These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10520#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 776 fasta sequence [CCACAAGCCAAGAAGCTGCAAGAGCAAGCCAAGCCAAGCCAAGAACGAAGCAGCAGCGAGAGCGAGGTGAGCAGCGAGCATGGCGGGCGAGGCGGCGGCGGCGGAGCGGTGGGTGGGGG-CGGCGGTGGACTTCTCGGAGGGGAGCCGCGCGGCGCTGCGGTGGGCGGCGGACAACCTGCTCCGCGCCGGCGACCACCTCATCCTCCTCCACGTCCTCAAGGACCCCGACTACGAGCAGGGCGAGACCCTCCTCTGGGAGGCCACCGGCTCCCCATTGATTCCCCTCTCGGATTTCTCTGAACCTACAATTGCAAAGAAATATGGAGCAAAGCCTGATGCCGAAACATTGGACATGCTTAATACTGTGGCCAGGCAGAAGGAGGTTGTGGTGGTTTTCAAAGTCCTTTGGGGAGATCCCCGTGAGAAGCTATGCCAAGCCATCAACGAAATCCCCATGAGCTGCTTGGTTATTGGAAGCAGGGGTCTTGGCAAACTCAAGAGGGTGCTGTTAGGTAGCGTCAGCGACTACGTCGTGAACAACGCCACTTGCCCAGTCACAGTTGTCAAGACAGCCGATGGTTGATCCTATTGTCATAAATATCCATGTGTTATATAGTCTGCTTAAATCTTTGTCCATCTATCTGAAACATATTGAACCACCATGCAGTGTAATTGTAATAATAAACGAAGTCAACTGAAGACGCTCAGTTGTACTTTGTGCTTGCACTCTCTGAGCCTGACTATGAAATGGATCCTGCTGTTTTTCTTAAAAAAAA] [+] EMBL AK103075 [CCACAAGCCAAGAAGCTGCAAGAGCAAGCCAAGCCAAGCCAAGAACGAAGCAGCAGCGAGAGCGAGGTGAGCAGCGAGCATGGCGGGCGAGGCGGCGGCGGCGGAGCGGTGGGTGGGGG CGGCGGTGGACTTCTCGGAGGGGAGCCGCGCGGCGCTGCGGTGGGCGGCGGACAACCTGCTCCGCGCCGGCGACCACCTCATCCTCCTCCACGTCCCCAAGGACCCCGACTACGAGCAGGGCGAGACCCTCCTCTGGGAGGCCACCGGCTCCCCATTGATTCCCCTCTCGGATTTCTCTGAACCTACAATTGCAAAGAAATATGGAGCAAAGCCTGATGCCGAAACATTGGACATGCTTAATACTGTGGCCAGGCAGAAGGAGGTTGTGGTGGTTTTCAAAGTCCTTTGGGGAGATCCCCGTGAGAAACTATGCCAAGCCATCAACGAAATCCCCATGAGCTGCTTGGTTATTGGAAGCAGGGGTCTTGGCAAACTCAAGAGGGTGCTGTTAGGTAGCGTCAGCGACTACGTCGTGAACAACGCCACTTGCCCAGTCACAGTTGTCAAGACAGCCGATGGTTGATCCTATTGTCATAAATATCCATGTGTTATATAGTCTGCTTAAATCTTTGTCCATCTATCTGAAACATATTGAACCACCATGCAGTGTAATTGTAATAATAAACGAAGTCAACTGAAGACGCTCAGTTGTACTTTGTGCTTGCACTCTCTGAGCCTGACTATGAAATGGATCCTGCTGT ] [+] EMBL AK065771 [CCACAAGCCAAGAAGCTGCAAGAGCAAGCCAAGCCAAGCCAAGAACGAAGCAGCAGCGAGAGCGAGGTGAGCAGCGAGCATGGCGGGCGAGGCGGCGGCGGCGGAGCGGTGGGTGGGGG CGGCGGTGGACTTCTCGGAGGGGAGCCGCGCGGCGCTGCGGTGGGCGGCGGACAACCTGCTCCGCGCCGGCGACCACCTCATCCTCCTCCACGTCCTCAAGGACCCCGACTACGAGCAGGGCGAGACCCTCCTCTGGGAGGCCACCGGCTCCCCATTGATTCCCCTCTCGGATTTCTCTGAACCTACAATTGCAAAGAAATATGGAGCAAAGCCTGATGCCGAAACATTGGACATGCTTAATACTGTGGCCAGGCAGAAGGAGGTTGTGGTGGTTTTCAAAGTCCTTTGGGGAGATCCCCGTGAGAAGCTATGCCAAGCCATCAACGAAATCCCCATGAGCTGCTTGGTTATTGGAAGCAGGGGTCTTGGCAAACTCAAGAGGGTGCTGTTAGGTAGCGTCAGCGACTACGTCGTGAACAACGCCACTTGCCCAGTCACAGTTGTCAAGACAGCCGATGGTTGATCCTATTGTCATAAATATCCATGTGTTATATAGTCTGCTTAAATCTTTGTCCATCTATCTGAAACATATTGAACCACCATGCAGTGTAATTGTAATAATAAACGAAGTCAACTGAAGACGCTCAGTTGTACTTTGTGCTTGCACTCTCTGAGCCTGACTATGAAATGGATCCTGC ] [+] EMBL AU166753 [ AGCGAGAGCGAGGTGAGCAGCGAGCATGGCGGGCGAGGCGGCGGCGGCGGAGCGGTGGGTGGGGGCCGGCGGTGGACTTCTCGGAGGGGAGCCGCGCGGCGCTGCGGTGGGCGGCGGACAACCTGCTCCGCGCCGGCGACCACCTCATCCTCCTCCACGTCCTCAAGGACCCCGACTACGAGCAGGGCGAGACCCTCCTCTGGGAGGCCACCGGCTCCCCATTGATTCCCCTCTCGGATTTCTCTGAACCTACAATTGCAAAGAAATATGGAGCAAAGCCTGATGCCGAAACATTGGACATGCTTAATACTGTGGCCAGGCAGAAGGAGGTTGTGGTGGTTTTCAAAGTCCTTTGGGGAGATCCCCGTGAGAAGCTATGCCAAGCCATCAACGAAATCCCCATGAGCTGCTTGGTTATTGGAAGCAGGGGTC ] [+] EMBL AU166754 [ TGCCGAAACATTGGACATGCTTAATACTGTGGCCAGGCAGAAGGAGGTTGTGGTGGTTTTCAAAGTCCTTTGGGGAGATCCCCGTGAGAAGCTATGCCAAGCCATCAACGAAATCCCCATGAGCTGCTTGGTTATTGGAAGCAGGGGTCTTGGCAAACTCAAGAGGGTGCTGTTAGGTAGCGTCAGCGACTACGTCGTGAACAACGCCACTTGCCCAGTCACAGTTGTCAAGACAGCCGATGGTTGATCCTATTGTCATAAATATCCATGTGTTATATAGTCTGCTTAAATCTTTGTCCATCTATCTGAAACATATTGAACCACCATGCAGTGTAATTGTAATAATAAACGAAGTCAACTGAAGACGCTCAGTTGTACTTTGTGCTTGCACTCTCTGAGCCTGACTATGAAATGGATCCTGCTGTTTTTCTTAAAAAAAA] [+] EMBL CF326849 [ GTACTTTGTGCTTGCACTCTCTGAGCCTGACTATGAAATGGATCCTGCTGTTTTTCTTAAAAA ] [-] EMBL CF326848 [ TACTTTGTGCTTGCACTCTCTGAGCCTGACTATGAAATGGATCCTGCTGTTTTTCTTAAAAAA ] consensusID : consensus_10520#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 213 fasta sequence [CCCAGTCACAGTTGTCAAGACAGCCGATGGTTGATCCTATTGTCATAAATATCCATGTGTTATATAGTCTGCTTAAATCTTTGTCCATCTATCTGAAACATATTGAACCACCATGCAGTGTAATTGTAATAATAAACGAAGTCAACTGAAGACGCTCAGTTGTACTTTGTGCTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU078669 [CCCAGTCACAGTTGTCAAGACAGCCGATGGTTGATCCTATTGTCATAAATATCCATGTGTTATATAGTCTGCTTAAATCTTTGTCCATCTATCTGAAACATATTGAACCACCATGCAGTGTAATTGTAATAATAAACGAAGTCAACTGAAGACGCTCAGTTGTACTTTGTGCTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10520#0 CCACAAGCCAAGAAGCTGCAAGAGCAAGCCAAGCCAAGCCAAGAACGAAGCAGCAGCGAG 60 consensus_10520#1 ------------------------------------------------------------ consensus_10520#0 AGCGAGGTGAGCAGCGAGCATGGCGGGCGAGGCGGCGGCGGCGGAGCGGTGGGTGGGGGC 