These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10500#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1531 fasta sequence [TCCACTTCCCCCACGACCACCAGCGTCCGAGCGGGTCGAGGAGGCCATGTCCGGCGAAGCAGAGTCCCGCGAGGCGTCGCGGCAGCGGCGGCGGCGGGAGCGGGCTGCGGCGGTCGAGCGATTCGTCGGGGTGCCGCTCGCCGACGTGGTCAGGGAGAACTCGCTCGTGCACCTCCCGCCGGCGGCGGCGGCGCGCCTCCGCGTCGTGCACCCGTCGTGGGCGAGCCACATGTCGTCCCCGCTCTTCGCCGTCGCGCACGCGGCCGCCCCGAGGCGGGTCTCCGGGGTGTTCGTCCCATCAGCGGGGTTCCTCCCCTTCGACGGCGACGACGACGCCGTGCCGTCCCCGTCGCTCTCGTTCGTGCCGGCCTCGTCGGAGCTCGTCGTGCTGTCGTCGTCGCGCGGGGTCGCCTGCTGCTTCTCCCCCGCCGACGACGCGTACGCCGTGTGCAACCCGGCTACGGCGTCGTGGACGGCCGTCCCGTCCCCGCCGTGGCGGTCCTGGCCGCGCCCGGCGATCGTCGTCCTCTTCGACACGAGCGCCTACAACTTCCGCGGCGACTTCACGCTCGTCTGCCCCTTCGAGTCGGAGCCGGGTTCTTCCGGCGCCTACTGCTTCCAGGTGTTCACGTCCGGGACCGGCGCGTGGTGGGTCACCGACGCGATGTCGCCAGCCGAAGGGCTCGTCGCCGCGTCGGGCGTGGCGGCCGGCGCCACGGCGTGGTGGCGGACGAGCATCGGCACCGCGGTGGGGTACACCCCTGTCACGGGGCGCGTCGACCTCGTGACCTGCCCCGGCGACAGTGACCAGTGGGAGATCGGATTGGCCGCGGGCATGCTCCACTGCGCCGTGATCGACGGCGGCGACGTGGTGGTGTTCCGGCTGCACGAGCACGGAATCTGGGAGGTGACCACCAGGGTCGCCGTCGCAGAGATACTGCAACCATCTCAGCCGCCGCCGCCGGCAAGGGCGACGACGTCCACGGAGATCGTGGCGTCCCAGCAGCACGACGAGTCCGGCGCGGAGGAGGAGGAGGGCTCGCGCGCTGTTGTCGCCGCGGCGAATGCACCACTCCGGCTGGACGACGGGGTGCGGCTGCTGGGTTTCCAGGGCGCGGAGGTGGAGGTGGTGGTGCTGGCAGGGAGGCGCCTGGTGGCGTTCGACGCGCGGACGCGGCGGCGGCGCGAGGTCGCCGTGCCGGACGAGGTCGACGCGGCATGGGACGGCGCGGAGCACGCTGCGCACATCAACACCCTCGCGCTGATCGCGCCCGCCGCTCTCGCGGCCGAGCCGCCGCTCGCGAAGCCGCCGGCTGATCCATGAAGTGGCAATGGCATCGTCATCTTAGCGAATCTTACTGCAATGCATGGCGATCAATCACTCGATCTAAGAGTAAGTTTGTGGATGTGAAGTTCCATTTTGAGAAATTTAACTCGCAAGCTGCAATAAATTGTGTATATTAATCATCAGATGAGCTTTTTCCCCAGGGCAATATATGTTTTTCAAATAGTTTTTGGGTGAAAAAAAAGA] [+] EMBL AK106237 [TCCACTTCCCCCACGACCACCAGCGTCCGAGCGGGTCGAGGAGGCCATGTCCGGCGAAGCAGAGTCCCGCGAGGCGTCGCGGCAGCGGCGGCGGCGGGAGCGGGCTGCGGCGGTCGAGCGATTCGTCGGGGTGCCGCTCGCCGACGTGGTCAGGGAGAACTCGCTCGTGCACCTCCCGCCGGCGGCGGCGGCGCGCCTCCGCGTCGTGCACCCGTCGTGGGCGAGCCACATGTCGTCCCCGCTCTTCGCCGTCGCGCACGCGGCCGCCCCGAGGCGGGTCTCCGGGGTGTTCGTCCCATCAGCGGGGTTCCTCCCCTTCGACGGCGACGACGACGCCGTGCCGTCCCCGTCGCTCTCGTTCGTGCCGGCCTCGTCGGAGCTCGTCGTGCTGTCGTCGTCGCGCGGGGTCGCCTGCTGCATCTCCCCCGCCGACGACGCGTACGCCGTGTGCAACCCGGCTACGGCGTCGTGGACGGCCGTCCCGTCCCCGCCGTGGCGGTCCTGGCCGCGCCCGGCGATCGTCGTCCTCTTCGACACGAGCGCCTACAACTTCCGCGGCGACTTCACGCTCGTCTGCCCCTTCGAGTCGGAGCCGGGTTCTTCCGGCGCCTACTGCTTCCAGGTGTTCACGTCCGGGACCGGCGCGTGGTGGGTCACCGACGCGATGTCGCCAGCCGAAGGGCTCGTCGCCGCGTCGGGCGTGGCGGCCGGCGCCACGGCGTGGTGGCGGACGAGCATCGGCACCGCGGTGGGGTACACCCCTGTCACGGGGCGCGTCGACCTCGTGACCTGCCCCGGCGACAGTGACCAGTGGGAGATCGGATTGGCCGCGGGCATGCTCCACTGCGCCGTGATCGACGGCGGCGACGTGGTGGTGTTCCGGCTGCACGAGCACGGAATCTGGGAGGTGACCACCAGGGTCGCCGTCGCAGAGATACTGCAACCATCTCAGCCGCCGCCGCCGGCAAGGGCGACGACGTCCACGGAGATCGTGGCGTCCCAGCAGCACGACGAGTCCGGCGCGGAGGAGGAGGAGGGCTCGCGCGCTGTTGTCGCCGCGGCGAATGCACCACTCCGGCTGGACGACGGGGTGCGGCTGCTGGGTTTCCAGGGCGCGGAGGTGGAGGTGGTGGTGCTGGCAGGGAGGCGCCTGGTGGCGTTCGACGCGCGGACGCGGCGGCGGCGCGAGGTCGCCGTGCCGGACGAGGTCGACGCGGCATGGGACGGCGCGGAGCACGCTGCGCACATCAACACCCTCGCGCTGATCGCGCCCGCCGCTCTCGCGGCCGAGCCGCCGCTCGCGAAGCCGCCGGCTGATCCATGAAGTGGCAATGGCATCGTCATCTTAGCGAATCTTACTGCAATGCATGGCGATCAATCACTCGATCTAAGAGTAAGTTTGTGGATGTGAAGTTCCATTTTGAGAAATTTAACTCGC ] [+] EMBL CB643071 [ CCAGCCTTCGAGCGGGTCGAGGAGGCCATGTCCGGCGAAGCAGAGTCCCGCGAGGCGTCGCGGCAGCGGCGGCGGCGGGAGCGGGCTGCGGCGGTCGAGCGATTCGTCGGGGTGCCGCTCGCCGACGTGGTCAGGGAGAACTCGCTCGTGCACCTCCCGCCGGCGGCGGCGGCGCGCCTCCGCGTCGTGCACCCGTCGTGGGCGAGCCACATGTCGTCCCCGCTCTTCGCCGTCGCGCACGCGGCCGCCCCGAGGCGGGTCTCCGGGGTGTTCGTCCCATCAGCGGGGTTCCTCCCCTTCGACGGCGACGACGACGCCGTGCCGTCCCCGTCGCTCTCGTTCGTGCCGGCCTCGTCGGAGCTCGTCGTGCTGTCGTCGTCGCGCGGGGTCGCCTGCTGCTTCTCCCCCGCCGACGACGCGTACGCCGTGTGCAACCCGGCTACGGCGTCGTGGACGGCCGTCCCGTCCCCGCCGTGGCGGTCCTGGCCGCGCCCGGCGATCGTCGTCCTCTTCCACACCAGCGCCTACAACTTCCGCGGCGACTTCACGCTCGTCTGCCCCTTCGAGTCGGAGCCGGGTTCTTCCGGGGCC ] [+] EMBL CB660966 [ AGCGTCCGAGCGGGTCGAGGAGGCCATGTCCGGCGAAGCAGAGTCCCGCGAGGCGTCGCGGCAGCGGCGGCGGCGGGAGCGGGCTGCGGCGGTCGAGCGATTCGTCGGGGTGCCGCTCGCCGACGTGGTCAGGGAGAACTCGCTCGTGCACCTCCCGCCGGCGGCGGCGGCGCGCCTCCGCGTCGTGCACCCGTCGTGGGCGAGCCACATGTCGTCCCCGCTCTTCGCCGTCGCGCACGCGGCCGCCCCGAGGCGGGTCTCCGGGGTGTTCGTCCCATCAGCGGGGTTCCTCCCCTTCGACGGCGACGACGACGCCGTGCCGTCCCCGTCGCTCTCGTTCGTGCCGGCCTCGTCGGAGCTCGTCGTGCTGTCGTCGTCGCGCGGGGTCGCCTGCTGCTTCTCCCCCGCCGACGACGCGTACGCCGTGTGCAACCCGGCTACGGCGTCGTGGACGGCCGTCCCGTCCCCGCCGTGGCGGTCCTGGCCGCGCCCGGCGATCGTCGTCCTCTTCGACACGAGCGCCTACAACTTCCGCGGCGACTTCACGCTCGTCTGCCCCTTCGAGTCGGAGCCGGGTTCTTCCGGCGCCTACTGCTTCCAGGTGTTCACGTCCGGGACCGGCGCGTGGTGGGTCACCGACGCGATGTCGCCAGCCGAAGGGCTCGTCGCCGCGTCGGGCGTGGCGGCCGGCGCCACGGCGTGGTGGCGGACGAGCATCGGCACCGCGGTGGGGTAC ] [+] EMBL AU092188 [ GGTCTCCGGGGTGTTCGTCCCATCAGCGGGGTTCCTCCCCTTCGACGGCGACGACGACGCCGTGCCGTCCCCGTCGCTCTCGTTCGTGCCGGCCTCGTCGGAGCTCGTCGTGCTGTANTCGTCGCGCGGGGTCGCCTGCTGCTTCTCCCCCGCCGACGACGCGTACGCCGTGTGCAACCCGGCTACGGCGTCGTGGACGGCCGTCCCGTCCCCGCCGTGGCGG ] [-] EMBL