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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10526#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 935 fasta sequence
[GCTCCCCACACGTTTTCTTCTCCCCCTCCACATCTCCCCTCTCGCCGCCGCCGCCGCCGCATNCCGTTCAGGGACTTCTCCGCCGGCGCCATGGCTGCCGCTGCAAGGTTCTTGGCGGTCTTGCTCCTCGTTCTTGCTGTCGCGGCGGCGTCTTCCGCGGCGGCGTCGTTNGCTGGCGGCGGCGACCG-CACCTGCAGCTGGGGATGCTGTCCACCGGCGGCGAGTNTCGGGGGCACGGTGGGGGACTGCCTTGAAGGGGGAGACGTCGACGGCGTTATGATGAGCTATCTTTCTTCCTCTGCCTCGTGATTCTCACTCTTTAACTTCTTCTTGCTACGGCTACCTTATTTCACTTTTTTCTTCCTTTTGACATCTTTCCTTGTCATTTTCTCTTACCTCAGCATTGTCATTATATTCTCTTACTCAATCTCAACCTCCAATTTACGTTTCTCGATTTCGATTTACACTTCTAATTGTGATATTCTTTCTCTTTTCTATATTTCTATCTCGCCTTTCTATCCTCGCCGTCCTATAAGATATTTTACAGCCTACCCTTTTTATTTTTTCCACGCTTACCATTCTATCTAATATCAATTATCTCTTTCACTCTTATTGTATATCTCGCACTTTCTGCTCTGGCTTATATCCATCTTCTCTAGCTTCTGTTTTTCTCTCTATCTGCTATCCTTCAATTCTTTTTTTACTTGTTGATCCTTTTTTATCGGCATACTGCGTGCGTAATGTAAACTTGTATGATATTTTCACTCTCTTAATCTAGCATCTCATTTATCTGTTTTTCGTTCGTCCTGTCTTTCCACCATACATTTATATACTCTACTCCATTTATCTGTGCTCCACCTTCGTCTTCCTTCCTGAAACTTTCTAGTTTCTTCCCGTCTGTCTAATATGATTATTCTAACTCCTGATGCACTGCG]
[+] EMBL C74732 [GCTCCCCACACGTTTTCTTCTCCCCCTCCACATCTCCCCTCTCGCCGCCGCCGCCGCCGCATNCCGTTCAGGGACTTCTCCGCCGGCGCCATGGCTGCCGCTGCAAGGTTCTTGGCGGTCTTGCTCCTCGTTCTTGCTGTCGCGGCGGCGTCTTCCGCGGCGGCGTCGTTNGCTGGCGGCGGCGACCG CACCTGCAGCTGGGGATGCTGTCCACCGGCGGCGAGTNTCGGGGGCACGGTGGGGGACTGCCTTGAAGGGGGAGACGTCGACGGCG ]
[+] EMBL BE040595 [ CCGCCGCCGCCGCCGCATTCCGTTCAGGGACTTCTCCGCCGGCGCCATGGCTGCCGCTGCAAGGTTCTTGGCGGTCTTGCTCCTCGTTCTTGCTGTCGCGGCGGCGTCTTCCGCGGCGGCGTCGTTGGCTGGCGGCGGCGACCGCCACCTGCAGCTGGGGATGCTGTCCACCGGCGGCGAGT GCCGGGGCACGGTGGGGGAGTGCCTTGAGGGGGGAGACGTTAAC TCGTTATGATGAGCTATCTTTCTTCCTCTGCCTCGTGATTCTCACTCTTTAACTTCTTCTTGCTACGGCTACCTTATTTCACTTTTTTCTTCCTTTTGACATCTTTCCTTGTCATTTTCTCTTACCTCAGCATTGTCATTATATTCTCTTACTCAATCTCAACCTCCAATTTACGTTTCTCGATTTCGATTTACACTTCTAATTGTGATATTCTTTCTCTTTTCTATATTTCTATCTCGCCTTTCTATCCTCGCCGTCCTATAAGATATTTTACAGCCTACCCTTTTTATTTTTTCCACGCTTACCATTCTATCTAATATCAATTATCTCTTTCACTCTTATTGTATATCTCGCACTTTCTGCTCTGGCTTATATCCATCTTCTCTAGCTTCTGTTTTTCTCTCTATCTGCTATCCTTCAATTCTTTTTTTACTTGTTGATCCTTTTTTATCGGCATACTGCGTGCGTAATGTAAACTTGTATGATATTTTCACTCTCTTAATCTAGCATCTCATTTATCTGTTTTTCGTTCGTCCTGTCTTTCCACCATACATTTATATACTCTACTCCATTTATCTGTGCTCCACCTTCGTCTTCCTTCCTGAAACTTTCTAGTTTCTTCCCGTCTGTCTAATATGATTATTCTAACTCCTGATGCACTGCG]
