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Oryza sativa
cluster # 10538 cluster # 10538       Sequences # 7       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10538#0 length = 2011 sequences # 3  
consensus_10538#1 length = 781 sequences # 2  
consensus_10538#2 length = 771 sequences # 1  
consensus_10538#3 length = 612 sequences # 1  

consensusID : consensus_10538#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2011
fasta sequence
                              [CTTGGACTCCACCATTTCAAATCCCCTGCCTCCTCCGCCTCCGCTTCCCCCCTCACCTTCTCCGGCGATCGCCGCCGCGTCCGTACACGGCTGAGGCCTGAGGCGATGGCCGCCGCCGCCGCCTCCCAGCCTCGCAGCCACCAGCCCACCTCGCTCCGCCGCGCGCCGCCACCTTCTTCGGCCGCGGCCAAGCCAGAGCCCAATGAGAAGGCCTCCAACTCCAAGCCCGCCTCGCCCGTCCAGGCACCGTCGCCGGAGAGGACGGTGAAGAAGCTGAGGTTGGCCAAGGCGCTCACGCTTCCGGAGGCCACCTCGGTGTCGGAGGCGTGCCGGAGGATGGCGCTCAAGCGAGTGGATGCCGCGTTGCTCACTGATTCCAACGGGATGCTCTCCGGCATACTCACAGCAGAGGACATATCAGGACGGGTGATAGCAGAGGGACTCAGGCCTGACGAAACAAATGTGGCCAAAGCGATGACGCGTAACCCAGTTTTTGTTATGTCCAACTCACCAGCCATTGAAGCATTACAAAAGATGGTCAAAGGAAAGTTCAGACATCTTCCTGTAGTGGAACACGGTGAGGTAATTGCCATGCTGGACATTACCAAGTTCCTTTATGATGCAATTTCAAGAATGGAAAAGGCTGCAGAACAAGGCAGTGCAATAGCAGCTGCTATGGAAGGAGTTGAACGACAGTGGGGAAATGACTTTCCAGGTCCACATTCATTTATCGAAAATCTGCGAGACCAGCTGTTCAAGCCTTCCTTATCAACCATCATAACAGAAAATAACAGTGTTCCAGTAGTATCTCCTTCAGATCCTGTAATAGCAGCTGCCAAAAAAAATGAGAGAATACCGAGTCAACTCAGTGGTTGTCATGACAGGGAACATGTTGCTAGGAATTCTTACTTCCAAGGATTTGGTATTGCGATTAGTGGCCCAAAGTTTATCCCCAGATGTGACTCTTGTAGAAAAGGTTATGACTACAAACCCTGATTGTGCGACATTGGATACATCGATCCTTGAGGCCCTGCATTCAATGCAAGACGGGAAATATCTGCATATTCCTGTTGCCGACAAAAATGGACAGATCATCGCATGTTTGGATGCTCTACAATTAACCCATGCAGCTATTTCAATGGTTGAGGGAGCTTCTGAAGCGAACAGTATGGCAAATACTATGATGCAGAAGTTCTGGGATTCAGCTCTTGCCCTGCAGCCTGCAGAGGAATCGGATGCCCGTAGTGAAAAATCTCGAATGGCAACATCAGATAATGCTGAAGGGAAACATATACCCCCTCATGTTGGCAATTCATTCTCCTTTAAACTACAAGATAGAAAAGGGCGTATGCACAGATTCAGTTGTGTTTCAGAAAGCTTAGATGAGCTTGTTTCTGCCGTATCGTACAGACTGGGAATGGAAAAAGAGAAGATTAATCTTCTGTATGATGACGATGAAGGTGACAGGGTGGTTCTGACCACCGACGGTGACCTCAGTGCGGCAATTCAGCATGCGAGATCAGCTGGATGGAAGGTTCTGAGGCTGCATATGGATGAGCCCTGGAGCAATGGGGAGCACACCACATCGCTTGTAAATACTTCACCGGTGAAAACAGGGCGGTCATTTCTCCGGCTAGGCATCGCAGCTGGTGCAGTTGCGGTTGCCAGCATGGGGGTAATCTTCTACTTGAAACGTTCTGAACTATAATTAATTCCCACACATACATCAACACATCAACATTGTAAAGATTACTTCTTCTCCGGAAGGTGAGATGTGTTGTATACGTAGGAGACAAACACGTCAAACATCAGCAATAAGGCGTGGACTATGGTTAGAAAGAATTTCCACGTGCTAAAGCTTGTAAGATTGGATGGTGTTTCATTCAATTTTAGATTGGTTTATTTTGAGACAGATGGAGCAAAGATTTTTTTGAGGTTTTTTTTCTTGAGTTTTCTTGTTTCAGCCTTCCTACCCTTTTTGCAACCTTGTGTGATATAAATAAGGGATTCA]

