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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10530#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1181 fasta sequence
[CCTTAGCCCTCGAAGGCCTCGAGCCCTCCCCTACCTTGTTCTACCTCCTCCCATGGAGGTAGAACAAGTTCTATCTATCACCTCCAACCCCAAGGTAGACAGTATCACCAATGGCGACAATGTGATCATCATCCCTAGTGTGAGCACGGAGGAGAAGGAGCACATCAATGGAGCTGCAGAGACAAATCATGTTGTGATGATCACCGC-TGCTTCCATGGACAGAACCGACGGCGACGACAGGACGATGAAGGAGGAGGAGACGGACGGCATCGCCATCGCCAGGAGCGCCTCCTCCAACGGAAGCCGGCAGCAAGAC-AAGAAGCGGGGCGCG-TTCGGCCTCTTCCGGGCGATG-TTCATGTCCTTCAACGGCAGCGCCAGCA-TCAAGAAGAGGGCCGCCGCCGCCGCCGCCACCATGGGCT-ATCAGAAGAAGGCCGAGGCGGCCGGCGGCGGCGCGGCGGCTGACGTGGAGAGGTCGTCCAGCGACGTCGCGTCGTGGAAGAACCTCGTCGACGGCATGCGCCCGCTCCGCCTCCACGGCCACCTGGAGTACTACCCGCCGCCGTCGCCGGACAGGAGCGATGGCACGAGCATGACCAGCAGCTACTCGTCCGCCCAGGACCTGCAGGAGCTTGTCAATGGCCATGGAAAAGAAGACGAGGAAGAAGAAAAGAATTCTCTGGAGACGGAGGACGGTGGATGCAGCCCGAATCCGATCGACATGCAGGCCGAGGAGTTCATCGCGAAATTCTACGAGCAATTTAGGCTGCAAAAGTCGGACTCATTCAACAACCGAGCCTATTGATCGATCTCAGTGTTTTGATCTTGAAATTAGCATTCTTCTTCTCTTCCGATGTACATGGCGGATGGGGAGCAAGAAAAATCCATTGAAATGAAGTCATGAAGAAAAGTATATACCTCAATGTCGCGTCCATAATCACATTCGCTGTTTCTTCTCCATGTAATCTCCGTCCTTCAAAGAATTAATGGTATTCGCTAGATTTCAGATTCTTGAAAAGTACATAATAGAGTCGAGAAAACAGTGCGGTCAATTACATGTAAATTACTTTTTAGTTCTTACGTATTTGCTACACATCATTGTATGAACATAGGCAATAGGCCACCACATTGTTTGAATACTGAAATGGTGACGAATAAAGTACTGAAATTGGTATTATAAAAAA]
[+] EMBL AK070629 [CCTTAGCCCTCGAGGGCCTCGAGCCCTCCCCTACCTTGTTCTACCTCCTCCCATGGAGGTAGAACAAGTTCTATCTATCACCTCCAACCCCAAGGTAGACAGTATCACCAATGGCGACAATGTGATCATCATCCCTAGTGTGAGCACGGAGGAGAAGGAGCACATCAATGGAGCTGCAGAGACAAATCATGTTGTGATGATCACCGC TGCTTCCATGGACAGAACCGACGGCGACGACAGGACGATGAAGGAGGAGGAGACGGACGGCATCGCAATCGCCAGGAGCGCCTCCTCCAACGGAAGCCGGCAGCAAGAC AAGAAGCGGGGCGCG TTCGGCCTCTTCCGGGCGATG TTCATGTCCTTCAACGGCAGCGCCAGCA TCAAGAAGAGGGCCGCCGCCGCCGCCGCCACCATGGGCT ATCAGAAGAAGGCCGAGGCGGCCGGCGGCGGCGCGGCGGCTGACGTGGAGAGGTCGTCCAGCGACGTCGCGTCGTGGAAGAACCTCGTCGACGGCATGCGCCCGCTCCGCCTCCACGGCCACCTGGAGTACTACCCGCCGCCGTCGCCGGACAGGAGCGATGGCACGAGCATGACCAGCAGCTACTCGTCCGCCCAGGACCTGCAGGAGCTTGTCAATGGCCATGGAAAAGAAGACGAGGAAGAAGAAAAGAATTCTCTGGAGACGGAGGACGGTGGATGCAGCCCGAATCCGATCGACATGCAGGCCGAGGAGTTCATCGCGAAATTCTACGAGCAATTTAGGCTGCAAAAGTCGGACTCATTCAACAACCGAGCCTATTGATCGATCTCAGTGTTTTGATCTTGAAATTAGCATTCTTCTTCTCTTCCGATGTACATGGCGGATGGGGAGCAAGAAAAATCCATTGAAATGAAGTCATGAAGAAAAGTATATACCTCAATGTCGCGTCCATAATCACATTCGCTGTTTCTTCTCCATGTAATCTCCGTCCTTCAAAGAATTAATGGTATTCGCTAGATTTCAGATT ]