consensusID : consensus_10526#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 879 fasta sequence
[TCTCTCTTCTCCACCACCACCTCCATCTCGCAGTCGCAGTGCCAGCTAAGGCCTTGTACAGGGCTTCGCTCCCCACACGTTTTCTTCTCCCCCTCCACATCTCCCCTCTCGCCGCCGCCGCCGCCGCATTCCGTTCAGGGACTTCTCCGCCGGCGCCATGGCTGCCGCTGCAAGGTTCTTGGCGGTCTTGCTCCTCGTTCTTGCTGTCGCGGCGGCGTCTTCCGCGGCGGCGTCGTTGGCTGGCGGCGGCGACCGCCACCTGCAGCTGGGGATGCTGTCCACCGGCGGCGAGTGCCGGGGCACGGTGGGGGAGTGCCTTGAGGGGGGAGACGTCGACGGCGAGGAGGGGGAGCTCGGGTCGGCGTCCGGCGAGGCGCACCGCCGCGTGCTCGCCGGGAGAGGGTACATCAGCTACCAGTCGCTGCGCCGCGACAGCGTGCCGTGCTCTCGCCGCGGCGCCAGCTACTACAACTGTCGCCCCGGCGCCTCCGCCAACCCCTACCACCGCGGCTGCTCCCGCAT-CACCCGCTGCCGCGGCTGATCTCCTCCTCCTCCTCCTCCTCCTCCTGCGCCGCCGCCGCTGGATCCGCCGGAGAAGATGGCATCGTCGTCGCCAGGTTAAAATACAAAAAAAAAGAGAGGAAAAAACAAAATAATCGAGCTGTTGTTCTTGTGTTCTTGCAGTGCCACTACTCCTACCTCTACTATTTATTACTATTAGCTACTACTATTAATTAATATATTCCTTTGTTTGATTTGCTGCTGCTAATGATGCTGCTGTTGTATTTGGGATCTTATTGTTTGTGCTTTGTAAAGTAAGAGAGATTTGTGCCCCACTATGGCTGGCTTAATTATCAAGAGATATATATTCTTTCTTAT]
[+] EMBL AK103420 [TCTCTCTTCTCCACCACCACCTCCATCTCGCAGTCGCAGTGCCAGCTAAGGCCTTGTACAGGGCTTCGCTCCCCACACGTTTTCTTCTCCCCCTCCACATCTCCCCTCTCGCCGCCGCCGCCGCCGCATTCCGTTCAGGGACTTCTCCGCCGGCGCCATGGCTGCCGCTGCAAGGTTCTTGGCGGTCTTGCTCCTCGTTCTTGCTGTCGCGGCGGCGTCTTCCGCGGCGGCGTCGTTGGCTGGCGGCGGCGACCGCCACCTGCAGCTGGGGATGCTGTCCACCGGCGGCGAGTGCCGGGGCACGGTGGGGGAGTGCCTTGAGGGGGGAGACGTCGACGGCGAGGAGGGGGAGCTCGGGTCGGCGTCCGGCGAGGCGCACCGCCGCGTGCTCGCCGGGAGAGGGTACATCAGCTACCAGTCGCTGCGCCGCGACAGCGTGCCGTGCTCTCGCCGCGGCGCCAGCTACTACAACTGTCGCCCCGGCGCCTCCGCCAACCCCTACCACCGCGGCTGCTCCCGCAT CACCCGCTGCCGCGGCTGATCTCCTCCTCCTCCTCCTCCTCCTCCTGCGCCGCCGCCGCTGGATCCGCCGGAGAAGATGGCATCGTCGTCGCCAGGTTAAAATACAAAAAAAAAGAGAGGAAAAAACAAAATAATCGAGCTGTTGTTCTTGTGTTCTTGCAGTGCCACTACTCCTACCTCTACTATTTATTACTATTAGCTACTACTATTAATTAATATATTCCTTTGTTTGATTTGCTGCTGCTAATGATGCTGCTGTTGTATTTGGGATCTTATTGTTTGTGCTTTGTAAAGTAAGAGAGATTTGTGCCCCACTATGGCTGGCTTAATTATCAAGAGATATATATTCTTTCTTAT]
[+] EMBL AU029368 [ GCAGTGCCAGCTAAGGCCTTGTACAGGGCTTCGCTCCCCACACGTTTTCTTCTCCCCCTCCACATCTCCCCTCTCGCCGCAGNAGCCGCCGCATTCCGTTCAGGGACTTCTCCGCCGGCGCCATGGCTGCCGCTGCAAGGTTCTTGGCGGTCTTGCTCCTCGTTCTTGCTGTCGCGGCGGCGTCTTCCGCGGCGGCGTCGTTGGCTGGCGGCGGCGACCGCCACCTGCAGCTGGGGATGCTGTCCACCGGCGGCGAGTGCCGGGGCACGGTGGG ]