[+] EMBL AK105424             [CTTGGACTCCACCATTTCAAATCCCCTGCCTCCTCCGCCTCCGCTTCCCCCCTCACCTTCTCCGGCGATCGCCGCCGCGTCCGTACACGGCTGAGGCCTGAGGCGATGGCCGCCGCCGCCGCCTCCCAGCCTCGCAGCCACCAGCCCACCTCGCTCCGCCGCGCGCCGCCACCTTCTTCGGCCGCGGCCAAGCCAGAGCCCAATGAGAAGGCCTCCAACTCCAAGCCCGCCTCGCCCGTCCAGGCACCGTCGCCGGAGAGGACGGTGAAGAAGCTGAGGTTGGCCAAGGCGCTCACGCTTCCGGAGGCCACCTCGGTGTCGGAGGCGTGCCGGAGGATGGCGCTCAAGCGAGTGGATGCCGCGTTGCTCACTGATTCCAACGGGATGCTCTCCGGCATACTCACAGCAGAGGACATATCAGGACGGGTGATAGCAGAGGGACTCAGGCCTGACGAAACAAATGTGGCCAAAGCGATGACGCGTAACCCAGTTTTTGTTATGTCCAACTCACCAGCCATTGAAGCATTACAAAAGATGGTCAAAGGAAAGTTCAGACATCTTCCTGTAGTGGAACACGGTGAGGTAATTGCCATGCTGGACATTACCAAGTTCCTTTATGATGCAATTTCAAGAATGGAAAAGGCTGCAGAACAAGGCAGTGCAATAGCAGCTGCTATGGAAGGAGTTGAACGACAGTGGGGAAATGACTTTCCAGGTCCACATTCATTTATCGAAAATCTGCGAGACCAGCTGTTCAAGCCTTCCTTATCAACCATCATAACAGAAAATAACAGTGTTCCAGTAGTATCTCCTTCAGATCCTGTAATAGCAGCTGCCAAAAAAAATGAGAGAATACCGAGTCAACTCAGTGGTTGTCATGACAGGGAACATGTTGCTAGGAATTCTTACTTCCAAGGATTTGGTATTGCGATTAGTGGCCCAAAGTTTATCCCCAGATGTGACTCTTGTAGAAAAGGTTATGACTACAAACCCTGATTGTGCGACATTGGATACATCGATCCTTGAGGCCCTGCATTCAATGCAAGACGGGAAATATCTGCATATTCCTGTTGCCGACAAAAATGGACAGATCATCGCATGTTTGGATGCTCTACAATTAACCCATGCAGCTATTTCAATGGTTGAGGGAGCTTCTGAAGCGAACAGTATGGCAAATACTATGATGCAGAAGTTCTGGGATTCAGCTCTTGCCCTGCAGCCTGCAGAGGAATCGGATGCCCGTAGTGAAAAATCTCGAATGGCAACATCAGATAATGCTGAAGGGAAACATATACCCCCTCATGTTGGCAATTCATTCTCCTTTAAACTACAAGATAGAAAAGGGCGTATGCACAGATTCAGTTGTGTTTCAGAAAGCTTAGATGAGCTTGTTTCTGCCGTATCGTACAGACTGGGAATGGAAAAAGAGAAGATTAATCTTCTGTATGATGACGATGAAGGTGACAGGGTGGTTCTGACCACCGACGGTGACCTCAGTGCGGCAATTCAGCATGCGAGATCAGCTGGATGGAAGGTTCTGAGGCTGCATATGGATGAGCCCTGGAGCAATGGGGAGCACACCACATCGCTTGTAAATACTTCACCGGTGAAAACAGGGCGGTCATTTCTCCGGCTAGGCATCGCAGCTGGTGCAGTTGCGGTTGCCAGCATGGGGGTAATCTTCTACTTGAAACGTTCTGAACTATAATTAATTCCCACACATACATCAACACATCAACATTGTAAAGATTACTTCTTCTCCGGAAGGTGAGATGTGTTGTATACGTAGGAGACAAACACGTCAAACATCAGCAATAAGGCGTGGACTATGGTTAGAAAGAATTTCCACGTGCTAAAGCTTGTAAGATTGGATGGTGTTTCATTCAATTTTAGATTGGTTTATTTTGAGACAGATGGAGCAAAGATTTTTTTGAGGTTTTTTTTCTTGAGTTTTCTTGTTTCAGCCTTCCTACCCTTTTTGCAACCTTGTGTGATATAAATAAGGGATTCA]
[+] EMBL CB632908             [                  AAATCCCCTGCCTCCTCCGCCTCCGCTTCCCCCCTCACCTTCTCCGGCGATCGCCGCCGCGTCCGTACACGGCTGGGGCCTGAGGCGATGGCCGCCGCCGCCGCCTCCCAGCCTCGCAGCCACCAGCCCACCTCGCTCCGCCGCGCGCCGCCACCTTCTTCGGCCGCGGCCAAGCCAGAGCCCAATGGGAAGGCCTCCAACTCCAAGCCCGCCTCGCCCGTCCAGGCACCGTCGCCGGAGAGGACGGTGAAGAAGCTGAGGTTGGCCAAGGCGCTCACGCTTCCGGAGGCCACCTCGGTGTCGGAGGCGTGCCGGAGGATGGCGCTCAAGCGAGTGGATGCCGCGTTGCTCACTGATTCCAACGGGATGCTCTCCGGCATACTCACAGCAGAGGACATATCAGGACGGGTGATAGCAGAGGGACTCAGGCCTGACGAAACAAATGTGGCCAAAGCGATGACGCGTAACCCAGTTTTTGTTATGTCCAACTCACCAGCCATTGAAGCATTACAAAAGATGGTCAAAGGAAAGTTCAGACATCTTCCTGTAGTGGAACACGGTGAGGTAATTGCCATGCTGGACATTACCAAGTTCCTTTATGATGCAATTTCAAGAATGGAAAAGGCTGCAGAACAAGGCAGTGCAATAGCAGCTGCTATGGAAGGAGTTGAACGACAGTGGGGAAATGACTTTCCAGGTCCACATTCATTTATCGAAAATCTGCGAGACCAGCTGTTCAAGCCTTCCTTATCAACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL C29112               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCGCATGTTTGGATGCTCTACAATTAACCCATGCAGCTATTTCAATGGTTGAGGGAGCTTCTGAAGCGAACAGTATGGCAAATACTATGATGCAGAAGTTCTGGGATTCAGCTCTTGCCCTGCAGCCTGCAGAGGAATCGGATGCCCGTAGTGAAGAATCTCGAATGGCAACATCAGATAATGCTGAAGGGAAACATATACCCCCTCATGTTGGCAATTCATTCTCCTTTAAACTACAAGATAGAAAAGGGCGTATGCACAGATTCAGTTGTGTTTCAGAAAGCTTAGATGAGCTTGTTTCTGCCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]