[+] EMBL AU064770 [ GCCCTCGAAGGCCTCGAGCCCTCCCCTACCTTGTTCTACCTCCTCCCATGGAGGTAGAACAAGTTCTATCTATCACCTCCAACCCCAAGGTAGACAGTATCACCAATGGCGACAATGTGATCATCATCCCTAGTGTGAGCACGGAGGAGAAGGAGCACATCAATGGAGCTGCAGAGACAAATCATGTTGTGATGATCACCGCTTGCTTCCATGGACAGAACCGACGGCGACGACAGGACGATGAAGGAGGAGGAGACGGACGGCATCGCCATCGCCAGGAGCG CTTCTTCAACGGAAGCCGGCAGCAAGACAAAGAAGCGGGGCGCGTTTCGGCTTTTTCCGGGCGATGTTTCATGTCCTTCAACGGCAGCGCCAGAATTCAAGAAGAGGGCCGCCGCCGCCGCNGCCAACATTGGTTNTTCAGAAGGAGGC ]
[+] EMBL AU063795 [ GCCCTCGAAGGCCTCGAGCCCTCCCCTACNTTTTNCTACCTCCTCCCATGGAGGTAGAACAAGTTCTATCTATNACCTCCAACCCCAAGGTAGACAGTATCACCAATGGCGACANTATNATCATCATCCCTAGTGTGAGCACGGAGGAGAAGGAGCACATCANTGGAGCTGCAGAGACAAATCATGTTGTAATGATCACCGC TGCTTCCATGGACAGAACCGACGGCGACGACAGGACGATGAAGGAGGAGGAGACGGACGGCATCGNCATCGCCAGGAGCGCCTCCTCCAACGGANGCCGGCAGCAGGAC AAGAAGCGGGGCGCG TTCGGCCTCTTNCGGGCGATG TTCATGTCCT ]
[+] EMBL C71773 [ TCGAAGGCCTCGAGCCCTCCCCTACCTTNTNCTACCTCCTCCCATGGAGGTAGAACAAGTTCTATCTATCACCTCCAACCCCAAGGTAGACAGTATCACCAATGGCGACAATGTGATCATNATCCCTANTGTGAGCACGGAGGAGAAGGAGCACATCANTGGAGCTGCAGAGACAAATCATGTTGTNATGATCACCGC TGCTTCCATGGACAGAACCGACGGCGACGACAGGACGATGAAGGAGGAGGAGACGGACGGCATCGCNATCGCC ]
[+] EMBL C73407 [ TATCACCAATGGCGACAATGTNATCATNATCCCTAGTGTGAGCACGGNGGAGAAGGAGCACATCAATGGAGCTGCAGAGACAAATCATGTTGTGATGATCACCGC TGCTTCCATNGACAGAACCGTCGGCGACGACAGGACGATGAAGGAGGAGGAGACGGACGGCATCGNCATCGNCAGGAGCGCCTTCTACAACGNAAGCCGGCAGCAAGNC ANGAAGCGGGNCGCG T ]
[+] EMBL C98486 [ nCCGATCGACATGCAGNCCGAGGAGTTCATCGCGAAATTCTACGNGCAATTTAGGCTGCAAAAGTCGGACTCATTCAACACCCGAGCCTATTGATCGATCTCAGTGTTTTGATCTTGAAATTAGCATTCTTCTTCTCTTCCGATGTACATGGCGGATGGGGAGCAAGAAAAATCCATTGAAATGAAGTCATGAAGAAAAGTATATACCTCAATGTCGCGTCCATAATCACATTCGCTGTTTCTTCTCCATGTAATCTCCGTCCTTCAAAGAATTAATGGTATTCGCTAGATTTCAGATTCTTGAAAAGTACATAATAGAGTCGAGAAAACAGTGCGGTCAATTACATGTAAATTACTTTTTAGTTCTTACGTATTTGCTACACATCATTGTATGAACATAGGCAATAGGCCACCACATTGTTTGAATACTGAAATGGTGACGAATAAAGTACTGAAATTGGTATTATAAAAAA]
consensusID : consensus_10530#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence
[GGTGGATGCAGCCCGAATCCGATCGACATGCAGGCCGAGGAGTTCATCGCGAAATTNTACGAGCAATTTAGGCTGCAAAAGTNGGACTCATTCAACAACCGAGCCTATTGATCGATCTCAGTGTTTTGATCTTGAAATTAGCATTNTTNTTNTCTTCCNAATGTACATGGNGGATGGGGAGCAANAAAAATCCATTGAAATGAAGTCATGAANAAAAGTATATACCTCAATGTGGGGTCCATAATCACATTCGCTGTTTNTTCTCCATGTAATCTCCGTCCTTCAAANAATTAATGGNATTCNGCTAGATTTCNGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU182556 [GGTGGATGCAGCCCGAATCCGATCGACATGCAGGCCGAGGAGTTCATCGCGAAATTNTACGAGCAATTTAGGCTGCAAAAGTNGGACTCATTCAACAACCGAGCCTATTGATCGATCTCAGTGTTTTGATCTTGAAATTAGCATTNTTNTTNTCTTCCNAATGTACATGGNGGATGGGGAGCAANAAAAATCCATTGAAATGAAGTCATGAANAAAAGTATATACCTCAATGTGGGGTCCATAATCACATTCGCTGTTTNTTCTCCATGTAATCTCCGTCCTTCAAANAATTAATGGNATTCNGCTAGATTTCNGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10530#0 CCTTAGCCCTCGAAGGCCTCGAGCCCTCCCCTACCTTGTTCTACCTCCTCCCATGGAGGT 60
consensus_10530#1 ------------------------------------------------------------
consensus_10530#0 AGAACAAGTTCTATCTATCACCTCCAACCCCAAGGTAGACAGTATCACCAATGGCGACAA 120
consensus_10530#1 ------------------------------------------------------------
consensus_10530#0 TGTGATCATCATCCCTAGTGTGAGCACGGAGGAGAAGGAGCACATCAATGGAGCTGCAGA 180
consensus_10530#1 ------------------------------------------------------------
consensus_10530#0 GACAAATCATGTTGTGATGATCACCGCTGCTTCCATGGACAGAACCGACGGCGACGACAG 240
consensus_10530#1 ------------------------------------------------------------
consensus_10530#0 GACGATGAAGGAGGAGGAGACGGACGGCATCGCCATCGCCAGGAGCGCCTCCTCCAACGG 300
consensus_10530#1 ------------------------------------------------------------
consensus_10530#0 AAGCCGGCAGCAAGACAAGAAGCGGGGCGCGTTCGGCCTCTTCCGGGCGATGTTCATGTC 360
consensus_10530#1 ------------------------------------------------------------
consensus_10530#0 CTTCAACGGCAGCGCCAGCATCAAGAAGAGGGCCGCCGCCGCCGCCGCCACCATGGGCTA 420
consensus_10530#1 ------------------------------------------------------------
consensus_10530#0 TCAGAAGAAGGCCGAGGCGGCCGGCGGCGGCGCGGCGGCTGACGTGGAGAGGTCGTCCAG 480
consensus_10530#1 ------------------------------------------------------------
consensus_10530#0 CGACGTCGCGTCGTGGAAGAACCTCGTCGACGGCATGCGCCCGCTCCGCCTCCACGGCCA 540
consensus_10530#1 ------------------------------------------------------------