[+] EMBL BE040758 [ TTCTTGCTGTCGCGGCGGCGTCTTCCGCGGCGGCGTCGTTGGCTGGCGGCGGCGACCGCCACCTGCAGCTGGGGATGCTGTCCACCGGCGGCGAGTGCCGGGGCACGGTGGGGGAGTGCCTTGAGGGGGGAGACGTCGACGGCGAGGAGGGGGAGCTCGGGTCGGCGTCCGGCGAGGCGCACCGCCGCGTGCTCGCCGGGAGAGGGTACATCAGCTACCAGTCGCTGCGCCGCGACAGCGTGCCGTGCTCTCGCCGCGGCGCCAGCTACTACAACTGTCGCCCCGGCGCCTCCGTCAACCCCTACCACCGCGGCTGCTCCCGCAT CACCCGCTGCCGCGGCTGATCT ]
[+] EMBL AU162253 [ CCACCGCGGCTGCTCCCGCATCCATCNCCTGCCGCGGNTGATCTCCTCCTCNTCCNCCCCCTCCTCCTGCGCCGCCGCCGCTGGATCCGCCGGAGAAGATGGCATCGTCGTCGCCAGGTTAAAATACAAAAAAAAAGAGAGGAAAAAACAAAATAATCGAGCTGTTGTTCTTGTGTTCTTGCAGTGCCACTACTCCTACCTCTACTATTTATTACTATTAGCTACTACTATTAATTAATATATTCCTTTGTTTGATTTGCTGCTGCTAATGATGCTGCTGTTGTATTTGGGATCTTATTGTTTGTGCTTTGTAAAGTAAGAGAGATTTGTGCCCCANTATGGNTGGCTTAAaaaaa ]
consensusID : consensus_10526#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence
[ACATCTCCCCTCTCGCCGCCGCCGCCGCCGCATTCCGTTCAGGGACTTCTCCGCCGGCGCCATGGCTGCCGCTGCAAGGTTCTTGGCGGTCTTGCTCCTCGTTCTTGCTGTCGCGGCGGCGTCTTCCGCGGCGGCGTCGTTGGCTGGCGGCGGCGACCGCCACCTGCAGCTGGGGATGCTGTCCACCGGCGGCGAGTGCCGGGGCACGGTGGGGGAGTGCCTTGAGGGGGGAGACGTCGACGGCGAGGAGGGGGAGCTCGGGTCGGCGTCCGGCGAGGCGCACCGCCGCGTGCTCGCCGGGAGAGGGTACATCAGCTACCAGTCGCTGCGCCGCGACAGCGTGCCGTGCTCTCGCCGCGGTGCCAGCTACTACAACTGTTGTCCCGGCGCCTTCGTCAACCCCTACCACCGTGGTTGCTTCCCTATCACCCGTTGCCGCGGCTGATCTCCTTCTACTCCTTCTAACTTCGCCGATCTCCATGGATCCGTCCGGAAAGATGGCATTCTCTCTTCCCGTTTAAAATGCAAAAACAAAAGAGAGGAACTAACCAAATTAACCTTATCTGTTGTCTTTTGTGTTTTTGCACTGCCACTACCTCCGACCCTCTACATTTCATTACTTTGAGCTCCCTTTTCTTAATAAAACAATTTCTTTGCTCTGATCTGCATCCGCTTAAGATGCCTCCTCTTGTNTC]
[+] EMBL BE041045 [ACATCTCCCCTCTCGCCGCCGCCGCCGCCGCATTCCGTTCAGGGACTTCTCCGCCGGCGCCATGGCTGCCGCTGCAAGGTTCTTGGCGGTCTTGCTCCTCGTTCTTGCTGTCGCGGCGGCGTCTTCCGCGGCGGCGTCGTTGGCTGGCGGCGGCGACCGCCACCTGCAGCTGGGGATGCTGTCCACCGGCGGCGAGTGCCGGGGCACGGTGGGGGAGTGCCTTGAGGGGGGAGACGTCGACGGCGAGGAGGGGGAGCTCGGGTCGGCGTCCGGCGAGGCGCACCGCCGCGTGCTCGCCGGGAGAGGGTACATCAGCTACCAGTCGCTGCGCCGCGACAGCGTGCCGTGCTCTCGCCGCGGTGCCAGCTACTACAACTGTTGTCCCGGCGCCTTCGTCAACCCCTACCACCGTGGTTGCTTCCCTATCACCCGTTGCCGCGGCTGATCTCCTTCTACTCCTTCTAACTTCGCCGATCTCCATGGATCCGTCCGGAAAGATGGCATTCTCTCTTCCCGTTTAAAATGCAAAAACAAAAGAGAGGAACTAACCAAATTAACCTTATCTGTTGTCTTTTGTGTTTTTGCACTGCCACTACCTCCGACCCTCTACATTTCATTACTTTGAGCTCCCTTTTCTTAATAAAACAATTTCTTTGCTCTGATCTGCATCCGCTTAAGATGCCTCCTCTTGTNTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10526#1 TCTCTCTTCTCCACCACCACCTCCATCTCGCAGTCGCAGTGCCAGCTAAGGCCTTGTACA 60