>consensus_10538#0 CTTGGACTCCACCATTTCAAATCCCCTGCCTCCTCCGCCTCCGCTTCCCCCCTCACCTTC TCCGGCGATCGCCGCCGCGTCCGTACACGGCTGAGGCCTGAGGCGATGGCCGCCGCCGCC GCCTCCCAGCCTCGCAGCCACCAGCCCACCTCGCTCCGCCGCGCGCCGCCACCTTCTTCG GCCGCGGCCAAGCCAGAGCCCAATGAGAAGGCCTCCAACTCCAAGCCCGCCTCGCCCGTC CAGGCACCGTCGCCGGAGAGGACGGTGAAGAAGCTGAGGTTGGCCAAGGCGCTCACGCTT CCGGAGGCCACCTCGGTGTCGGAGGCGTGCCGGAGGATGGCGCTCAAGCGAGTGGATGCC GCGTTGCTCACTGATTCCAACGGGATGCTCTCCGGCATACTCACAGCAGAGGACATATCA GGACGGGTGATAGCAGAGGGACTCAGGCCTGACGAAACAAATGTGGCCAAAGCGATGACG CGTAACCCAGTTTTTGTTATGTCCAACTCACCAGCCATTGAAGCATTACAAAAGATGGTC AAAGGAAAGTTCAGACATCTTCCTGTAGTGGAACACGGTGAGGTAATTGCCATGCTGGAC ATTACCAAGTTCCTTTATGATGCAATTTCAAGAATGGAAAAGGCTGCAGAACAAGGCAGT GCAATAGCAGCTGCTATGGAAGGAGTTGAACGACAGTGGGGAAATGACTTTCCAGGTCCA CATTCATTTATCGAAAATCTGCGAGACCAGCTGTTCAAGCCTTCCTTATCAACCATCATA ACAGAAAATAACAGTGTTCCAGTAGTATCTCCTTCAGATCCTGTAATAGCAGCTGCCAAA AAAAATGAGAGAATACCGAGTCAACTCAGTGGTTGTCATGACAGGGAACATGTTGCTAGG AATTCTTACTTCCAAGGATTTGGTATTGCGATTAGTGGCCCAAAGTTTATCCCCAGATGT GACTCTTGTAGAAAAGGTTATGACTACAAACCCTGATTGTGCGACATTGGATACATCGAT CCTTGAGGCCCTGCATTCAATGCAAGACGGGAAATATCTGCATATTCCTGTTGCCGACAA AAATGGACAGATCATCGCATGTTTGGATGCTCTACAATTAACCCATGCAGCTATTTCAAT GGTTGAGGGAGCTTCTGAAGCGAACAGTATGGCAAATACTATGATGCAGAAGTTCTGGGA TTCAGCTCTTGCCCTGCAGCCTGCAGAGGAATCGGATGCCCGTAGTGAAAAATCTCGAAT GGCAACATCAGATAATGCTGAAGGGAAACATATACCCCCTCATGTTGGCAATTCATTCTC CTTTAAACTACAAGATAGAAAAGGGCGTATGCACAGATTCAGTTGTGTTTCAGAAAGCTT AGATGAGCTTGTTTCTGCCGTATCGTACAGACTGGGAATGGAAAAAGAGAAGATTAATCT TCTGTATGATGACGATGAAGGTGACAGGGTGGTTCTGACCACCGACGGTGACCTCAGTGC GGCAATTCAGCATGCGAGATCAGCTGGATGGAAGGTTCTGAGGCTGCATATGGATGAGCC CTGGAGCAATGGGGAGCACACCACATCGCTTGTAAATACTTCACCGGTGAAAACAGGGCG GTCATTTCTCCGGCTAGGCATCGCAGCTGGTGCAGTTGCGGTTGCCAGCATGGGGGTAAT CTTCTACTTGAAACGTTCTGAACTATAATTAATTCCCACACATACATCAACACATCAACA TTGTAAAGATTACTTCTTCTCCGGAAGGTGAGATGTGTTGTATACGTAGGAGACAAACAC GTCAAACATCAGCAATAAGGCGTGGACTATGGTTAGAAAGAATTTCCACGTGCTAAAGCT TGTAAGATTGGATGGTGTTTCATTCAATTTTAGATTGGTTTATTTTGAGACAGATGGAGC AAAGATTTTTTTGAGGTTTTTTTTCTTGAGTTTTCTTGTTTCAGCCTTCCTACCCTTTTT GCAACCTTGTGTGATATAAATAAGGGATTCA



