cluster # 10499

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Oryza sativa
cluster # 10499 cluster # 10499 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10499#0 length = 655 sequences # 6

consensus_10499#1 length = 315 sequences # 1

consensusID : consensus_10499#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 655
fasta sequence

                              [TAATGCTGAAGAACTTGCCAACACTATAGGACAGACA-ATTGATGCTACAGAAATGCCAGATGCGATAGAAATCATA-TTTCAGACCGC-GCTTAACCTGGGAAGACA-TGGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCAGTATCCATGCTGCGCTTTCTCCTGA-CTGAGGCACCGTCACTCGCCCTG-AACCCCGCTCTGTCCCTAACAAGAGATGATC-GACGCCGCCTGCGCAC-ATACATTGAAGCCGTTAACG-CTAGGCTCGTCCCGTTGCAATACCAGCGGCACTGACCGCTCACCTGTACAATATTCTTTCATCCTGTACATATATTCGTTGGCCCAAACGAGGGCGTGTAAGATATGTCATGTCTGAGAACGTGCTCCGATTAGGGAGAAGTAGCGAAAAATCCAGTGTAACTTGCCCAAACTGCCTACTGTAACGTGAGCTCGGTGTGCTTGCATGGTACGCCTGATTATCAGGCAGCTCAGGCTGGCAGCTGAAGGCCC-GACCAAGGTCGTTTGTGGACATGTAAAGCAGACTGCTACCTCGATGGTTTGTTCATTAAAATTTGGGCTTTTACCCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTA]