consensus_10526#2 ------------------------------------------------------------
consensus_10526#0 ------------------------------------------------------------
consensus_10526#1 GGGCTTCGCTCCCCACACGTTTTCTTCTCCCCCTCCACATCTCCCCTCTCGCCGCCGCCG 120
consensus_10526#2 ------------------------------------ACATCTCCCCTCTCGCCGCCGCCG 24
consensus_10526#0 -------GCTCCCCACACGTTTTCTTCTCCCCCTCCACATCTCCCCTCTCGCCGCCGCCG 53
************************
consensus_10526#1 CCGCCGCATTCCGTTCAGGGACTTCTCCGCCGGCGCCATGGCTGCCGCTGCAAGGTTCTT 180
consensus_10526#2 CCGCCGCATTCCGTTCAGGGACTTCTCCGCCGGCGCCATGGCTGCCGCTGCAAGGTTCTT 84
consensus_10526#0 CCGCCGCATNCCGTTCAGGGACTTCTCCGCCGGCGCCATGGCTGCCGCTGCAAGGTTCTT 113
********* **************************************************
consensus_10526#1 GGCGGTCTTGCTCCTCGTTCTTGCTGTCGCGGCGGCGTCTTCCGCGGCGGCGTCGTTGGC 240
consensus_10526#2 GGCGGTCTTGCTCCTCGTTCTTGCTGTCGCGGCGGCGTCTTCCGCGGCGGCGTCGTTGGC 144
consensus_10526#0 GGCGGTCTTGCTCCTCGTTCTTGCTGTCGCGGCGGCGTCTTCCGCGGCGGCGTCGTTNGC 173
********************************************************* **
consensus_10526#1 TGGCGGCGGCGACCGCCACCTGCAGCTGGGGATGCTGTCCACCGGCGGCGAGTGCCGGGG 300
consensus_10526#2 TGGCGGCGGCGACCGCCACCTGCAGCTGGGGATGCTGTCCACCGGCGGCGAGTGCCGGGG 204
consensus_10526#0 TGGCGGCGGCGACCGC-ACCTGCAGCTGGGGATGCTGTCCACCGGCGGCGAGTNTCGGGG 232
**************** ************************************ *****
consensus_10526#1 -CACGGTGGGGGAGTGCCTTGAGGGGGGAGACGTCGACGGCGA---GGAGGGGGAGCTCG 356
consensus_10526#2 -CACGGTGGGGGAGTGCCTTGAGGGGGGAGACGTCGACGGCGA---GGAGGGGGAGCTCG 260
consensus_10526#0 GCACGGTGGGGGACTGCCTTGAAGGGGGAGACGTCGACGGCGTTATGATGAGCTATCTTT 292
************ ******** ******************* * * * * **
consensus_10526#1 GGTCGGC-GTCCGGCGAGGCGCACCGCCGCGTGCTCGCCGGGAGAGGGTACATCAGCT-A 414
consensus_10526#2 GGTCGGC-GTCCGGCGAGGCGCACCGCCGCGTGCTCGCCGGGAGAGGGTACATCAGCT-A 318
consensus_10526#0 CTTCCTCTGCCTCGTGATTCTCACTCTTTAACTTCTTCTTGCTACGGCTACCTTATTTCA 352
** * * * * ** * *** * * ** *** * * * *
consensus_10526#1 CCAGTCGCTGCGCCGCGACAGCGTGCCGTG-------CTCTCGCCGCGGCGCCAGCTACT 467
consensus_10526#2 CCAGTCGCTGCGCCGCGACAGCGTGCCGTG-------CTCTCGCCGCGGTGCCAGCTACT 371
consensus_10526#0 CTTTTTTCTTCCTTTTGACATCTTTCCTTGTCATTTTCTCTTACCTCAGCATT-GTCATT 411
* * ** * **** * * ** ** **** ** * * * * *
consensus_10526#1 ACAA-CTGTCGCCCCGGCGCCTCCGCCAACCCCTACCACCGCGGCTGCTCCCGCATCACC 526