consensusID : consensus_10538#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 781
fasta sequence
                              [GGGAGCTTCTGAAGCGAACAGTATGGCAAATACTATGATGCAGAAGTTCTGGGATTCAGCTCTTGCCCTGCAGCCTGCAGAGGAATCGGATGCCCGTAGTGAAGAATCTCGAATGGCAACATCAGATAATGCTGAAGGGAAACATATACCCCCTCATGTTGGCAATTCATTCTCCTTTAAACTACAAGATAGAAAAGGGCGTATGCACAGATTCAGTTGTGTTTCAGAAAGCTTAGATGAGCTTGTTTCTGCCGTATCGTACAGACTGGGAATGGAAAAAGAGAAGATTAATCTTCTGTATGATGACGATGAAGGTGACAGGGTGGTTCTGACCACCGACGGTGACCTCAGTGCGGCAATTCAGCATGCGAGATCAGCTGGATGGAAGGTTCTGAGGCTGCATATGGATGAGCCCTGGAGCAATGGGGAGCACACCACATCGCTTGTAAATACTTCACCGGTGAAAACAGGGCGGTCATTTCTCCGGCTAGGCATCGCAGCTGGTGCAGTTGCGGTTGCCAGCATGGGGGTAATCTTCTACTTGAAACGTTCTGAACTATAATTAATTCCCACACATACATCAACACATCAACATTGTAAAGATTACTTCTTCTCCGGAAGGTGAGATGTGTTGTATACGTAGGAGACAAACACGTCAAACATCAGCAATAAGGCGTGGACTATGGTAAGAAAGAATTTCCACGTGCTAAAGCTTGTAAGATTGGATGGTGTTTCAATGAATTTTAGATTGGTTTAGATTGGTTTATTTGAAATTAAAAGA]