[+] EMBL BQ909121             [TATTGCTGAAGAACTTGCCAACACTATAGGACAGACACATTGATGCTACAGAAATGCCAGATGCGATAGAAATCATA TTTCAGACCGC GCTTAACCTGGGAAGACACTGGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCAGTATCCATGCTGCGCTTTCTCCTGA CTGAGGCACCGTCACTCGCCCTG AACCCCGCTCTGTCCCTAACAAGAGATGATC GACGCCGCCTGCGCAC ATACATTGAAGCCGTTAACG CTAGGCTCGTCCCGTTGCAATACCAGCGGCACTGACCGCTCACCTGTACAATATTCTTTCATCCTGTACATATATTCGTTGGCCCAAACGAGGGCGTGTAAGATATGTCATGTCTGAGAACGTGCTCCGATTAGGGAGAAGTAGCGAAAAATCCAGTGTAACTTGCCC AACTGCCTACTGTAACGTGAGCTCGGTGTGCTTGCATGGTACGCCTGATTATCAGGCAGCTCAGGCTGGCAGCTGAAGGCCC GACCAAGGTCGTTTGTGGACATGTAAAGCAGACTGCTACCTCGATGGTTTGTTCATTACCTTCTGGGCTTTTACACTGCAAAAAAAAAAAAA                               ]
[+] EMBL AK058854             [ tATGCTGAAGAACTTGCCAACACTATAGGACAGACA GTTGATGCTACAGAAATGCCAGATGCGATAGAAATCATA TTTCAGACCGC GCTTAACCTGGGAAGACA TGGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCAGTATCCATGCTGCGCTTTCTCCTGA CTGAGGCACCGTCACTCGCCCTG AACCCCGCTCTGTCCCTAACAAGAGATGATC GACGCCGCCTGCGCAC ATACATTGAAGCCGTTAACG CTAGGCTCGTCCCGTTGCAATACCAGCGGCACTGACCGCTCACCTGTACAATATTCTTTCATCCTGTACATATATTCGTTGGCCCAAACGAGGGCGTGTAAGATATGTCATGTCTGAGAACGTGCTCCGATTAGGGAGAAGTAGCGAAAAATCCAGTGTAACTTGCCCAAACTGCCTACTGTAACGTGAGCTCGGTGTGCTTGCATGGTACGCCTGATTATCAGGCAGCTCAGGTTGGCAGCTGAAGGCCC GACCATGGTCGTTTGTGGACATGTAAAGCAGACTGCTACCTCGATGGTTTGTTCATTAAAATTTGGGCT                                                      ]
[-] EMBL CB631446             [  ATGCTGAAGAACTTGCCAACACTATAGGACAGACA ATTGATGCTACAGAAATGCCAGATGCGATAGAAATCATA TTTCAGACCGC GCTTAACCTGGGAAGACA TGGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCAGTATCCATGCTGCGCTTTCTCCTGA CTGAGGCACCGTCACTCGCCCTG AACCCCGCTCTGTCCCTGACAAGAGATGATC GACGCCGCCTGCGCAC ATACATTGAAGCCGTTAACG CTAGGCTCGTCCCGTTGCAATACCAGCGGCACTGACCGCTCACCTGTACAATATTCTTTCATCCTGTACATATATTCGTTGGCCCAAACGAGGGCGTGTAAGATATGTCATGTCTGAGAACGTGCTCCGATTAGGGAGAAGTAGCGAAAAATCCAGTGTAACTTGCCCAAACTGCCTACTGTAACGTGAGCTCGGTGTGCTTGCATGGTACGCCTGATTATCAGGCAGCTCAGGCTGGCAGCTGAAGGCCC GACCAAGGTCGTTTGTGGACATGTAAAGCAGACTGCTCCTTTAAAGGTTTGTTCATTAAAAT                                                             ]
[+] EMBL AA750577             [        AAGAACTTGCCAACACTATAGGACAGACA ATTGATGCTACAGAAATGCCAGATGCGATAGAAATCATA TTTCAAACCGC GCTTAACCTGGGAAGACA TGGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTCCCATGGTGCTGTACTCGAAGGCAGTATCCATGCTGCCCTTCCTCCTGA CTGCGGCACCGTCACTTGACCTGAAACCCTGGTCTGTCCCT                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BI812266             [                                                                        TCATAGTTTCAGACCGCGGCTTAACCT GGAAGACA TGGTGGTCTTGA GAGATGATGGGAAAATCAGCATCTGCCATGGT CTGTACTCGAA GCAGTATCCAT CTGCGCTTTCTCCTGAGCTGAGGCACCGTCACTCGCCCTG AACCCCGCTCTGTCCCGTACAAGAGATGATCGGAC CCGCCTGCGCACAATACATTGAA CCGTTAACGTCTAGGCTCGTCCCGTTTCAATACCAGCGGCACTGACCGCTCACCTGTACAATATTCTTTCATCCTGTACATATATTCGTTGGCCCAAACGAGGGCGTGTAAGATATGTCATGTCTGAGAACGTGCTCCGATTAGGGAGAAGTAGCGAAAAATCCAGTGTAACTTGCCCAAACTGCCTACTGTAACGTGAGCTCGGTGTGCTTGCATGGTACGCCTGATTATCAGGCAGCTCAGGCTGGCAGCTGAAGGCCCAGACCAAGGTCGTTTGTGGACATGTAAAGCAGACTGCTACCTCGATGGTTTGTTCATTAAAATTTGGGCTTTTACCCTGCAAAAAAAAAA                                  ]
[-] EMBL CF326510             [                                                                                                                                                                                                                         TG AACCCCGTTTTGTCCCTAACAAGAGATGATC GACGCCGCCTGCGCAC ATACATTGAAGCCGTTAACG TTAGGCTCGTCCCGTTGCAATACCAGCGGCACTGACCGCTCCCCTGTACAATATTCTTTCATCCTGTACATATATTCGTTGGCCCAAACGAGGGCGTGTAAAATATGTCATGTTTGAGAACGTGCTCCGATTAGGGAGAAGTAGCGAAAAATCCAGTGTAACTTGCCCAAACTGCCTACTGTAACGTGAGCTCGGTGTGCTTGCATGGTACGCCTGATTATCAGGCAGCTCAGAAAGACAGCTGAAGGCCC GCCCATGGTCGTTTGTGGACATGTAAAGCAGACTGCTCCCTCGATGGTTTGTTCATTAAAATTTGGGCTTTTCCCCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTA]




>consensus_10499#0
TAATGCTGAAGAACTTGCCAACACTATAGGACAGACAATTGATGCTACAGAAATGCCAGA
TGCGATAGAAATCATATTTCAGACCGCGCTTAACCTGGGAAGACATGGTGGTGTTGATGA
GATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCAGTATCCATGCTGCG
CTTTCTCCTGACTGAGGCACCGTCACTCGCCCTGAACCCCGCTCTGTCCCTAACAAGAGA
TGATCGACGCCGCCTGCGCACATACATTGAAGCCGTTAACGCTAGGCTCGTCCCGTTGCA
ATACCAGCGGCACTGACCGCTCACCTGTACAATATTCTTTCATCCTGTACATATATTCGT
TGGCCCAAACGAGGGCGTGTAAGATATGTCATGTCTGAGAACGTGCTCCGATTAGGGAGA
AGTAGCGAAAAATCCAGTGTAACTTGCCCAAACTGCCTACTGTAACGTGAGCTCGGTGTG
CTTGCATGGTACGCCTGATTATCAGGCAGCTCAGGCTGGCAGCTGAAGGCCCGACCAAGG
TCGTTTGTGGACATGTAAAGCAGACTGCTACCTCGATGGTTTGTTCATTAAAATTTGGGC
TTTTACCCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTA

consensusID : consensus_10499#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 315
fasta sequence

