cluster # 10489

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10489 cluster # 10489 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10489#0 length = 610 sequences # 1

consensus_10489#1 length = 486 sequences # 5
consensus_10489#2 length = 396 sequences # 1

consensusID : consensus_10489#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 610
fasta sequence

                              [AACATTAACCCCAATCCTATCCTGCCAATAAAGCCCTTCCTTTCTTCCTCGTCTCCAGCGGCCGCTTCCTCGACCGTACCCTCCTCAGGATCATGGAGATGAAGAAGATTGCCTGCGCCGTCCTTGTCGCTGCCTCGGCCACCGTGGCCCTCGCCGTCGAGGCGCCCGCCCCTGCCCCCACCAGCGCCGCCGCCACCTCGGCCGCCTTCCCGGCGGTCGGCGCGGTGATCGGCGCCTCCATGCTGTCCTTCTTCGCCTACTACCTACAGTAAGGAAGGGAGGAATGATGAAGGTGTTGCGTGAGTGTGGGTGTGGAGGGGAGGAGAGNNNNTTTTGGTTTGTNTTTGTTGGTTATTGTTTTGTGGTTATGTGTGTTTTTGGGTGGGGGGTGTGGGGGGTGGATGGTTGGATGGTTTTTGGTTGGGTGGGGTTTGGTTGGGGTGGTAGTTTGTTTTGTTGTTTAGGGAGAGGAGGAGATGAGAGAAAAGGGTAAGTGGGAAAAAAAGTGAGTGAAGTGTGGAGGTAGGAAGAAAAGAAGGTAGTGGAAAAAAAATAAGTTAAGTATATTAGACTATATTGATTATGAGAGTACTCCCAAACCGAGCCAAGG]

[+] EMBL CA755470             [AACATTAACCCCAATCCTATCCTGCCAATAAAGCCCTTCCTTTCTTCCTCGTCTCCAGCGGCCGCTTCCTCGACCGTACCCTCCTCAGGATCATGGAGATGAAGAAGATTGCCTGCGCCGTCCTTGTCGCTGCCTCGGCCACCGTGGCCCTCGCCGTCGAGGCGCCCGCCCCTGCCCCCACCAGCGCCGCCGCCACCTCGGCCGCCTTCCCGGCGGTCGGCGCGGTGATCGGCGCCTCCATGCTGTCCTTCTTCGCCTACTACCTACAGTAAGGAAGGGAGGAATGATGAAGGTGTTGCGTGAGTGTGGGTGTGGAGGGGAGGAGAGNNNNTTTTGGTTTGTNTTTGTTGGTTATTGTTTTGTGGTTATGTGTGTTTTTGGGTGGGGGGTGTGGGGGGTGGATGGTTGGATGGTTTTTGGTTGGGTGGGGTTTGGTTGGGGTGGTAGTTTGTTTTGTTGTTTAGGGAGAGGAGGAGATGAGAGAAAAGGGTAAGTGGGAAAAAAAGTGAGTGAAGTGTGGAGGTAGGAAGAAAAGAAGGTAGTGGAAAAAAAATAAGTTAAGTATATTAGACTATATTGATTATGAGAGTACTCCCAAACCGAGCCAAGG]




>consensus_10489#0
AACATTAACCCCAATCCTATCCTGCCAATAAAGCCCTTCCTTTCTTCCTCGTCTCCAGCG
GCCGCTTCCTCGACCGTACCCTCCTCAGGATCATGGAGATGAAGAAGATTGCCTGCGCCG
TCCTTGTCGCTGCCTCGGCCACCGTGGCCCTCGCCGTCGAGGCGCCCGCCCCTGCCCCCA
CCAGCGCCGCCGCCACCTCGGCCGCCTTCCCGGCGGTCGGCGCGGTGATCGGCGCCTCCA
TGCTGTCCTTCTTCGCCTACTACCTACAGTAAGGAAGGGAGGAATGATGAAGGTGTTGCG
TGAGTGTGGGTGTGGAGGGGAGGAGAGNNNNTTTTGGTTTGTNTTTGTTGGTTATTGTTT
TGTGGTTATGTGTGTTTTTGGGTGGGGGGTGTGGGGGGTGGATGGTTGGATGGTTTTTGG
TTGGGTGGGGTTTGGTTGGGGTGGTAGTTTGTTTTGTTGTTTAGGGAGAGGAGGAGATGA
GAGAAAAGGGTAAGTGGGAAAAAAAGTGAGTGAAGTGTGGAGGTAGGAAGAAAAGAAGGT
AGTGGAAAAAAAATAAGTTAAGTATATTAGACTATATTGATTATGAGAGTACTCCCAAAC
CGAGCCAAGG

consensusID : consensus_10489#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 486
fasta sequence