[-] EMBL CB635845             [GGGAGCTTCTGAAGCGAACAGTATGGCAAATACTATGATGCAGAAGTTCTGGGATTCAGCTCTTGCCCTGCAGCCTGCAGAGGAATCGGATGCCCGTAGTGAAGAATCTCGAATGGCAACATCAGATAATGCTGAAGGGAAACATATACCCCCTCATGTTGGCAATTCATTCTCCTTTAAACTACAAGATAGAAAAGGGCGTATGCACAGATTCAGTTGTGTTTCAGAAAGCTTAGATGAGCTTGTTTCTGCCGTATCGTACAGACTGGGAATGGAAAAAGAGAAGATTAATCTTCTGTATGATGACGATGAAGGTGACAGGGTGGTTCTGACCACCGACGGTGACCTCAGTGCGGCAATTCAGCATGCGAGATCAGCTGGATGGAAGGTTCTGAGGCTGCATATGGATGAGCCCTGGAGCAATGGGGAGCACACCACATCGCTTGTAAATACTTCACCGGTGAAAACAGGGCGGTCATTTCTCCGGCTAGGCATCGCAGCTGGTGCAGTTGCGGTTGCCAGCATGGGGGTAATCTTCTACTTGAAACGTTCTGAACTATAATTAATTCCCACACATACATCAACACATCAACATTGTAAAGATTACTTCTTCTCCGGAAGGTGAGATGTGTTGTATACGTAGGAGACAAACACGTCAAACATCAGCAATAAGGCGTGGACTATGGTAAGAAAGAATTTCCACGTGCTAAAGCTTGTAAGATTGGATGGTGTTTCAATGAATTTTAGATTGGTTTAGATTGGTTTATTTGAAATTAAAAGA]
[+] EMBL CA755810             [                                                   GGATTCAGCTCTTGCCCTGCAGCCTGCAGAGGAATCGGATGCCCGTAGTGAAGAATCTCGAATGGCAACATCAGATAATGCTGAAGGGAAACATATACCCCCTCATGTTGGCAATTCATTCTCCTTTAAACTACAAGATAGAAAAGGGCGTATGCACAGATTCAGTTGTGTTTCAGAAAGCTTAGATGAGCTTGTTTCTGCCGTATCGTACAGACTGGGAATGGAAAAAGAGAAGATTAATCTTCTGTATGATGACGATGAAGGTGACAGGGTGGTTCTGACCACCGACGGTGACCTCAGTGCGGCAATTCAGCATGCGAGATCAGCTGGATGGAAGGTTCTGAGGCTGCATATGGATGAGCCCTGGAGCAATGGGGAGCACACCACATCGCTTGTAAATACTTCACCGGTGAAAACAGGGCGGTCATTTCTCCGGCTAGGCATCGCAGCTGGTGCAGTTGCGGTTGCCAGCATGGGGGTAATCTTCTACTTGAAACGTTCTGAACTATAATTAATTCCCACACATACATCAACACATCAACCTTGTAAAGATTACTTCTTCTCCGGAAGGTGAGATGTGTTGTATACCTAGGAGAC AACACGT                                                                                                                             ]


>consensus_10538#1 GGGAGCTTCTGAAGCGAACAGTATGGCAAATACTATGATGCAGAAGTTCTGGGATTCAGC TCTTGCCCTGCAGCCTGCAGAGGAATCGGATGCCCGTAGTGAAGAATCTCGAATGGCAAC ATCAGATAATGCTGAAGGGAAACATATACCCCCTCATGTTGGCAATTCATTCTCCTTTAA ACTACAAGATAGAAAAGGGCGTATGCACAGATTCAGTTGTGTTTCAGAAAGCTTAGATGA GCTTGTTTCTGCCGTATCGTACAGACTGGGAATGGAAAAAGAGAAGATTAATCTTCTGTA TGATGACGATGAAGGTGACAGGGTGGTTCTGACCACCGACGGTGACCTCAGTGCGGCAAT TCAGCATGCGAGATCAGCTGGATGGAAGGTTCTGAGGCTGCATATGGATGAGCCCTGGAG CAATGGGGAGCACACCACATCGCTTGTAAATACTTCACCGGTGAAAACAGGGCGGTCATT TCTCCGGCTAGGCATCGCAGCTGGTGCAGTTGCGGTTGCCAGCATGGGGGTAATCTTCTA CTTGAAACGTTCTGAACTATAATTAATTCCCACACATACATCAACACATCAACATTGTAA AGATTACTTCTTCTCCGGAAGGTGAGATGTGTTGTATACGTAGGAGACAAACACGTCAAA CATCAGCAATAAGGCGTGGACTATGGTAAGAAAGAATTTCCACGTGCTAAAGCTTGTAAG ATTGGATGGTGTTTCAATGAATTTTAGATTGGTTTAGATTGGTTTATTTGAAATTAAAAG A



consensusID : consensus_10538#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 771
fasta sequence
                              [AATTATGATTTTCTACTTGATTGCGCCCTTCCTTTATACAGTTTCAGAAAGCTTAGATGAGCTTGTTTCTGCCGTATCGTACAGACTGGGAATGGAAAAAGAGAAGATTAATCTTCTGTATGATGACGATGAAGGTGACAGGGTGGTTCTGACCACCGACGGTGACCTCAGTGCGGCAATTCAGCATGCGAGATCAGCTGGATGGAAGGTTCTGAGGCTGCATATGGATGAGCCCTGGAGCAATGGGGAGCACACCACATCGCTTGTAAATACTTCACCGGTGAAAACAGGGCGGTCATTTCTCCGGCTAGGCATCGCAGCTGGTGCAGTTGCGGTTGCCAGCATGGGGGTAATCTTCTACTTGAAACGTTCTGAACTATAATTAATTCCCACACATACATCAACACATCAACATTGTAAAGATTACTTTTTCTCCGGAAGGTGAGATGTGTTGTATACGTAGGAGACAAACACGTCAAACATCAGCAATAAGGCGTGGACTATGGTAAGAAAGAATTTCCACGTGTTAAAGTTTGTAAGATTGGATGGTGTTTCATTCAATTTTAGATTGGTTTAGATTGGTTTATTTTGAGACAGATGGAGCAAAGATTTTTTTGAGGTTTTTTTTATTGAGTTTTCTTGTTTCAGCCTTCCTACCCTTTTTGCAACCTTGTGTGATATAAATAAGGGATTCAACCAGCTTGGAAAATTTTCTTGTACACGGAAATTGTATTCCAGTCAAAATTAGATGTGAAGCATGTGGGACTACTG]