CB660967 [ GGCGCCACGGCGTGGTGGCGGACGAGCATCGGCACCGCGGTGGGGTACACCCCTGTCACGGGGCGCGTCGACCTCGTGACCTGCCCCGGCGACAGTGACCAGTGGGAGATCGGATTGGCCGCGGGCATGCTCCACTGCGCCGTGATCGACGGCGGCGACGTGGTGGTGTTCCGGCTGCACGAGCACGGAATCTGGGAGGTGACCACCAGGGTCGCCGTCGCAGAGATACTGCAACCATCTCAGCCGCCGCCGCCGGCAAGGGCGACGACGTCCACGGAGATCGTGGCGTCCCAGCAGCACGACGAGTCCGGCGCGGAGGAGGAGGAGGGCTCGCGCGCTGTTGTCGCCGCGGCGAATGCACCACTCCGGCTGGACGACGGGGTGCGGCTGCTGGGTTTCCAGGGCGCGGAGGTGGAGGTGGTGGTGCTGGCAGGGAGGCGCCTGGTGGCGTTCGACGCGCGGACGCGGCGGCGGCGCGAGGTCGCCGTGCCGGACGAGGTCGACGCGGCATGGGACGGCGCGGAGCACGCTGCGCACATCAACACCCTCGCGCTGATCGCGCCCGCCGCTCTCGCGGCCGAGCCGCCGCTCGCGAAGCCGCCGGCTGATCCATGAAGTGGCAATGGCATCGTCATCTTAGCGAATCTTACTGCAATGCATGGCGATCAATCACTCGATCTAAGAGTAAGTTTGTGGATGTGAAGTTCCATTTTGAGAAATTTAACTCGCAAGCTGCAATAAATTGTGTATATTAATCATCAGATGAGCTTTTTCCCCAGGGCAATATATGTTTTTCAAATAGTTTTTGGGTGAAAAAAAAGA] [-] EMBL CB643072 [ ccCGGCGTGGTGGCGGACGAGCATCGGCACCGCGGTGGGGTACACCCCTGTCACGGGGCGCGTCGACCTCGTGACTTGCCCCGGCGACAGTGACCAGTGGGAGATCGGATTGGCCGCGGGCATGCTCCACTGCGCCGTGATCGACGGCGGCGACGTGGTGGTGTTCCGGCTGCACGAGCACGGAATCTGGGAGGTGACCACCAGGGTCGCCGTCGCAGAGATACTGCAACCATCTCAGCCGCCGCCGCCGGCAAGGGCGACGACGTCCACGGAGATCGTGGCGTCCCAGCAGCACGACGAGTCCGGCGCGGAGGAGGAGGAGGGCTCGCGCGCTGTTGTCGCCGCGGCGAATGCACCACTCCGGCTGGACGACGGGGTGCGGCTGCTGGGTTTCCAGGGCGCGGAGGTGGAGGTGGTGGTGCTGGCAGGGAGGCGCCTGGTGGCGTTCGACGCGCGGACGCGGCGGCGGCGCGAGGTCGCCGTGCCGGACGAGGTCGACGCGGCATGGGACGGCGCGGAGCACGCTGCGCACATCAACACCCTCGCGCTGATCGCGCCCGCCGCTCTCGCGGCCGAGCCGCCGCTCGCGAAGCCGCCGGCTGATCCATGAAGTGGCAATGGCATCGTCATCTTAGCGAATCTTACTGCAATGCATGGCGATCAATCACTCGATCTAAGAGTAAGTTTGTGGATGTGAAGTTCCATTTTGAGAAATTTAACTCGCAAGCTGCAATAAATTGTGTATATTAATCATCAGATGAGCTGTTTCCCCAGTTCAATATATGTTTTTCAAATAcaaaaaaag ] consensusID : consensus_10500#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [TGCCGTTCNACCCCCGGAACCGGCGGCGCACCAAGGTCCGCNTGCCGGACGAGGTCGACGCGNCATGGGACGGCGCGGAGCACCTGCGCACATCAACACCCTNCCCTGANCGCGCACCCCCTCTTCCGGCCGAACCGACGCTCGCGAAACGCCGGCTGANCCATGAAGTGGCAATGGCATCGTCATCTTANCGAATCTTACTGCAATGCATGGCGATCAATNACTCGATCTAAGAGTAANTTTGTGGATGTGAAGTTCCATTTTGAGAAATTTNACTCGCAANCTNCAATAAATTGTGTATATTAATCATCAGATGAGCTTTTTCCCCAGTTCAATATATGTTTTTCAAATAAAAAAAAAAAAAAAAAA] [+] EMBL C96822 [TGCCGTTCNACCCCCGGAACCGGCGGCGCACCAAGGTCCGCNTGCCGGACGAGGTCGACGCGNCATGGGACGGCGCGGAGCACCTGCGCACATCAACACCCTNCCCTGANCGCGCACCCCCTCTTCCGGCCGAACCGACGCTCGCGAAACGCCGGCTGANCCATGAAGTGGCAATGGCATCGTCATCTTANCGAATCTTACTGCAATGCATGGCGATCAATNACTCGATCTAAGAGTAANTTTGTGGATGTGAAGTTCCATTTTGAGAAATTTNACTCGCAANCTNCAATAAATTGTGTATATTAATCATCAGATGAGCTTTTTCCCCAGTTCAATATATGTTTTTCAAATAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10500#0 