These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1053#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [CTACGCAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATTAAAAAATTACGACATTTATAAGCAAAAACTGACTGGTAGTATTATTTTCCCATCACATCCAATCCAAAAACTTAAAAAGCCATATAAGTTCAGGCAACATATAACTGGGATTGTTTTACAGCAAAATTATAATGGGGACTCAGGAGGCAGCCAAATGACAACTTTGAAACAAAACTCAAATATTTAACGAGAACTAGCCCCCAAAAGGGGATCGATTATAGGCGCGAAGCTTTAAAACTCATAAATCCAAGGGGGAAGGGTGCTCCTCCACTCAGCTAAACCTTCAGGGAACCAAAAAGCGATCTCCTTTTTCCCGTTGTCCACGGAGTCGCTCCCATGGATGACATTCCTGCCAACTTCCACGGGATAATCAACACGGATGGGGCCGGGGGCTGCCTCCCAAGGCCTGGGGGCCC] [+] EMBL CF322088 [CTACGCAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATTAAAAAATTACGACATTTATAAGCAAAAACTGACTGGTAGTATTATTTTCCCATCACATCCAATCCAAAAACTTAAAAAGCCATATAAGTTCAGGCAACATATAACTGGGATTGTTTTACAGCAAAATTATAATGGGGACTCAGGAGGCAGCCAAATGACAACTTTGAAACAAAACTCAAATATTTAACGAGAACTAGCCCCCAAAAGGGGATCGATTATAGGCGCGAAGCTTTAAAACTCATAAATCCAAGGGGGAAGGGTGCTCCTCCACTCAGCTAAACCTTCAGGGAACCAAAAAGCGATCTCCTTTTTCCCGTTGTCCACGGAGTCGCTCCCATGGATGACATTCCTGCCAACTTCCACGGGATAATCAACACGGATGGGGCCGGGGGCTGCCTCCCAAGGCCTGGGGGCCC] consensusID : consensus_1053#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAAAAACTGACTGGTAGTTTTATTTTCCCATCACATCCAATCCAAAAACTTAAAAAGCCCTTTAAGTTCAGGCAACATATAACTGGGATTGTTTCACACCAAAATTTTAATGGGGACTCAGGGGGCCCCCAAATGACAACTTTGAAACAAAACTCAAATTTTTAACGAAAACTACCCCCCAAAAGGGGATCGATTTTTGGCGCGAAGCTTTAAAACTCATAAATCCAAGGGGGAAGGGTGCTCCTCCACTCAGCTAAACCTTTAGGGAACCAAAAAGCGATCTCCTTTTTCCCGTTGTCCACGGAGTCCCTCCCATGGATGAAATTCCTGCCAACTTCCACGGGATAATCAACACGGATGGGGCCGGGGGCTGCCTCCCAGGGCCTGGGGGCCCCAATGATC] [+] EMBL CF320785 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAAAAACTGACTGGTAGTTTTATTTTCCCATCACATCCAATCCAAAAACTTAAAAAGCCCTTTAAGTTCAGGCAACATATAACTGGGATTGTTTCACACCAAAATTTTAATGGGGACTCAGGGGGCCCCCAAATGACAACTTTGAAACAAAACTCAAATTTTTAACGAAAACTACCCCCCAAAAGGGGATCGATTTTTGGCGCGAAGCTTTAAAACTCATAAATCCAAGGGGGAAGGGTGCTCCTCCACTCAGCTAAACCTTTAGGGAACCAAAAAGCGATCTCCTTTTTCCCGTTGTCCACGGAGTCCCTCCCATGGATGAAATTCCTGCCAACTTCCACGGGATAATCAACACGGATGGGGCCGGGGGCTGCCTCCCAGGGCCTGGGGGCCCCAATGATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1053#0 CTACGCAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 consensus_1053#1 ------------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 36 ************************************ consensus_1053#0 TTTTGATTAAAAAATTACGACATTTATAAGCAAAAACTGACTGGTAGTATTATTTTCCCA 120 consensus_1053#1 TTTTTTTT--------------TTTTTTAACAAAAACTGACTGGTAGTTTTATTTTCCCA 82 **** ** *** * * ****************** *********** consensus_1053#0 TCACATCCAATCCAAAAACTTAAAAAGCCATATAAGTTCAGGCAACATATAACTGGGATT 180 consensus_1053#1 TCACATCCAATCCAAAAACTTAAAAAGCCCTTTAAGTTCAGGCAACATATAACTGGGATT 142 ***************************** * **************************** consensus_1053#0 GTTTTACAGCAAAATTATAATGGGGACTCAGGAGGCAGCCAAATGACAACTTTGAAACAA 240 consensus_1053#1 GTTTCACACCAAAATTTTAATGGGGACTCAGGGGGCCCCCAAATGACAACTTTGAAACAA 202 **** *** ******* *************** *** ********************** consensus_1053#0 AACTCAAATATTTAACGAGAACTAGCCCCCAAAAGGGGATCGATTATAGGCGCGAAGCTT 300 consensus_1053#1 AACTCAAATTTTTAACGAAAACTACCCCCCAAAAGGGGATCGATTTTTGGCGCGAAGCTT 262 ********* ******** ***** ******************** * ************ consensus_1053#0 TAAAACTCATAAATCCAAGGGGGAAGGGTGCTCCTCCACTCAGCTAAACCTTCAGGGAAC 360 consensus_1053#1 TAAAACTCATAAATCCAAGGGGGAAGGGTGCTCCTCCACTCAGCTAAACCTTTAGGGAAC 322 **************************************************** ******* consensus_1053#0 CAAAAAGCGATCTCCTTTTTCCCGTTGTCCACGGAGTCGCTCCCATGGATGACATTCCTG 420 consensus_1053#1 CAAAAAGCGATCTCCTTTTTCCCGTTGTCCACGGAGTCCCTCCCATGGATGAAATTCCTG 382 ************************************** ************* ******* consensus_1053#0 CCAACTTCCACGGGATAATCAACACGGATGGGGCCGGGGGCTGCCTCCCAAGGCCTGGGG 480 consensus_1053#1 CCAACTTCCACGGGATAATCAACACGGATGGGGCCGGGGGCTGCCTCCCAGGGCCTGGGG 442 ************************************************** ********* consensus_1053#0 GCCC-------- 484 consensus_1053#1 GCCCCAATGATC 454 **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||