These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10493#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 768 fasta sequence [TATCCTCTAGAGC-GGCGCCTCGGCTCCGGCGCCGCCCTCTTCTCGAGGAACCCGACGTAGAGGTCCGACTGCTCGGTGTCGCAGCTGGGCAGCGCCGCCCGCTCGCCGCCGTCGGCCATGGCCCTGACGAACGACACGAACTGGCGCCAGTTGTC-GCCGTCGAACAGCTTCTTGTTCATGCGCAGGTAC-GTGAAC-GCGCCCAGCCCGGCGCTCGCCGCGGTGGCCACCACCTGCGCGAACGCCGCCTCGTCGTACCGCTCCAGCGCGTTCTCGCCGGCGAGCCCCACGCGCGCCGC-GCGC-GCCG-GGACCGCACCTGCCGCACCAGCTGCTCCGGC-GA-GCACCCGGC-GTGCTCCGGCTGCTGCTCGTCCCGCATCTCCATGCAC-GTGAAGTTGAGCACCGCGCC-GC-GCCGCGCCAGCATC-GCCGCGACGGGCGCGTACCCGTCGCGGCGCCGCGTG-TTGTAGTACCCCGCCGTGAGCTCCGC-GGCGTGCGA--CCGCGTCC--GGTAGTGCCAGTGGATGCCGGCGACCTTGGCCGAGAGCGCGGCGCCGGTGCCGCGGAAGACGGCCTCGGCGGCGGCCAGGACGCGGTCGCCGTGCTCCAGCAGCATCCCGGAGTACCACCCGAGGAAGAAGTCGCCGTACTCGGTGCACCACGTGCCGTCTCGCCGGAAGAACCCCGTCTCCTCCGGGAACTGCTTGTACTCGCCGGCGTCGTGCGGCCCGCCCCTCCACCACTCCTCGTGCCCCGCCGACGCCGCCGCCTGCTGCAGCG] [-] EMBL BI810126 [ ATCCTCTAGAGC GGCGCCTCGGCTCCGGCGCCGCCCTCTTCTCGAGGAACCCGACGTAGAGGTCCGACTGCTCGGTGTCGCAGCTGGGCAGCGCCGCCCGCTCGCCGCCGTCGGCCATGGCCCTGACGAACGACACGAACTGGCGCCAGTTGTC GCCGTCGAACAGCTTCTTGTTCATGCGCAGGTAC GTGAAC GCGCCCAGCCCGGCGCTCGCCGCGGTGGCCACCACCTGCGCGAACGCCGCCTCGTCGTACCGCTCCAGCGCGTTCTCGCCGGCGAGCCCCACGCGCGCCGC GCGC GCCG GGACCGCACCTGCCGCACCAGCTGCTCCGGC GA GCACCCGGC GTGCTCCGGCTGCTGCTCGTCCCGCATCTCCATGCAC GTGAAGTTGAGCACCGCGCC GC GCCGCGCCAGCATC GCCGCGACGGGCGCGTACCCGTCGCGGCGCCGCGTG TGTAGTACCCCGCCGTGAGCTCCGC GG GTGCGA CG GTCC GGTAGTGCCAG GGATG CGG GAACTTGGGCGAGAGC ] [-] EMBL BI811404 [tggaCTCTAGAGCGGGCG CTCGGCTCCGGCGCCGCCCTCTTCTCGAGGAACCCGACGTA AGGTCCGACTG TCGGTGTCGCAGCTGGGCAGCGCCGCCCGCTCGCCGCCGTCGGCCATGGCCCTGACGAACGACACGAACTGGCGCCAGTTGTCTGCCGTCGAACAGCTTCTTGTTCATGCGCAGGTACTGTGAACTGCGCCCAGCCCGGCGCTCGCCGCGGTGGCCACCACCTGCGCGAACGCCGCCTCGTCGTACCGCTCCAGCGCGTTCTCGCCGG GAGCCCCACGCGCGCCGCTGCGCTGCCG GGACCTGACCTGCCGCACCAGCTGCTCCGGCTGATGCACCCGGCTGTGCTCCGGCTGCTGCTCGTCCCGCATCTCCATGCACTGTGAAGTTGAGCACCGGGCCTGCTGCCGTGCCAGCATCTGCCGGGACGGGCGCGTACCCGTCGCGG GCCGCGTGTTTGTAGTACCCCG CGTGAGCTCCGCGGGGGTGCGAACCCGCGTCCGGGGTAGTGCCAGTGGATTGCGGCGAACTTGtgg ] [+] EMBL CB663767 [ GTAGAGGTCCGACTGCTCGGTGTCGCAGCTGGGCAGCGCCGCCCGCTCGCCGCCGTCGGCCATGGCCCTGACGAACGACACGAACTGGCGCCAGTTGTC