TCCACTTCCCCCACGACCACCAGCGTCCGAGCGGGTCGAGGAGGCCATGTCCGGCGAAGC 60 consensus_10500#1 ------------------------------------------------------------ consensus_10500#0 AGAGTCCCGCGAGGCGTCGCGGCAGCGGCGGCGGCGGGAGCGGGCTGCGGCGGTCGAGCG 120 consensus_10500#1 ------------------------------------------------------------ consensus_10500#0 ATTCGTCGGGGTGCCGCTCGCCGACGTGGTCAGGGAGAACTCGCTCGTGCACCTCCCGCC 180 consensus_10500#1 ------------------------------------------------------------ consensus_10500#0 GGCGGCGGCGGCGCGCCTCCGCGTCGTGCACCCGTCGTGGGCGAGCCACATGTCGTCCCC 240 consensus_10500#1 ------------------------------------------------------------ consensus_10500#0 GCTCTTCGCCGTCGCGCACGCGGCCGCCCCGAGGCGGGTCTCCGGGGTGTTCGTCCCATC 300 consensus_10500#1 ------------------------------------------------------------ consensus_10500#0 AGCGGGGTTCCTCCCCTTCGACGGCGACGACGACGCCGTGCCGTCCCCGTCGCTCTCGTT 360 consensus_10500#1 ------------------------------------------------------------ consensus_10500#0 CGTGCCGGCCTCGTCGGAGCTCGTCGTGCTGTCGTCGTCGCGCGGGGTCGCCTGCTGCTT 420 consensus_10500#1 ------------------------------------------------------------ consensus_10500#0 CTCCCCCGCCGACGACGCGTACGCCGTGTGCAACCCGGCTACGGCGTCGTGGACGGCCGT 480 consensus_10500#1 ------------------------------------------------------------ consensus_10500#0 CCCGTCCCCGCCGTGGCGGTCCTGGCCGCGCCCGGCGATCGTCGTCCTCTTCGACACGAG 540 consensus_10500#1 ------------------------------------------------------------ consensus_10500#0 CGCCTACAACTTCCGCGGCGACTTCACGCTCGTCTGCCCCTTCGAGTCGGAGCCGGGTTC 600 consensus_10500#1 ------------------------------------------------------------ consensus_10500#0 TTCCGGCGCCTACTGCTTCCAGGTGTTCACGTCCGGGACCGGCGCGTGGTGGGTCACCGA 660 consensus_10500#1 ------------------------------------------------------------ consensus_10500#0 CGCGATGTCGCCAGCCGAAGGGCTCGTCGCCGCGTCGGGCGTGGCGGCCGGCGCCACGGC 720 consensus_10500#1 ------------------------------------------------------------ consensus_10500#0 GTGGTGGCGGACGAGCATCGGCACCGCGGTGGGGTACACCCCTGTCACGGGGCGCGTCGA 780 consensus_10500#1 ------------------------------------------------------------ consensus_10500#0 CCTCGTGACCTGCCCCGGCGACAGTGACCAGTGGGAGATCGGATTGGCCGCGGGCATGCT 840 consensus_10500#1 ------------------------------------------------------------ consensus_10500#0 CCACTGCGCCGTGATCGACGGCGGCGACGTGGTGGTGTTCCGGCTGCACGAGCACGGAAT 900 consensus_10500#1 ------------------------------------------------------------ consensus_10500#0 CTGGGAGGTGACCACCAGGGTCGCCGTCGCAGAGATACTGCAACCATCTCAGCCGCCGCC 960 consensus_10500#1 ------------------------------------------------------------ consensus_10500#0 GCCGGCAAGGGCGACGACGTCCACGGAGATCGTGGCGTCCCAGCAGCACGACGAGTCCGG 1020 consensus_10500#1 ------------------------------------------------------------ consensus_10500#0 CGCGGAGGAGGAGGAGGGCTCGCGCGCTGTTGTCGCCGCGGCGAATGCACCACTCCGGCT 1080 consensus_10500#1 ------------------------------------------------------------ consensus_10500#0 GGACGACGGGGTGCGGCTGCTGGGTTTCCAGGGCGCGGAGGTGGAGGTGGTGGTGCTGGC 1140 consensus_10500#1 ------------------------------------------------------------ consensus_10500#0 AGGGAGGCGCCTGGTGGCGTTCGACGCGCGGACGCGGCGGCGGCGCGAGGTCGCCGTGCC 1200 consensus_10500#1 --------------TGCCGTTCNACCCCCGGAACCGGCGGCGCACCAAGGTCCGCNTGCC 46 ** ***** ** * **** ******** * ***** * **** consensus_10500#0 GGACGAGGTCGACGCGGCATGGGACGGCGCGGAGCACGCTGCGCACATCAACACCCTCGC 1260 consensus_10500#1 GGACGAGGTCGACGCGNCATGGGACGGCGCGGAGCAC-CTGCGCACATCAACACCCTN-C 104 **************** ******************** ******************* * consensus_10500#0 GCTGATCGCGCCCGCCGCTCTCGCGGCCGAGCCGCCGCTCGCGAAGCCGCCGGCTGATCC 1320 consensus_10500#1 CCTGANCGCGCACCCC-CTCTTCCGGCCGAACCGACGCTCGCGAAAC-GCCGGCTGANCC 162 **** ***** * ** **** ******* *** ********** * ********* ** consensus_10500#0 ATGAAGTGGCAATGGCATCGTCATCTTAGCGAATCTTACTGCAATGCATGGCGATCAATC 1380 consensus_10500#1 ATGAAGTGGCAATGGCATCGTCATCTTANCGAATCTTACTGCAATGCATGGCGATCAATN 222 **************************** ****************************** consensus_10500#0 ACTCGATCTAAGAGTAAGTTTGTGGATGTGAAGTTCCATTTTGAGAAATTTAACTCGCAA 1440 consensus_10500#1 ACTCGATCTAAGAGTAANTTTGTGGATGTGAAGTTCCATTTTGAGAAATTTNACTCGCAA 282 ***************** ********************************* ******** consensus_10500#0 GCTGCAATAAATTGTGTATATTAATCATCAGATGAGCTTTTTCCCCAGGGCAATATATGT 1500 consensus_10500#1 NCTNCAATAAATTGTGTATATTAATCATCAGATGAGCTTTTTCCCCAGTTCAATATATGT 342 ** ******************************************** ********** consensus_10500#0 TTTTCAAATAGTTTTTGGGTGAAAAAAAAGA 1531 consensus_10500#1 TTTTCAAATAAA----AAAAAAAAAAAAAAA 369 ********** ******** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||