[-] EMBL CB632909             [AATTATGATTTTCTACTTGATTGCGCCCTTCCTTTATACAGTTTCAGAAAGCTTAGATGAGCTTGTTTCTGCCGTATCGTACAGACTGGGAATGGAAAAAGAGAAGATTAATCTTCTGTATGATGACGATGAAGGTGACAGGGTGGTTCTGACCACCGACGGTGACCTCAGTGCGGCAATTCAGCATGCGAGATCAGCTGGATGGAAGGTTCTGAGGCTGCATATGGATGAGCCCTGGAGCAATGGGGAGCACACCACATCGCTTGTAAATACTTCACCGGTGAAAACAGGGCGGTCATTTCTCCGGCTAGGCATCGCAGCTGGTGCAGTTGCGGTTGCCAGCATGGGGGTAATCTTCTACTTGAAACGTTCTGAACTATAATTAATTCCCACACATACATCAACACATCAACATTGTAAAGATTACTTTTTCTCCGGAAGGTGAGATGTGTTGTATACGTAGGAGACAAACACGTCAAACATCAGCAATAAGGCGTGGACTATGGTAAGAAAGAATTTCCACGTGTTAAAGTTTGTAAGATTGGATGGTGTTTCATTCAATTTTAGATTGGTTTAGATTGGTTTATTTTGAGACAGATGGAGCAAAGATTTTTTTGAGGTTTTTTTTATTGAGTTTTCTTGTTTCAGCCTTCCTACCCTTTTTGCAACCTTGTGTGATATAAATAAGGGATTCAACCAGCTTGGAAAATTTTCTTGTACACGGAAATTGTATTCCAGTCAAAATTAGATGTGAAGCATGTGGGACTACTG]


>consensus_10538#2 AATTATGATTTTCTACTTGATTGCGCCCTTCCTTTATACAGTTTCAGAAAGCTTAGATGA GCTTGTTTCTGCCGTATCGTACAGACTGGGAATGGAAAAAGAGAAGATTAATCTTCTGTA TGATGACGATGAAGGTGACAGGGTGGTTCTGACCACCGACGGTGACCTCAGTGCGGCAAT TCAGCATGCGAGATCAGCTGGATGGAAGGTTCTGAGGCTGCATATGGATGAGCCCTGGAG CAATGGGGAGCACACCACATCGCTTGTAAATACTTCACCGGTGAAAACAGGGCGGTCATT TCTCCGGCTAGGCATCGCAGCTGGTGCAGTTGCGGTTGCCAGCATGGGGGTAATCTTCTA CTTGAAACGTTCTGAACTATAATTAATTCCCACACATACATCAACACATCAACATTGTAA AGATTACTTTTTCTCCGGAAGGTGAGATGTGTTGTATACGTAGGAGACAAACACGTCAAA CATCAGCAATAAGGCGTGGACTATGGTAAGAAAGAATTTCCACGTGTTAAAGTTTGTAAG ATTGGATGGTGTTTCATTCAATTTTAGATTGGTTTAGATTGGTTTATTTTGAGACAGATG GAGCAAAGATTTTTTTGAGGTTTTTTTTATTGAGTTTTCTTGTTTCAGCCTTCCTACCCT TTTTGCAACCTTGTGTGATATAAATAAGGGATTCAACCAGCTTGGAAAATTTTCTTGTAC ACGGAAATTGTATTCCAGTCAAAATTAGATGTGAAGCATGTGGGACTACTG



consensusID : consensus_10538#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 612
fasta sequence
                              [CGCCTCCCAGCCTCGCAGCCACCAGCCCACCTCGCTCCGCCGCGCGCCGCCACCTTCTTCGGCCGCGGCCAAGCCAGAGCCCAATGGGAAGGCCTCCAACTCCAAGCCCGCCTCGCCCGTCCAGGCACCGTAAGCGCCGCCGCCCCTCCCCTCGCGATCGCGATGGCTTCCGCCGCAAGGAAGGGCGTTCCTGGCTCCTACCTACCTTCGCCCCGTGCTGATTCATTTGGAGCTTGCGTTTTTGTGCTTGTTAATTTGGCGCGCAGGTCGCCGGAGAGGACGGTGAACAAGCTGAGGTTGGCCAAGGCGCTCACGCTTCCGGAGGTCACCTCGGTGTCAGAGGCGTGCCGGAGGATGGCGCTCAAGCGAGTGGATGCCGCGTTGATCACTGATGCCAACGGGATGCTCTCCGGCATACTCACAGCACAGGACATATCACGACGGGTGATAGCAGAGGGACTCAGGCCTGACGACACAAATGTGGCCAAAGCGATGACGCATAACCCAGTTTTTGTTATGTCCAACTCACCAGCCATTGAAGCATTACAAGAGATGGTCAAAGGAAAGTTCATACATCTTCCTGTAGTGGAACACGGGGAGGTAATTGCCATG]

