGTGCGCCAGTAAGCTATCCATTTGGTAGCTGATTCCTTCCCGTAAGTTTTCTCAAATATTGGCCTTATGGACGTGATGTTTTTGTCCATACGTTTCAGCCACTCCTCGCTAGTTCTGGCATAATGCGTGCCACTGACAAGCCAATGATTGGCAATAGATACATCGTCCTGAAAGTAAAGGAGGAGGTTTGCTGATGGCATTGTTCCTCCAGTGAAGAAATACCTTGTTATCCA] [-] EMBL AU173515 [TTTTTTTTTTTTTTTTTTCTCTGGCTGTAACCTTGAAGTAGTCAGTGTCCAAGGTGTCGGCACCGATCTGACAAAATCCGTAAATCACAACGATCTATATCCTTGTTCACTCAGGAAAACCATCAACATTGACAAAAAAAAATGAAGGAAAAGAACTACAGTTTATTGGAAACGAAACAACACAGCAAAGCATCTCACTACTTGCAATTTAACGCANTAAAAATGAAAATGTTCATAGAGGTCATGCAAAGCACGATTCCTGAATCATCAAGTGAGGTCTGAAAAGGGATTGAATGCTTCTNAATTACTCCCTTCGTCCCACAAAAAATCAACCTACTATTGGAGGNGATATTTCCTAATACAACGAATCTGAACAGAAGGTTGCCTAAATTTCGTTATACTAGGGAATNATCACCCTCCCAATACCcag ] [-] EMBL AU184579 [TTTTTTTTTTTTTTTTTTCTCTGGCTGAAACCTTGAAGTAGTCAGTGTCCAAGGTGTCGGCA CGATCTGACAAAATCCGTAAATCACAACGATCTATATCCTTGTTCACTCAGGAAAACCATCAACATTGACAAAAAAAAATGAAGGAAAANAACTACAGTTTATTGGAAACGAAACAACACAGCAAAGCATCTCACTACTTGCAATTTAACGCAATAAAAATGAAAATGTTCATAGAGGTCATGCAAAGCACGATTCCTGAATCATCAAGTGAGGTCTGAAAAGGGATTGAATGCTTCTGAATTACTCCCTTCGNCCCACAAAAAATCAACCTACTATTGGAGGNGATATTTCCTAATACAACGAATCTGAACANAAGGTTGCCTANA TTCGTTATACTAGGGAAT ATCA CCT CCAATACCAGGTTGGT ] [+] EMBL CB655534 [ gcaaagaTTCTCTTGCTGTAACCCTGAAGTAGTCAGTGTCCAAGGTGTCGGCA CGATCTGACAAAATCCGTAAATCACAACGATCTATATCCTTGTTCACTCAGGAAAACCATCAACATTGACAAAAAAAAATGAAGGAAAAGAACTACAGTTTATTGGAAACGAAACAACACAGCAAAGCATCTCACTACTTGCAATTTAACGCAATAAAAATGAAAATGTTCATAGAGGTCATGCAAAGCACGATTCCTGAATCATCAAGTGAGGTCTGAAAAGGGATTGAATGCTTCTGAATTACTCCCTTCGTCCCACAAAAAATCAACCTACTATTGGAGGTGATATTTCCTAATACAACGAATCTGAACAGAAGGTTGCCTAGA TTCGTTATACTAGGGAAT ATCA CCT CCAATACCAGGTTGGTTTTTTATGGGATGGAGGGAGTACTTGGCTCCAGGGGTGACTTCTACTTCTTCCGGAACAAGAAATGCGCAACCATCCACTCATCGCCATTGTTGTATCCAAAAAGCTCGGCGACTGAGATGAAGAACGTGCGCCAGTAAGCTATCCATTTGGTAGCTGATTCCTTCCCGTAAGTTTTCTCAAATATTGGCCTTATGGACGTGATGTTTTTGTCCATACGTTTCAGCCACTCCTCGCTAGTTCTGGCATAATGCGTGCCACTGACAAGCCAATGATTGGCAATAGATACATCGTCCTGAAAGTAAAGGAGGAGGTTTGCTGATGGCATTGTTCCTCCAGTGAAGAAATACCTTGTTATCCA] [+] EMBL CB636315 [ ACCCTGAAGTAGTCAGTGTCCAAGGTGTCGGCA CGATCTGACAAAATCCGTAAATCACAACGATCTATATCCTTGTTCACTCAGGAAAACCATCAACATTGACAAAAAAAAATGAAGGAAAAGAACTACAGTTTATTGGAAACGAAACAACACAGCAAAGCATCTCACTACTTGCAATTTAACGCAATAAAAATGAAAATGTTCATAGAGGTCATGCAAAGCACGATTCCTGAATCATCAAGTGAGGTCTGAAAAGGGATTGAATGCTTCTGAATTACTCCCTTCGTCCCACAAAAAATCAACCTACTATTGGAGGTGATATTTCCTAATACAACGAATCTGAACAGAAGGTTGCCTANA TTCGTTATACTAGGGAAT ATCA CCT CCAATACCAGGTTGGTTTTTTATGGGATGGAGGGAGTACTTGGCTCCAGGGGTGACTTCTACTTCTTCCGGAACAAGAAATGCGCAACCATCCACTCATCGCCATTGTTGTATCCAAAAAGCTCGGCGACTGAGATGAAGAACGTGCGCCAGTAAGC ] consensusID : consensus_10488#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTATATAGAAAGCAAGATCCCTACAAATTGAATGCAAAAAAATGAAATGTTCGTAGGGGTACATGGAAAGCAAAAATTCTTTTGCTGTAACCCTGAAGTAGTCAGTGTCCAAGGGGTCGGCACGATCTGACAAAATCCGTAAATCACAACGATCTATATCCTTGTTCACTCAGGAAAACCATCAACATTGACAAAAAAAAAATGAAGGAAAAGAACTACAGTTTATTGGAAACGAAACAACACAGCAAAGCATCTCACTACTTGCAATTTAACGCAATAAAAATGAAAATGTTCATAGAGGTCATGCAAAGCACGATTCCTGAATCATCAAGTGAGGTCTGAAAAGGGATTGAATGCTTCTGAATTACTCCCTTCGTCCCACAAAAAATCAACCTACTATTGGAGGGGATATTTCCTAATACAACGAATCTGAACAGAAGGTTGCCTAAATTCGTTATACTAGGGAATGTCACCTCTAATACCAAATTGGTTTTTTATGGGATGGAGGGAGTACTTGGGTCCAGGGGTGACTTCTACTTCTTCCGGAACAAGAATGCGCAACCATCCACTCATCGCCATTGTTGTATCCAAAAAGCTCGGCGACTGAGATGAAAAACGTGCGCCAGTAAGCTATCCATTTGGTAGCTGATTCCTTTCCGTAAGG] [+] EMBL CA759735 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTATATAGAAAGCAAGATCCCTACAAATTGAATGCAAAAAAATGAAATGTTCGTAGGGGTACATGGAAAGCAAAAATTCTTTTGCTGTAACCCTGAAGTAGTCAGTGTCCAAGGGGTCGGCACGATCTGACAAAATCCGTAAATCACAACGATCTATATCCTTGTTCACTCAGGAAAACCATCAACATTGACAAAAAAAAAATGAAGGAAAAGAACTACAGTTTATTGGAAACGAAACAACACAGCAAAGCATCTCACTACTTGCAATTTAACGCAATAAAAATGAAAATGTTCATAGAGGTCATGCAAAGCACGATTCCTGAATCATCAAGTGAGGTCTGAAAAGGGATTGAATGCTTCTGAATTACTCCCTTCGTCCCACAAAAAATCAACCTACTATTGGAGGGGATATTTCCTAATACAACGAATCTGAACAGAAGGTTGCCTAAATTCGTTATACTAGGGAATGTCACCTCTAATACCAAATTGGTTTTTTATGGGATGGAGGGAGTACTTGGGTCCAGGGGTGACTTCTACTTCTTCCGGAACAAGAATGCGCAACCATCCACTCATCGCCATTGTTGTATCCAAAAAGCTCGGCGACTGAGATGAAAAACGTGCGCCAGTAAGCTATCCATTTGGTAGCTGATTCCTTTCCGTAAGG] consensusID : consensus_10488#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 678 fasta sequence [ACCGGGGGGCTAATGCTATCCTTCCTTCCAAGTTCCAACTAAACAGAAGCGACGCAGCAAGGCACAGCTGGGCCGCCGACAATGGCGATGGCGGCGCGGGCGGCGTACCTGGCGGCGACGCGCGCGGCGCTGGCGGCGCTGTGAGCGCAACGCCCTCCCCGACGCGGTCACCCGGCGCCTGACGCGGCTGCTGCTCGCGCAGCGCCTCCGCCTCGGCTACCTCCCCTCCTCCTCCTCCTCCACGCCTGAATCATCAAGTGAGGTCTGAAAAGGGATTGAATGCTTCTGAATTACTCCCTTCGTCCCACAAAAAATCAACCTACTATTGGAGGTGATATTTCCTAATACAACGAATCTGAACAGAAGGTTGCCTAGATTCGTTATACTAGGGAATATCACCTCCAATACCAAGTTGGTTTTTTATGGGATGGAGGGAGTACTTGGCTCCAGGGGTGACTTCTACTTCTTCCGGAACAAGAAATGCGCAACCATCCACTCATCGCCATTGTTGTATCCAAAAAGCTCGGCGACTGAAATGAAGAACGTGCGCCAGTAAGCTATCCATTTGGTAGCTGATTCCTTCCCGTAAGTTTTCTCAAATATTGGCCTTATGGACGTGATGTTTTTGTCCATACGTTTCAGCCACTCCTCACTAGTTCTGGCATAATGCGTGCCACT] [+] EMBL CF326313 [ACCGGGGGGCTAATGCTATCCTTCCTTCCAAGTTCCAACTAAACAGAAGCGACGCAGCAAGGCACAGCTGGGCCGCCGACAATGGCGATGGCGGCGCGGGCGGCGTACCTGGCGG ] [+] EMBL CB655533 [ ATGCTATCCTTCCTTCCAAGTTCCAACTAAACAGAAGCGACGCAGCAAGGCACAGCTGGGCCGCCGACAATGGCGATGGCGGCGCGGGCGGCGTACCTGGCGGCGACGCGCGCGGCGCTGGCGGCGCTGTGAGCGCAACGCCCTCCCCGACGCGGTCACCCGGCGCCTGACGCGGCTGCTGCTCGCGCAGCGCCTCCGCCTCGGCTACCTCCCCTCCTCCTCCTCCTCCACGCCTGAATCATCAAGTGAGGTCTGAAAAGGGATTGAATGCTTCTGAATTACTCCCTTCGTCCCACAAAAAATCAACCTACTATTGGAGGTGATATTTCCTAATACAACGAATCTGAACAGAAGGTTGCCTAGATTCGTTATACTAGGGAATATCACCTCCAATACCAAGTTGGTTTTTTATGGGATGGAGGGAGTACTTGGCTCCAGGGGTGACTTCTACTTCTTCCGGAACAAGAAATGCGCAACCATCCACTCATCGCCATTGTTGTATCCAAAAAGCTCGGCGACTGAAATGAAGAACGTGCGCCAGTAAGCTATCCATTTGGTAGCTGATTCCTTCCCGTAAGTTTTCTCAAATATTGGCCTTATGGACGTGATGTTTTTGTCCATACGTTTCAGCCACTCCTCACTAGTTCTGGCATAATGCGTGCCACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10488#0 ------------------------------------------------------------ consensus_10488#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTATATAGAAAGCAAGATCCCTACAAATTGAATG 60 consensus_10488#2 ------------------------------------------------------------ consensus_10488#0 --------------------------TTTTTTTTTTTTTTTTT-TCTCTGGCTGTAACCT 33 consensus_10488#1 CAAAAAAATGAAATGTTCGTAGGGGTACATGGAAAGCAAAAAT-TCTTTTGCTGTAACCC 119 consensus_10488#2 --------------------------ACCGGGGGGCTAATGCTATCCTTCCTTCCAAGTT 34 * ** * * ** consensus_10488#0 TGAAGTAGTCAGTGTCCAAGGTGTC-GGCACGATCTGACAAAATCCGTAAATCACAACGA 92 consensus_10488#1 TGAAGTAGTCAGTGTCCAAGGGGTC-GGCACGATCTGACAAAATCCGTAAATCACAACGA 178 consensus_10488#2 CCAACTAAACAGAAGCGACGCAGCAAGGCACAGCTGGGCCG---CCGACAATGGCGATGG 91 ** ** *** * * * * ***** * * *** *** * * * consensus_10488#0 TCTATATCCTTGTTCACTCAGGAAAACCATCAACATTGACAAAAAAAAA-TGAAGGAAAA 151 consensus_10488#1 TCTATATCCTTGTTCACTCAGGAAAACCATCAACATTGACAAAAAAAAAATGAAGGAAAA 238 consensus_10488#2 CGGCGCGGGCGGCGTACCTGGCGGCGACGCGCGCGGCGCTGGCGGCGCTGTGAGCGCAAC 151 * ** * * * * *** * ** consensus_10488#0 GAACTACAGTTTATTGGAAACGAAACAACACAGCAAAGCATCTCACTACTTGCAATTTAA 211 consensus_10488#1 GAACTACAGTTTATTGGAAACGAAACAACACAGCAAAGCATCTCACTACTTGCAATTTAA 298 consensus_10488#2 GCCCTCCCC---------GACGCGGTCACCCGGCGCCTGACGCGGCTGCTGCTCGCGCAG 202 * ** * *** ** * ** * ** ** * consensus_10488#0 CGCAATAAAAATGAAAATGTTCATAGAGGTCATGCAAAGCACGATTCCTGAATCATCAAG 271 consensus_10488#1 CGCAATAAAAATGAAAATGTTCATAGAGGTCATGCAAAGCACGATTCCTGAATCATCAAG 358 consensus_10488#2 CGCCTCCGCCTCGGCTACCTCCCCT----CCTCCTCCTCCTCCACGCCTGAATCATCAAG 258 *** * * * * * * * * ************** consensus_10488#0 TGAGGTCTGAAAAGGGATTGAATGCTTCTGAATTACTCCCTTCGTCCCACAAAAAATCAA 