cluster # 1053

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Oryza sativa
cluster # 1053 cluster # 1053 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1053#0 length = 484 sequences # 1

consensus_1053#1 length = 454 sequences # 1

consensusID : consensus_1053#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 484
fasta sequence

                              [CTACGCAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATTAAAAAATTACGACATTTATAAGCAAAAACTGACTGGTAGTATTATTTTCCCATCACATCCAATCCAAAAACTTAAAAAGCCATATAAGTTCAGGCAACATATAACTGGGATTGTTTTACAGCAAAATTATAATGGGGACTCAGGAGGCAGCCAAATGACAACTTTGAAACAAAACTCAAATATTTAACGAGAACTAGCCCCCAAAAGGGGATCGATTATAGGCGCGAAGCTTTAAAACTCATAAATCCAAGGGGGAAGGGTGCTCCTCCACTCAGCTAAACCTTCAGGGAACCAAAAAGCGATCTCCTTTTTCCCGTTGTCCACGGAGTCGCTCCCATGGATGACATTCCTGCCAACTTCCACGGGATAATCAACACGGATGGGGCCGGGGGCTGCCTCCCAAGGCCTGGGGGCCC]

[+] EMBL CF322088             [CTACGCAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATTAAAAAATTACGACATTTATAAGCAAAAACTGACTGGTAGTATTATTTTCCCATCACATCCAATCCAAAAACTTAAAAAGCCATATAAGTTCAGGCAACATATAACTGGGATTGTTTTACAGCAAAATTATAATGGGGACTCAGGAGGCAGCCAAATGACAACTTTGAAACAAAACTCAAATATTTAACGAGAACTAGCCCCCAAAAGGGGATCGATTATAGGCGCGAAGCTTTAAAACTCATAAATCCAAGGGGGAAGGGTGCTCCTCCACTCAGCTAAACCTTCAGGGAACCAAAAAGCGATCTCCTTTTTCCCGTTGTCCACGGAGTCGCTCCCATGGATGACATTCCTGCCAACTTCCACGGGATAATCAACACGGATGGGGCCGGGGGCTGCCTCCCAAGGCCTGGGGGCCC]




>consensus_1053#0
CTACGCAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTGATTAAAAAATTACGACATTTATAAGCAAAAACTGACTGGTAGTATTATTTTCCCA
TCACATCCAATCCAAAAACTTAAAAAGCCATATAAGTTCAGGCAACATATAACTGGGATT
GTTTTACAGCAAAATTATAATGGGGACTCAGGAGGCAGCCAAATGACAACTTTGAAACAA
AACTCAAATATTTAACGAGAACTAGCCCCCAAAAGGGGATCGATTATAGGCGCGAAGCTT
TAAAACTCATAAATCCAAGGGGGAAGGGTGCTCCTCCACTCAGCTAAACCTTCAGGGAAC
CAAAAAGCGATCTCCTTTTTCCCGTTGTCCACGGAGTCGCTCCCATGGATGACATTCCTG
CCAACTTCCACGGGATAATCAACACGGATGGGGCCGGGGGCTGCCTCCCAAGGCCTGGGG
GCCC

consensusID : consensus_1053#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAAAAACTGACTGGTAGTTTTATTTTCCCATCACATCCAATCCAAAAACTTAAAAAGCCCTTTAAGTTCAGGCAACATATAACTGGGATTGTTTCACACCAAAATTTTAATGGGGACTCAGGGGGCCCCCAAATGACAACTTTGAAACAAAACTCAAATTTTTAACGAAAACTACCCCCCAAAAGGGGATCGATTTTTGGCGCGAAGCTTTAAAACTCATAAATCCAAGGGGGAAGGGTGCTCCTCCACTCAGCTAAACCTTTAGGGAACCAAAAAGCGATCTCCTTTTTCCCGTTGTCCACGGAGTCCCTCCCATGGATGAAATTCCTGCCAACTTCCACGGGATAATCAACACGGATGGGGCCGGGGGCTGCCTCCCAGGGCCTGGGGGCCCCAATGATC]