                              [GCCGTCCTTTGTCGCTGCCTCGGC-AACCGTGGCCCTTCGCCGTCAAGGCGCCCGCCCCTGCCCCCCACNAGCGCCGCCG-C-AACCTCGGGCCCCTT-CCCGGC-GGTCGGCGCGGTGATCGGCGCCTCCATGCTGTCCTTCTTCGCCTACTACCTACAGTAAGGAAGGGAGGAATGATGAAGGTGTTGCGTGAGTGTGGGTGTGGAGGGGAGGAGAGGACATTTGGTTTGATATGTGTTCGTTATCGTTCATGTTATAATTAAGTGTCTAAATGTGGTTTTTGTTTGGATTTGATTGACAATGTTGATCCATTAGTCCATTCATTTAATTTGCTCGCCTTTTCTTCCCCTCGTGTGTTCATTTGCTAATTACATTTGTAAAGAGGGGAAAATGAGGTGGCATTACTATTATTTTTTATAATATGATAATTGGATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL AU064073             [GCCGTCCTTTGTCGCTGCCTCGGCNAACCGTGGCCC TCGCCGTCGAGGCGCCCGCCCCTGCCCCCCACCAGCGCCGCCGCC ACCCTCGGCCCCCTTCCCCGGC GGTCGNCGCGGTGATCGGCACCTCCATGCTGTCCTTCTTCGCCTACTACCTACAGTAAGGAAGGGAGGAATGATGAAGGTGTTGCGTGAGTGTGGGTGTGGAGGGGAGGAGAGGACATTTGGTTTGATATGTGTTCGTTATCGTTCATGTTATAATTAAGTGTCTAAATGTGGTTTTTGTTTGGATTTGATTGACAATGTTGAACCATTAGTCCANTCATTTAATTTGCTCGCCTTTTCTTCCCCTCGTGTGTTNATTTGCTAATTACATTTGTAAAGAGGGGAAAATGAGGTGGCATTACTATTATTTTTTATAATATGA                                                                ]
[-] EMBL AU065070             [ CCGTCC TTGTCGCTGCCTGGGC AACCGTGGCCCTTCGCCGTCAAGGCGCCCGCCCCTGCCCCCCACNAGCGCCGCCG C AACCTCGGGCCCCTT CCCGGC GGTCGGCGCGGTGATCGGCGCCTCCATGCTGTCCTTCCTCGCCTACTACCTACAGTAAGGAAGGGAGGAATGATGAAGGTGTTGCGTGAGTGTGGGTGTGGAGGGGAGGAGAGGACATTTGGTTTGATATGTGTTCGTTATCGTTCATGTTATAATTAAGTGTCTAAATGTGGTTTTTGTTTGGATTTGATTGACAATGTTGATCCATTAGTCCATTCATTTAATTTGCTCGCCTTTTCTTCCCCTCGTGTGTTCATTTGCTAATTACATTTGTAAAGAGGGGAAAATGAGGTGGCATTACTATTATTTTTTATAATATGA                                                                ]
[-] EMBL AU064857             [                     GGC CACCGTGGCCCTCNCCCGTCAAGGCGCCGGNCCTTGCCCCCAACAAGCGCCGCCG CAAACCTCGGGCCCCTT CCCGGCGGGTCGGCCCNGTGANCGGCGCCTCCATGCTGTCCCTCCTCGCCTACTACCTACAGTAAGGAAGGGAGGAATGATGAAGGTGTTGCGTGAGTGTGGGTGTGGAGGGGAGNAGAGGACATTTGGTTTGATATGTGTTCGTTATCGTTCATGTTATAATTAAGTGTCTAAATGTGGTTTTTGTTTGGATTTGATTGACAATGTTGATCCATTAGTCCATTCATTTAATTTGCTCGCCTTTTCTTCCCCTCGTGTGTTCATTTGCTAATTACATTTGTAAAGAGGGGAAAATGAGGTGGNATTACTATTATTTTTTATAATATGA                                                                ]
[-] EMBL AU064823             [                                                                                                                                         TCCTTCTTCGCCTACTACCTACAGTAAGNAAGGTAGGAATGATGAAGGTGTTGCGTGAGTGTGGGTGTGGAGNGGAGGAGAGGACATTTGGTTTGATATGTGCTCGTTATCGTTCATGTTATAATTAAGTGTCTAAATGTGGTTTNTGTTTGGATTTGATTGACAATGTTGATCCATTAGTCCATTCATTTAATTTGCTCGCCTTTTCTTCCCCTCGTGTGTTCATTTGCTAATTACATTTGTAAAGAGGGGAAAATGAGGTGGCATTACTATTATTTTTTATAATATGA                                                                ]
[+] EMBL AU197286             [                                                                                                                                                                                                                                                                     TTAAGTGTCTAAATGTGGTTTTTGTTTGGATTTGATTGACAATGTTGATCCATTAGTCCATTCATTTAATTTGCTCGCCTTTNCTTCCCCTCGTGTGTTCATTTGCTAATTACATTTGTAAAGAGGGGAAAATGAGGTGGCATTACTATTATTTTTAATAATATGATAATTGGATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_10489#1
GCCGTCCTTTGTCGCTGCCTCGGCAACCGTGGCCCTTCGCCGTCAAGGCGCCCGCCCCTG
CCCCCCACNAGCGCCGCCGCAACCTCGGGCCCCTTCCCGGCGGTCGGCGCGGTGATCGGC
GCCTCCATGCTGTCCTTCTTCGCCTACTACCTACAGTAAGGAAGGGAGGAATGATGAAGG
TGTTGCGTGAGTGTGGGTGTGGAGGGGAGGAGAGGACATTTGGTTTGATATGTGTTCGTT
ATCGTTCATGTTATAATTAAGTGTCTAAATGTGGTTTTTGTTTGGATTTGATTGACAATG
TTGATCCATTAGTCCATTCATTTAATTTGCTCGCCTTTTCTTCCCCTCGTGTGTTCATTT
GCTAATTACATTTGTAAAGAGGGGAAAATGAGGTGGCATTACTATTATTTTTTATAATAT
GATAATTGGATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA

consensusID : consensus_10489#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence

                              [CCACCCTCGGGCCCCTTCCCCGGCGGNCGGCCCGGTGATCGGCCCCTCCATGCTGTCCTTCCTCGCCTACTACCTACAGTAAGGAAGGGAGGAATGATGAAGGTGTTNCGTGAGTGTGGGTGTGGAGGGGAGGAGAGGACATTTGGTTTGATATGTGNNCGTTATCGGTCATGTTATAATTAAGTGTCNAAATGTGGTTTTTGTTTGGATTTGATTGACAATGNTGANCCATTAGNCCANTCATTTAATTTGCTCGCCTTNTNANCCCCTCGTGTGNTNATTTGCNAATTACATTTGTAAAGAGGGGAAAATGAGGTGGCATTACTATTATTTTTTATAATATGATAATTGGATATTAATCTGTGTTCNAAAAATNATAGTAATGCCACCTNANTT]

[-] EMBL AU069826             [CCACCCTCGGGCCCCTTCCCCGGCGGNCGGCCCGGTGATCGGCCCCTCCATGCTGTCCTTCCTCGCCTACTACCTACAGTAAGGAAGGGAGGAATGATGAAGGTGTTNCGTGAGTGTGGGTGTGGAGGGGAGGAGAGGACATTTGGTTTGATATGTGNNCGTTATCGGTCATGTTATAATTAAGTGTCNAAATGTGGTTTTTGTTTGGATTTGATTGACAATGNTGANCCATTAGNCCANTCATTTAATTTGCTCGCCTTNTNANCCCCTCGTGTGNTNATTTGCNAATTACATTTGTAAAGAGGGGAAAATGAGGTGGCATTACTATTATTTTTTATAATATGATAATTGGATATTAATCTGTGTTCNAAAAATNATAGTAATGCCACCTNANTT]




>consensus_10489#2
CCACCCTCGGGCCCCTTCCCCGGCGGNCGGCCCGGTGATCGGCCCCTCCATGCTGTCCTT
CCTCGCCTACTACCTACAGTAAGGAAGGGAGGAATGATGAAGGTGTTNCGTGAGTGTGGG
TGTGGAGGGGAGGAGAGGACATTTGGTTTGATATGTGNNCGTTATCGGTCATGTTATAAT
TAAGTGTCNAAATGTGGTTTTTGTTTGGATTTGATTGACAATGNTGANCCATTAGNCCAN
TCATTTAATTTGCTCGCCTTNTNANCCCCTCGTGTGNTNATTTGCNAATTACATTTGTAA
AGAGGGGAAAATGAGGTGGCATTACTATTATTTTTTATAATATGATAATTGGATATTAAT
CTGTGTTCNAAAAATNATAGTAATGCCACCTNANTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10489#1      ------------------------------------------------------------
consensus_10489#2      ------------------------------------------------------------
consensus_10489#0      AACATTAACCCCAATCCTATCCTGCCAATAAAGCCCTTCCTTTCTTCCTCGTCTCCAGCG 60
                                                                                   