331 consensus_10488#1 TGAGGTCTGAAAAGGGATTGAATGCTTCTGAATTACTCCCTTCGTCCCACAAAAAATCAA 418 consensus_10488#2 TGAGGTCTGAAAAGGGATTGAATGCTTCTGAATTACTCCCTTCGTCCCACAAAAAATCAA 318 ************************************************************ consensus_10488#0 CCTACTATTGGAGGNGATATTTCCTAATACAACGAATCTGAACAGAAGGTTGCCTANATT 391 consensus_10488#1 CCTACTATTGGAGGGGATATTTCCTAATACAACGAATCTGAACAGAAGGTTGCCTAAATT 478 consensus_10488#2 CCTACTATTGGAGGTGATATTTCCTAATACAACGAATCTGAACAGAAGGTTGCCTAGATT 378 ************** ***************************************** *** consensus_10488#0 CGTTATACTAGGGAATATCACCTCCAATACCAGGTTGGTTTTTTATGGGATGGAGGGAGT 451 consensus_10488#1 CGTTATACTAGGGAATGTCACCTCTAATACCAAATTGGTTTTTTATGGGATGGAGGGAGT 538 consensus_10488#2 CGTTATACTAGGGAATATCACCTCCAATACCAAGTTGGTTTTTTATGGGATGGAGGGAGT 438 **************** ******* ******* ************************** consensus_10488#0 ACTTGGCTCCAGGGGTGACTTCTACTTCTTCCGGAACAAGAAATGCGCAACCATCCACTC 511 consensus_10488#1 ACTTGGGTCCAGGGGTGACTTCTACTTCTTCCGGAACAAGAA-TGCGCAACCATCCACTC 597 consensus_10488#2 ACTTGGCTCCAGGGGTGACTTCTACTTCTTCCGGAACAAGAAATGCGCAACCATCCACTC 498 ****** *********************************** ***************** consensus_10488#0 ATCGCCATTGTTGTATCCAAAAAGCTCGGCGACTGAGATGAAGAACGTGCGCCAGTAAGC 571 consensus_10488#1 ATCGCCATTGTTGTATCCAAAAAGCTCGGCGACTGAGATGAAAAACGTGCGCCAGTAAGC 657 consensus_10488#2 ATCGCCATTGTTGTATCCAAAAAGCTCGGCGACTGAAATGAAGAACGTGCGCCAGTAAGC 558 ************************************ ***** ***************** consensus_10488#0 TATCCATTTGGTAGCTGATTCCTTCCCGTAAGTTTTCTCAAATATTGGCCTTATGGACGT 631 consensus_10488#1 TATCCATTTGGTAGCTGATTCCTTTCCGTAAGG--------------------------- 690 consensus_10488#2 TATCCATTTGGTAGCTGATTCCTTCCCGTAAGTTTTCTCAAATATTGGCCTTATGGACGT 618 ************************ ******* consensus_10488#0 GATGTTTTTGTCCATACGTTTCAGCCACTCCTCGCTAGTTCTGGCATAATGCGTGCCACT 691 consensus_10488#1 ------------------------------------------------------------ consensus_10488#2 GATGTTTTTGTCCATACGTTTCAGCCACTCCTCACTAGTTCTGGCATAATGCGTGCCACT 678 consensus_10488#0 GACAAGCCAATGATTGGCAATAGATACATCGTCCTGAAAGTAAAGGAGGAGGTTTGCTGA 751 consensus_10488#1 ------------------------------------------------------------ consensus_10488#2 ------------------------------------------------------------ consensus_10488#0 TGGCATTGTTCCTCCAGTGAAGAAATACCTTGTTATCCA 790 consensus_10488#1 --------------------------------------- consensus_10488#2 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||