consensus_10526#2 ACAA-CTGTTGTCCCGGCGCCTTCGTCAACCCCTACCACCGTGGTTGCTTCCCTATCACC 430
consensus_10526#0 ATATTCTCTTACTCAATCTCAACCTCCAATTTACGTTTCTCGATTTCGATTTACACTTCT 471
* * ** * * * * * *** * * * *
consensus_10526#1 CGCTGCCGCGGCTGATCTCCTCCTCCTCCTCCTCCTCCTCCTG-----CGCCGCCGCCGC 581
consensus_10526#2 CGTTGCCGCGGCTGATCTCCTTCTACTCCTTCTAA-----CTT-----CGCCGATCTCCA 480
consensus_10526#0 AATTGTGATATTCTTTCTCTTTTCTATATTTCTATCTCGCCTTTCTATCCTCGCCGTCCT 531
** **** * * * ** ** * ** *
consensus_10526#1 TGGATCCGCCGGAGAAGATGGCATCGTCGTCGCC----AGGTTAAAATACAAAAA-AAAA 636
consensus_10526#2 TGGATCCGTCCGGAAAGATGGCATTCTCTCTTCC----CGTTTAAAATGCAAAAACAAAA 536
consensus_10526#0 ATAAGATATTTTACAGCCTACCCTTTTTATTTTTTCCACGCTTACCATTCTATCTAATAT 591
* * * * * * * *** ** * * * *
consensus_10526#1 GAGAGGAAAAAACAAAATAATCG--AGCTGTTGT-TCTTGTGTTCTTGC--AGTGCCACT 691
consensus_10526#2 GAGAGGAACTAACCAAATTAACCTTATCTGTTGTCTTTTGTGTTTTTGC--ACTGCCACT 594
consensus_10526#0 CAATTATCTCTTTCACTCTTATTGTATATCTCGCACTTTCTGCTCTGGCTTATATCCATC 651
* * * * * * ** ** * * ** * ***
consensus_10526#1 ACTCCTA--CCTCTACTATTTATTACTATTAGCTAC-TACTATTAATTAATATATTCCTT 748
consensus_10526#2 ACCTCCGACCCTCTACATTTCATTACTTTGAGCTCCCTTTTCTTAATAAAACAATTTCTT 654
consensus_10526#0 TTCTCTAG-CTTCTGTTTTTC-TCTCTATCTGCTATCCTTCAATTCTTTTTTTACTTGTT 709
* * *** ** * ** * *** * * * * **
consensus_10526#1 TG-TTTGATTTGCTGCTGCTAATGATGC-TGCTGTTGTATT-TGGGATCTTATTGTTTGT 805
consensus_10526#2 TGCTCTGATCTGCATCCGCTTAAGATGCCTCCTCTTGTNTC------------------- 695
consensus_10526#0 GATCCTTTTTTATCGGCATACTGCGTGCGTAATGTAAACTTGTATGATATTTTCACTCTC 769
* * * *** * * * *
consensus_10526#1 GCTTTGTAAAGTAAGAGAGATTTGTGCCCCACTATGGCTGGCTTAATTATCAAGAGATAT 865
consensus_10526#2 ------------------------------------------------------------
consensus_10526#0 TTAATCTAGCATCTCATTTATCTGTTTTTCGTTCGTCCTGTCTTTCCACCATACATTTAT 829
consensus_10526#1 ATATTCTTTCTTAT---------------------------------------------- 879
consensus_10526#2 ------------------------------------------------------------
consensus_10526#0 ATACTCTACTCCATTTATCTGTGCTCCACCTTCGTCTTCCTTCCTGAAACTTTCTAGTTT 889
consensus_10526#1 ----------------------------------------------
consensus_10526#2 ----------------------------------------------
consensus_10526#0 CTTCCCGTCTGTCTAATATGATTATTCTAACTCCTGATGCACTGCG 935
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||