GCCGTCGAACAGCTTCTTGTTCATGCGCAGGTAC GTGAAC GCGCCCAGCCCGGCGCTCGCCGCGGTGGCCACCACCTGCGCGAACGCCGCCTCGTCGTACCGCTCCAGCGCGTTCTCGCCGGCGAGCCCCACGCGCGCCGC GCGC GCCGCGGACCGCACCTGCCGCACCAGCTGCTCCGGC GA GCACCCGGC GTGCTCCGGCTGCTGCTCGTCCCGCATCTCCATGCAC GTGAAGTTGAGCACCGCGCC GC GCCGCGCCAGCATC GCCGCGACGGGCGCGTACCCGTCGCGGCGCCGCGTG TTGTAGTACCCCGCCGTGAGCTCCGC GGCGTGCGA CCGCGTCC GGTAGTGCCAGTGGATGCCGGCGACCTTGGCCGAGAGCGCGGCGCCGGTGCCGCGGAAGACGGCCTCGGCGGCGGCCAGGACGCGGTCGCCGTGCTCCAGCAGCATCCCGGAGTACCACCCGAGGAAGAAGTCGCCGTACTCGGTGCACCACGTGCCGTCTCGCCGGAAGAACCCCGTCTCCTCCGGGAACTGCTTGTACTCGCCGGCGTCGTGCGGCCCGCCCCTCCACCACTCCTCGTGCCCCGCCGACGCCGCCGCCTGCTGCAGCG] [+] EMBL BU667274 [ GGTGGCCACCACCTGCGCGAACGCCGCCTCGTCGTACCGCTCCAGCGCGTTCTCGCCGGCGAGCCCCACGCGCGCCGC GCGC GCCGCGGACCGCACCTGCCGCACCAGCTGCTCCGGC GA GCACCCGGC GTGCTCCGGCTGCTGCTCGTCCCGCATCTCCATGCAC GTGAAGTTGAGCACCGCGCC GC GCCGCGCCAGCATC GCCGCGACGGGCGCGTACCCGTCGCGGCGCCGCGTG TTGTAGTACCCCGCCGTGAGCTCCGC GGCGTGCGA CCGCGTCC GGTAGTGCCAGTGGATGCCGGCGACCTTGGCCGAGAGCGCGGCGCCGGTGCCGCGGAAGACGG CTCGGCGGCGGCCAGGACGCGGTCGCCGT ] [-] EMBL CB648011 [ GGCGTGCGA CAGCGTCC GGTAGTGCCAGTGGATGCCGGCGACCTTGGCCGAGAGCGCGGCGCCGGTGCCTCGGAAGACGGCCTGGGCGGCGTCCAGGACGCGGTCGCCGTGCTCCAGCAGCATCCCGGAGTACCACCCGAGGAAGAAGTCGCCGTACTCGGTGCACCACGTGCCGTCTCGCCGGAAGAACCCCGTCTCCTCCGGGAACTGCTTGTACTCGCCGGCGTCGTGAGGACCGCCCCTCCCCCACTC ] consensusID : consensus_10493#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence [GAAACAGCGCCACCCGACGCGGCAACATCGCCGCAACAGGCGCGTACCCGTCGCGGCGCCGCGCGTTGTAGTACCGCGACGGGAGCTCCCCGGATGGCGACCGCGTACACTATTGCCACTGGATGCAAGGTACCTTGGCCGAGAGCGCTGCGCCGGAGCCTCGGAAGACTGCCTCGGCGGCGGCCAGAACGCGGTCTCCGTGCTCCAGCAGCATCCCGGAGTACCACCCGAGGAAGAAGTCGCCGTACTCGGTGCACCACGTGCCGTCTCGCCGGAAGAACCCCGTCTCCTCCGGGAACTGCTTGTACTCGCCGGCGTCGTGCGGCCCGCCCCTCCCCCACTCCTCGTGCCCCGCCGCCGCCGCCGCCTGCTGCAGCGACGCCCTCATGTACTTGTCATAGCATTGGAACTCGCCGATGCCAGGGAAACGCCATGT] [+] EMBL CB661665 [GAAACAGCGCCACCCGACGCGGCAACATCGCCGCAACAGGCGCGTACCCGTCGCGGCGCCGCGCGTTGTAGTACCGCGACGGGAGCTCCCCGGATGGCGACCGCGTACACTATTGCCACTGGATGCAAGGTACCTTGGCCGAGAGCGCTGCGCCGGAGCCTCGGAAGACTGCCTCGGCGGCGGCCAGAACGCGGTCTCCGTGCTCCAGCAGCATCCCGGAGTACCACCCGAGGAAGAAGTCGCCGTACTCGGTGCACCACGTGCCGTCTCGCCGGAAGAACCCCGTCTCCTCCGGGAACTGCTTGTACTCGCCGGCGTCGTGCGGCCCGCCCCTCCCCCACTCCTCGTGCCCCGCCGCCGCCGCCGCCTGCTGCAGCGACGCCCTCATGTACTTGTCATAGCATTGGAACTCGCCGATGCCAGGGAAACGCCATGT] consensusID : consensus_10493#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 222 fasta sequence [GATCCTCTAAGCGGCGCCTCGGCTCCGGTGCCGCCTCTTCTCGAGGAACCCGACGTAGAGGTCCGACTGCTCGGTGTCGCAGCTGGGCAGCGCCGCCCGCTCGCCGCCGTCGGCCATGGCCTGACGAACGACACGAACTGGCGCCAGTTGTCGCCGTCGAACAGCTTCTTGTTCAATTGCGGCACTGTGTACATGTTGAAACTGCAGCCCAAGCTGGCGTGC] [-] EMBL BI810158 [GATCCTCTAAGCGGCGCCTCGGCTCCGGTGCCGCCTCTTCTCGAGGAACCCGACGTAGAGGTCCGACTGCTCGGTGTCGCAGCTGGGCAGCGCCGCCCGCTCGCCGCCGTCGGCCATGGCCTGACGAACGACACGAACTGGCGCCAGTTGTCGCCGTCGAACAGCTTCTTGTTCAATTGCGGCACTGTGTACATGTTGAAACTGCAGCCCAAGCTGGCGTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10493#0 TATCCTCTAGAGCGGCGCCTCGGCTCCGGCGCCGCCCTCTTCTCGAGGAACCCGACGTAG 60 consensus_10493#1 ------------------------------------------------------------ consensus_10493#2 ------------------------------------------------------------ consensus_10493#0 AGGTCCGACTGCTCGGTGTCGCAGCTGGGCAGCGCCGCCCGCTCGCCGCCGTCGGCCATG 120 consensus_10493#1 ------------------------------------------------------------ consensus_10493#2 ------------------------------------------------------------ consensus_10493#0 GCCCTGACGAACGACACGAACTGGCGCCAGTTGTCGCCGTCGAACAGCTTCTTGTTCATG 180 consensus_10493#1 ------------------------------------------------------------ consensus_10493#2 ------------------------------------------------------------ consensus_10493#0 CGCAGGTACGTGAACGCGCCCAGCCCGGCGCTCGCCGCGGTGGCCACCACCTGCGCGAAC 240 consensus_10493#1 ------------------------------------------------------------ consensus_10493#2 ------------------------------------------------------------ consensus_10493#0 GCCGCCTCGTCGTACCGCTCCAGCGCGTTCTCGCCGGCGAGCCCCACGCGCGCCGCGCGC 300 consensus_10493#1 ------------------------------------------------------------ consensus_10493#2 ------------------------------------------------------------ consensus_10493#0 GCCGGGACCGCACCTGCCGCACCAGCTGCTCCGGCGAGCACCCGGCGTGCTCCGGCTGCT 360 consensus_10493#1 ------------------------------------------------------------ consensus_10493#2 ------------------------------------------------------------ consensus_10493#0 GCTCGTCCCGCATCTCCATGCACGTGAAGTTGAGCACCGCGCCGCGCCGCGCCAGCATCG 420 consensus_10493#1 ------------------------------GAAACAGCGCCACCCGACGCGGCAACATCG 30 consensus_10493#2 ------------------------------------------------------------ consensus_10493#0 CCGCGACGGGCGCGTACCCGTCGCGGCGCCGCGTGTTGTAGTACCCCGCCGTGAGCTCCG 480 consensus_10493#1 CCGCAACAGGCGCGTACCCGTCGCGGCGCCGCGCGTTGTAGTACCGCGACGGGAGCTCCC 90 consensus_10493#2 ------------------------------------------------------------ consensus_10493#0 CGGCGTGCGACCGCGTCCGGTAGTGCCAGTGGATGCCGGCGACCTTGGCCGAGAGCGCGG 540 consensus_10493#1 CGGATGGCGACCGCGTACACTATTGCCACTGGATGCAAGGTACCTTGGCCGAGAGCGCTG 150 consensus_10493#2 ------------------------------------------------------------ consensus_10493#0 CGCCGGTGCCGCGGAAGACGGCCTCGGCGGCGGCCAGGACGCGGTCGCCGTGCTCCAGCA 600 consensus_10493#1 CGCCGGAGCCTCGGAAGACTGCCTCGGCGGCGGCCAGAACGCGGTCTCCGTGCTCCAGCA 210 consensus_10493#2 ----------------GATCCTCTAAGCGGCGCCT------CGGCTCCGGTGCC---GCC 35 ** ** ****** * *** * **** ** consensus_10493#0 GCATCCCGGAGTACCACCCGAGGAAGAAGTCGCCGTACTCGGTGCACCACGTGCCGTCTC 660 consensus_10493#1 GCATCCCGGAGTACCACCCGAGGAAGAAGTCGCCGTACTCGGTGCACCACGTGCCGTCTC 270 consensus_10493#2 TCTTCTCGAGGAACC---CGACGTAGAGGTCCGACTGCTCGGTG------------TCGC 80 * ** ** * *** *** * *** *** * ******* ** * consensus_10493#0 GCCGGAAGAACCCCGTCTCCTCCGGGAACTGCTTGTACTCGCCGGCGTCGTGCGGCCCGC 720 consensus_10493#1 GCCGGAAGAACCCCGTCTCCTCCGGGAACTGCTTGTACTCGCCGGCGTCGTGCGGCCCGC 330 consensus_10493#2 AGCTGGGCAGCGCCGCCCGCTC--GCCGCCGTCGGCCATGGCC--TGACGAACGACACGA 136 * * * * *** * *** * * * * * *** * ** ** * ** consensus_10493#0 CCCTCCACCACTCCTCGTGCCCCGCCGACGCCGCCGCCTGCTGCAGCG------------ 768 consensus_10493#1 CCCTCCCCCACTCCTCGTGCCCCGCCGCCGCCGCCGCCTGCTGCAGCGACGCCCTCATGT 390 consensus_10493#2 ACTGGCGCCAGTTGTCG----CCGTCGA-ACAGCTTCTTGTT-CAATTGCGGCACTGTGT 190 * * *** * *** *** ** * ** * ** * ** consensus_10493#0 ---------------------------------------------- consensus_10493#1 ACTTGTCATAGCATTGGAACTCGCCGATGCCAGGGAAACGCCATGT 436 consensus_10493#2 ACATGTTGAAACTGCAGCCCAAGCTGGCGTGC-------------- 222 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||