[+] EMBL CB635844             [CGCCTCCCAGCCTCGCAGCCACCAGCCCACCTCGCTCCGCCGCGCGCCGCCACCTTCTTCGGCCGCGGCCAAGCCAGAGCCCAATGGGAAGGCCTCCAACTCCAAGCCCGCCTCGCCCGTCCAGGCACCGTAAGCGCCGCCGCCCCTCCCCTCGCGATCGCGATGGCTTCCGCCGCAAGGAAGGGCGTTCCTGGCTCCTACCTACCTTCGCCCCGTGCTGATTCATTTGGAGCTTGCGTTTTTGTGCTTGTTAATTTGGCGCGCAGGTCGCCGGAGAGGACGGTGAACAAGCTGAGGTTGGCCAAGGCGCTCACGCTTCCGGAGGTCACCTCGGTGTCAGAGGCGTGCCGGAGGATGGCGCTCAAGCGAGTGGATGCCGCGTTGATCACTGATGCCAACGGGATGCTCTCCGGCATACTCACAGCACAGGACATATCACGACGGGTGATAGCAGAGGGACTCAGGCCTGACGACACAAATGTGGCCAAAGCGATGACGCATAACCCAGTTTTTGTTATGTCCAACTCACCAGCCATTGAAGCATTACAAGAGATGGTCAAAGGAAAGTTCATACATCTTCCTGTAGTGGAACACGGGGAGGTAATTGCCATG]


>consensus_10538#3 CGCCTCCCAGCCTCGCAGCCACCAGCCCACCTCGCTCCGCCGCGCGCCGCCACCTTCTTC GGCCGCGGCCAAGCCAGAGCCCAATGGGAAGGCCTCCAACTCCAAGCCCGCCTCGCCCGT CCAGGCACCGTAAGCGCCGCCGCCCCTCCCCTCGCGATCGCGATGGCTTCCGCCGCAAGG AAGGGCGTTCCTGGCTCCTACCTACCTTCGCCCCGTGCTGATTCATTTGGAGCTTGCGTT TTTGTGCTTGTTAATTTGGCGCGCAGGTCGCCGGAGAGGACGGTGAACAAGCTGAGGTTG GCCAAGGCGCTCACGCTTCCGGAGGTCACCTCGGTGTCAGAGGCGTGCCGGAGGATGGCG CTCAAGCGAGTGGATGCCGCGTTGATCACTGATGCCAACGGGATGCTCTCCGGCATACTC ACAGCACAGGACATATCACGACGGGTGATAGCAGAGGGACTCAGGCCTGACGACACAAAT GTGGCCAAAGCGATGACGCATAACCCAGTTTTTGTTATGTCCAACTCACCAGCCATTGAA GCATTACAAGAGATGGTCAAAGGAAAGTTCATACATCTTCCTGTAGTGGAACACGGGGAG GTAATTGCCATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10538#1      ------------------------------------------------------------
consensus_10538#2      ------------------------------------------------------------
consensus_10538#0      CTTGGACTCCACCATTTCAAATCCCCTGCCTCCTCCGCCTCCGCTTCCCCCCTCACCTTC 60
consensus_10538#3      ------------------------------------------------------------
                                                                                   

consensus_10538#1      ------------------------------------------------------------
consensus_10538#2      ------------------------------------------------------------
consensus_10538#0      TCCGGCGATCGCCGCCGCGTCCGTACACGGCTGAGGCCTGAGGCGATGGCCGCCGCCGCC 120
consensus_10538#3      ------------------------------------------------------------
                                                                                   

consensus_10538#1      ------------------------------------------------------------
consensus_10538#2      ------------------------------------------------------------
consensus_10538#0      GCCTCCCAGCCTCGCAGCCACCAGCCCACCTCGCTCCGCCGCGCGCCGCCACCTTCTTCG 180
consensus_10538#3      ------------------------------------------------------------
                                                                                   

consensus_10538#1      ------------------------------------------------------------
consensus_10538#2      ------------------------------------------------------------
consensus_10538#0      GCCGCGGCCAAGCCAGAGCCCAATGAGAAGGCCTCCAACTCCAAGCCCGCCTCGCCCGTC 240
consensus_10538#3      ------------------------------------------------------------
                                                                                   

consensus_10538#1      ------------------------------------------------------------
consensus_10538#2      ------------------------------------------------------------
consensus_10538#0      CAGGCACCGTCGCCGGAGAGGACGGTGAAGAAGCTGAGGTTGGCCAAGGCGCTCACGCTT 300
consensus_10538#3      ------------------------------------------------------------
                                                                                   