consensus_10530#0 CCTGGAGTACTACCCGCCGCCGTCGCCGGACAGGAGCGATGGCACGAGCATGACCAGCAG 600
consensus_10530#1 ------------------------------------------------------------
consensus_10530#0 CTACTCGTCCGCCCAGGACCTGCAGGAGCTTGTCAATGGCCATGGAAAAGAAGACGAGGA 660
consensus_10530#1 ------------------------------------------------------------
consensus_10530#0 AGAAGAAAAGAATTCTCTGGAGACGGAGGACGGTGGATGCAGCCCGAATCCGATCGACAT 720
consensus_10530#1 -------------------------------GGTGGATGCAGCCCGAATCCGATCGACAT 29
*****************************
consensus_10530#0 GCAGGCCGAGGAGTTCATCGCGAAATTCTACGAGCAATTTAGGCTGCAAAAGTCGGACTC 780
consensus_10530#1 GCAGGCCGAGGAGTTCATCGCGAAATTNTACGAGCAATTTAGGCTGCAAAAGTNGGACTC 89
*************************** ************************* ******
consensus_10530#0 ATTCAACAACCGAGCCTATTGATCGATCTCAGTGTTTTGATCTTGAAATTAGCATTCTTC 840
consensus_10530#1 ATTCAACAACCGAGCCTATTGATCGATCTCAGTGTTTTGATCTTGAAATTAGCATTNTTN 149
******************************************************** **
consensus_10530#0 TTCTCTTCCGA-TGTACATGGCGGATGGGGAGCAAGAAAAATCCATTGAAATGAAGTCAT 899
consensus_10530#1 TTNTCTTCCNAATGTACATGGNGGATGGGGAGCAANAAAAATCCATTGAAATGAAGTCAT 209
** ****** * ********* ************* ************************
consensus_10530#0 GAAGAAAAGTATATACCTCAATGTCGCGTCCATAATCACATTCGCTGTTTCTTCTCCATG 959
consensus_10530#1 GAANAAAAGTATATACCTCAATGTGGGGTCCATAATCACATTCGCTGTTTNTTCTCCATG 269
*** ******************** * *********************** *********
consensus_10530#0 TAATCTCCGTCCTTCAAAGAATTAATGGTATTCG-CTAGATTTCAGATTCTTGAAAAGTA 1018
consensus_10530#1 TAATCTCCGTCCTTCAAANAATTAATGGNATTCNGCTAGATTTCNGATTAAAAAAAAAAA 329
****************** ********* **** ********* **** **** *
consensus_10530#0 CATAATAGAGTCGAGAAAACAGTGCGGTCAATTACATGTAAATTACTTTTTAGTTCTTAC 1078
consensus_10530#1 AAAAAAAAAAAAAAAAAA------------------------------------------ 347
* ** * * * ***
consensus_10530#0 GTATTTGCTACACATCATTGTATGAACATAGGCAATAGGCCACCACATTGTTTGAATACT 1138
consensus_10530#1 ------------------------------------------------------------
consensus_10530#0 GAAATGGTGACGAATAAAGTACTGAAATTGGTATTATAAAAAA 1181
consensus_10530#1 -------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||