120 consensus_10520#1 ------------------------------------------------------------ consensus_10520#0 GGCGGTGGACTTCTCGGAGGGGAGCCGCGCGGCGCTGCGGTGGGCGGCGGACAACCTGCT 180 consensus_10520#1 ------------------------------------------------------------ consensus_10520#0 CCGCGCCGGCGACCACCTCATCCTCCTCCACGTCCTCAAGGACCCCGACTACGAGCAGGG 240 consensus_10520#1 ------------------------------------------------------------ consensus_10520#0 CGAGACCCTCCTCTGGGAGGCCACCGGCTCCCCATTGATTCCCCTCTCGGATTTCTCTGA 300 consensus_10520#1 ------------------------------------------------------------ consensus_10520#0 ACCTACAATTGCAAAGAAATATGGAGCAAAGCCTGATGCCGAAACATTGGACATGCTTAA 360 consensus_10520#1 ------------------------------------------------------------ consensus_10520#0 TACTGTGGCCAGGCAGAAGGAGGTTGTGGTGGTTTTCAAAGTCCTTTGGGGAGATCCCCG 420 consensus_10520#1 ------------------------------------------------------------ consensus_10520#0 TGAGAAGCTATGCCAAGCCATCAACGAAATCCCCATGAGCTGCTTGGTTATTGGAAGCAG 480 consensus_10520#1 ------------------------------------------------------------ consensus_10520#0 GGGTCTTGGCAAACTCAAGAGGGTGCTGTTAGGTAGCGTCAGCGACTACGTCGTGAACAA 540 consensus_10520#1 ------------------------------------------------------------ consensus_10520#0 CGCCACTTGCCCAGTCACAGTTGTCAAGACAGCCGATGGTTGATCCTATTGTCATAAATA 600 consensus_10520#1 ---------CCCAGTCACAGTTGTCAAGACAGCCGATGGTTGATCCTATTGTCATAAATA 51 *************************************************** consensus_10520#0 TCCATGTGTTATATAGTCTGCTTAAATCTTTGTCCATCTATCTGAAACATATTGAACCAC 660 consensus_10520#1 TCCATGTGTTATATAGTCTGCTTAAATCTTTGTCCATCTATCTGAAACATATTGAACCAC 111 ************************************************************ consensus_10520#0 CATGCAGTGTAATTGTAATAATAAACGAAGTCAACTGAAGACGCTCAGTTGTACTTTGTG 720 consensus_10520#1 CATGCAGTGTAATTGTAATAATAAACGAAGTCAACTGAAGACGCTCAGTTGTACTTTGTG 171 ************************************************************ consensus_10520#0 CTTGCACTCTCTGAGCCTGACTATGAAATGGATCCTGCTGTTTTTCTTAAAAAAAA 776 consensus_10520#1 CTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------AAAAAAAA 213 ****** * * * *** * ******** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||