[+] EMBL CF320785             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAAAAACTGACTGGTAGTTTTATTTTCCCATCACATCCAATCCAAAAACTTAAAAAGCCCTTTAAGTTCAGGCAACATATAACTGGGATTGTTTCACACCAAAATTTTAATGGGGACTCAGGGGGCCCCCAAATGACAACTTTGAAACAAAACTCAAATTTTTAACGAAAACTACCCCCCAAAAGGGGATCGATTTTTGGCGCGAAGCTTTAAAACTCATAAATCCAAGGGGGAAGGGTGCTCCTCCACTCAGCTAAACCTTTAGGGAACCAAAAAGCGATCTCCTTTTTCCCGTTGTCCACGGAGTCCCTCCCATGGATGAAATTCCTGCCAACTTCCACGGGATAATCAACACGGATGGGGCCGGGGGCTGCCTCCCAGGGCCTGGGGGCCCCAATGATC]




>consensus_1053#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAAAAACT
GACTGGTAGTTTTATTTTCCCATCACATCCAATCCAAAAACTTAAAAAGCCCTTTAAGTT
CAGGCAACATATAACTGGGATTGTTTCACACCAAAATTTTAATGGGGACTCAGGGGGCCC
CCAAATGACAACTTTGAAACAAAACTCAAATTTTTAACGAAAACTACCCCCCAAAAGGGG
ATCGATTTTTGGCGCGAAGCTTTAAAACTCATAAATCCAAGGGGGAAGGGTGCTCCTCCA
CTCAGCTAAACCTTTAGGGAACCAAAAAGCGATCTCCTTTTTCCCGTTGTCCACGGAGTC
CCTCCCATGGATGAAATTCCTGCCAACTTCCACGGGATAATCAACACGGATGGGGCCGGG
GGCTGCCTCCCAGGGCCTGGGGGCCCCAATGATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1053#0      CTACGCAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_1053#1      ------------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 36
                                              ************************************

consensus_1053#0      TTTTGATTAAAAAATTACGACATTTATAAGCAAAAACTGACTGGTAGTATTATTTTCCCA 120
consensus_1053#1      TTTTTTTT--------------TTTTTTAACAAAAACTGACTGGTAGTTTTATTTTCCCA 82
                      ****  **              *** * * ****************** ***********

consensus_1053#0      TCACATCCAATCCAAAAACTTAAAAAGCCATATAAGTTCAGGCAACATATAACTGGGATT 180
consensus_1053#1      TCACATCCAATCCAAAAACTTAAAAAGCCCTTTAAGTTCAGGCAACATATAACTGGGATT 142
                      ***************************** * ****************************

consensus_1053#0      GTTTTACAGCAAAATTATAATGGGGACTCAGGAGGCAGCCAAATGACAACTTTGAAACAA 240
consensus_1053#1      GTTTCACACCAAAATTTTAATGGGGACTCAGGGGGCCCCCAAATGACAACTTTGAAACAA 202
                      **** *** ******* *************** ***  **********************

consensus_1053#0      AACTCAAATATTTAACGAGAACTAGCCCCCAAAAGGGGATCGATTATAGGCGCGAAGCTT 300
consensus_1053#1      AACTCAAATTTTTAACGAAAACTACCCCCCAAAAGGGGATCGATTTTTGGCGCGAAGCTT 262
                      ********* ******** ***** ******************** * ************

consensus_1053#0      TAAAACTCATAAATCCAAGGGGGAAGGGTGCTCCTCCACTCAGCTAAACCTTCAGGGAAC 360
consensus_1053#1      TAAAACTCATAAATCCAAGGGGGAAGGGTGCTCCTCCACTCAGCTAAACCTTTAGGGAAC 322
                      **************************************************** *******

consensus_1053#0      CAAAAAGCGATCTCCTTTTTCCCGTTGTCCACGGAGTCGCTCCCATGGATGACATTCCTG 420
consensus_1053#1      CAAAAAGCGATCTCCTTTTTCCCGTTGTCCACGGAGTCCCTCCCATGGATGAAATTCCTG 382
                      ************************************** ************* *******

consensus_1053#0      CCAACTTCCACGGGATAATCAACACGGATGGGGCCGGGGGCTGCCTCCCAAGGCCTGGGG 480
consensus_1053#1      CCAACTTCCACGGGATAATCAACACGGATGGGGCCGGGGGCTGCCTCCCAGGGCCTGGGG 442
                      ************************************************** *********

consensus_1053#0      GCCC-------- 484
consensus_1053#1      GCCCCAATGATC 454
                      ****