consensus_10489#1      -------------------------------------------------------GCCGT 5
consensus_10489#2      ------------------------------------------------------------
consensus_10489#0      GCCGCTTCCTCGACCGTACCCTCCTCAGGATCATGGAGATGAAGAAGATTGCCTGCGCCG 120
                                                                                   

consensus_10489#1      CCTTTGTCGCTGCCTCGGCAACCGTGGCCCTTCGCCGTCAAGGCGCCCGCCCCTGCCCCC 65
consensus_10489#2      ------------------------------------------------------------
consensus_10489#0      TCCTTGTCGCTGCCTCGGCCACCGTGGCCCT-CGCCGTCGAGGCGCCCGCCCCTGCCCCC 179
                                                                                   

consensus_10489#1      CACNAGCGCCGCCGCAACCTCGGGCCCCTTCCC-GGCGGTCGGCGCGGTGATCGGCGCCT 124
consensus_10489#2      -------------CCACCCTCGGGCCCCTTCCCCGGCGGNCGGCCCGGTGATCGGCCCCT 47
consensus_10489#0      -ACCAGCGCCGCCGCCACCTCGGCCGCCTTCCC-GGCGGTCGGCGCGGTGATCGGCGCCT 237
                                     *  ****** * ******* ***** **** *********** ***

consensus_10489#1      CCATGCTGTCCTTCTTCGCCTACTACCTACAGTAAGGAAGGGAGGAATGATGAAGGTGTT 184
consensus_10489#2      CCATGCTGTCCTTCCTCGCCTACTACCTACAGTAAGGAAGGGAGGAATGATGAAGGTGTT 107
consensus_10489#0      CCATGCTGTCCTTCTTCGCCTACTACCTACAGTAAGGAAGGGAGGAATGATGAAGGTGTT 297
                       ************** *********************************************

consensus_10489#1      GCGTGAGTGTGGGTGTGGAGGGGAGGAGAGGACATTTGGTTTGATATGTGTTCGTTATCG 244
consensus_10489#2      NCGTGAGTGTGGGTGTGGAGGGGAGGAGAGGACATTTGGTTTGATATGTGNNCGTTATCG 167
consensus_10489#0      GCGTGAGTGTGGGTGTGGAGGGGAGGAGAGNNNNTTTTGGTTTGTNTTTGTTGGTTATTG 357
                        *****************************    *** * **  * * **   ***** *

consensus_10489#1      TTCATGTTATAATTAAGTGTCTAAATGTGGTTTTTGTTTGGATTTGATTGACA-ATGTTG 303
consensus_10489#2      GTCATGTTATAATTAAGTGTCNAAATGTGGTTTTTGTTTGGATTTGATTGACA-ATGNTG 226
consensus_10489#0      TTT-TGTGGTTAT-GTGTGTTTTTGGGTGGGGGGTGTGGGGGGTGGATGGTTGGATGGTT 415
                        *  ***  * **   ****      ****    ***  **  * *** *    *** * 

consensus_10489#1      ATCCATTAGTCCATTCATTTAATTTGCTCGCCTTTTCTTCCCCTCGTGTGTTCATTTGCT 363
consensus_10489#2      ANCCATTAGNCCANTCATTTAATTTGCTCGCCTTNTNANCCCCTCGTGTGNTNATTTGCN 286
consensus_10489#0      TTTGGTTGGGTGGG--GTTTGGTTGGGGTGGTAGTTTGTTTTGTTGTTTAGGGA---GAG 470
                            ** *        ***  ** *   *     *       * ** *    *   *  

consensus_10489#1      AATTACATTTGTAAAGAGGGGAAAATGAGGTGGCATTACTATTATTTTTTATAATATGAT 423
consensus_10489#2      AATTACATTTGTAAAGAGGGGAAAATGAGGTGGCATTACTATTATTTTTTATAATATGAT 346
consensus_10489#0      GAGGAGATGAG-AGAAAAGGGTAAGTGGGAAAAAAAGTGAGTGAAGTGTGGAGGTAGGAA 529
                        *  * **  * * * * *** ** ** *     *      * *  * *     ** ** 

consensus_10489#1      AATTGGATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 483
consensus_10489#2      AATTGGATATTAATCTGTGTTCNAAAAATNATAGTAATGCCACCTNANTT---------- 396
consensus_10489#0      GAAAAGAAGGTAGTGGAAAAAAAATAAGTTAAGTATATTAGACTATATTGATTATGAGAG 589
                        *   **   **           * **   *     *    *    *             

consensus_10489#1      AAA------------------ 486
consensus_10489#2      ---------------------
consensus_10489#0      TACTCCCAAACCGAGCCAAGG 610