                              [CGAGCTCGTSCATTCGGGCASGGGAAACTTGCCAACACTATAGGACAGACAGTTGATGCTACAGAAATGCCAGATGCGATAGAAATCATATTTCAGACCGCGCTTAACCTGGGAAGACATGGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCAGTATCCATGCTGCGCTTTCTCCTGACTSGAGGCACCGTCACTCGCCCTGAACCCCKCTCTGTCCCTAACAAGAGATGMKCGRCGCCGCCTGCGCACATACATTGAGGCCGTTAACGCTAGGTCTCCCCCCGTTAH]

[+] EMBL BE229584             [CGAGCTCGTSCATTCGGGCASGGGAAACTTGCCAACACTATAGGACAGACAGTTGATGCTACAGAAATGCCAGATGCGATAGAAATCATATTTCAGACCGCGCTTAACCTGGGAAGACATGGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCAGTATCCATGCTGCGCTTTCTCCTGACTSGAGGCACCGTCACTCGCCCTGAACCCCKCTCTGTCCCTAACAAGAGATGMKCGRCGCCGCCTGCGCACATACATTGAGGCCGTTAACGCTAGGTCTCCCCCCGTTAH]




>consensus_10499#1
CGAGCTCGTSCATTCGGGCASGGGAAACTTGCCAACACTATAGGACAGACAGTTGATGCT
ACAGAAATGCCAGATGCGATAGAAATCATATTTCAGACCGCGCTTAACCTGGGAAGACAT
GGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCA
GTATCCATGCTGCGCTTTCTCCTGACTSGAGGCACCGTCACTCGCCCTGAACCCCKCTCT
GTCCCTAACAAGAGATGMKCGRCGCCGCCTGCGCACATACATTGAGGCCGTTAACGCTAG
GTCTCCCCCCGTTAH

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10499#0      -------------TAATGCTGAAGAA-CTTGCCAACACTATAGGACAGACAATTGATGCT 46
consensus_10499#1      CGAGCTCGTSCATTCGGGCASGGGAAACTTGCCAACACTATAGGACAGACAGTTGATGCT 60
                                    *   **    *** ************************ ********

consensus_10499#0      ACAGAAATGCCAGATGCGATAGAAATCATATTTCAGACCGCGCTTAACCTGGGAAGACAT 106
consensus_10499#1      ACAGAAATGCCAGATGCGATAGAAATCATATTTCAGACCGCGCTTAACCTGGGAAGACAT 120
                       ************************************************************

consensus_10499#0      GGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCA 166
consensus_10499#1      GGTGGTGTTGATGAGATGATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCA 180
                       ************************************************************

consensus_10499#0      GTATCCATGCTGCGCTTTCTCCTGACTG-AGGCACCGTCACTCGCCCTGAACCCCGCTCT 225
consensus_10499#1      GTATCCATGCTGCGCTTTCTCCTGACTSGAGGCACCGTCACTCGCCCTGAACCCCKCTCT 240
                       ***************************  ************************** ****

consensus_10499#0      GTCCCTAACAAGAGATGATCGACGCCGCCTGCGCACATACATTGAAGCCGTTAACGCTAG 285
consensus_10499#1      GTCCCTAACAAGAGATGMKCGRCGCCGCCTGCGCACATACATTGAGGCCGTTAACGCTAG 300
                       *****************  ** *********************** **************

consensus_10499#0      G-CTCGTCCCGTTGCAATACCAGCGGCACTGACCGCTCACCTGTACAATATTCTTTCATC 344
consensus_10499#1      GTCTCCCCCCGTTAH--------------------------------------------- 315
                       * ***  ******                                               

consensus_10499#0      CTGTACATATATTCGTTGGCCCAAACGAGGGCGTGTAAGATATGTCATGTCTGAGAACGT 404
consensus_10499#1      ------------------------------------------------------------
                                                                                   

consensus_10499#0      GCTCCGATTAGGGAGAAGTAGCGAAAAATCCAGTGTAACTTGCCCAAACTGCCTACTGTA 464
consensus_10499#1      ------------------------------------------------------------
                                                                                   

consensus_10499#0      ACGTGAGCTCGGTGTGCTTGCATGGTACGCCTGATTATCAGGCAGCTCAGGCTGGCAGCT 524
consensus_10499#1      ------------------------------------------------------------
                                                                                   

consensus_10499#0      GAAGGCCCGACCAAGGTCGTTTGTGGACATGTAAAGCAGACTGCTACCTCGATGGTTTGT 584
consensus_10499#1      ------------------------------------------------------------
                                                                                   

consensus_10499#0      TCATTAAAATTTGGGCTTTTACCCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 644
consensus_10499#1      ------------------------------------------------------------
                                                                                   

consensus_10499#0      ACTCGAGACTA 655
consensus_10499#1      -----------