consensus_10538#1      ------------------------------------------------------------
consensus_10538#2      ------------------------------------------------------------
consensus_10538#0      CCGGAGGCCACCTCGGTGTCGGAGGCGTGCCGGAGGATGGCGCTCAAGCGAGTGGATGCC 360
consensus_10538#3      ------------------------------------------------------------
                                                                                   

consensus_10538#1      ------------------------------------------------------------
consensus_10538#2      ------------------------------------------------------------
consensus_10538#0      GCGTTGCTCACTGATTCCAACGGGATGCTCTCCGGCATACTCACAGCAGAGGACATATCA 420
consensus_10538#3      ------------------------------------------------------------
                                                                                   

consensus_10538#1      ------------------------------------------------------------
consensus_10538#2      ------------------------------------------------------------
consensus_10538#0      GGACGGGTGATAGCAGAGGGACTCAGGCCTGACGAAACAAATGTGGCCAAAGCGATGACG 480
consensus_10538#3      ------------------------------------------------------------
                                                                                   

consensus_10538#1      ------------------------------------------------------------
consensus_10538#2      ------------------------------------------------------------
consensus_10538#0      CGTAACCCAGTTTTTGTTATGTCCAACTCACCAGCCATTGAAGCATTACAAAAGATGGTC 540
consensus_10538#3      ------------------------------------------------------------
                                                                                   

consensus_10538#1      ------------------------------------------------------------
consensus_10538#2      ------------------------------------------------------------
consensus_10538#0      AAAGGAAAGTTCAGACATCTTCCTGTAGTGGAACACGGTGAGGTAATTGCCATGCTGGAC 600
consensus_10538#3      ------------------------------------------------------------
                                                                                   

consensus_10538#1      ------------------------------------------------------------
consensus_10538#2      ------------------------------------------------------------
consensus_10538#0      ATTACCAAGTTCCTTTATGATGCAATTTCAAGAATGGAAAAGGCTGCAGAACAAGGCAGT 660
consensus_10538#3      ------------------------------------------------------------
                                                                                   

consensus_10538#1      ------------------------------------------------------------
consensus_10538#2      ------------------------------------------------------------
consensus_10538#0      GCAATAGCAGCTGCTATGGAAGGAGTTGAACGACAGTGGGGAAATGACTTTCCAGGTCCA 720
consensus_10538#3      ------------------------------------------------------------
                                                                                   

consensus_10538#1      ------------------------------------------------------------
consensus_10538#2      ------------------------------------------------------------
consensus_10538#0      CATTCATTTATCGAAAATCTGCGAGACCAGCTGTTCAAGCCTTCCTTATCAACCATCATA 780
consensus_10538#3      ------------------------------------------------------------
                                                                                   

consensus_10538#1      ------------------------------------------------------------
consensus_10538#2      ------------------------------------------------------------
consensus_10538#0      ACAGAAAATAACAGTGTTCCAGTAGTATCTCCTTCAGATCCTGTAATAGCAGCTGCCAAA 840
consensus_10538#3      ------------------------------------------------------------
                                                                                   

consensus_10538#1      ------------------------------------------------------------
consensus_10538#2      ------------------------------------------------------------
consensus_10538#0      AAAAATGAGAGAATACCGAGTCAACTCAGTGGTTGTCATGACAGGGAACATGTTGCTAGG 900
consensus_10538#3      ------------------------------------------------------------
                                                                                   

consensus_10538#1      ------------------------------------------------------------
consensus_10538#2      ------------------------------------------------------------
consensus_10538#0      AATTCTTACTTCCAAGGATTTGGTATTGCGATTAGTGGCCCAAAGTTTATCCCCAGATGT 960
consensus_10538#3      ------------------------------------------------------------
                                                                                   

consensus_10538#1      ------------------------------------------------------------
consensus_10538#2      ------------------------------------------------------------
consensus_10538#0      GACTCTTGTAGAAAAGGTTATGACTACAAACCCTGATTGTGCGACATTGGATACATCGAT 1020
consensus_10538#3      ------------------------------------------------------------
                                                                                   

consensus_10538#1      ------------------------------------------------------------
consensus_10538#2      ------------------------------------------------------------
consensus_10538#0      CCTTGAGGCCCTGCATTCAATGCAAGACGGGAAATATCTGCATATTCCTGTTGCCGACAA 1080
consensus_10538#3      ------------------------------------------------------------
                                                                                   

consensus_10538#1      ------------------------------------------------------------
consensus_10538#2      ------------------------------------------------------------
consensus_10538#0      AAATGGACAGATCATCGCATGTTTGGATGCTCTACAATTAACCCATGCAGCTATTTCAAT 1140
consensus_10538#3      ------------------------------------------------------------
                                                                                   

consensus_10538#1      ------GGGAGCTTCTGAAGCGAACAGTATGGCAAATACTATGATGCAGAAGTTCTGGGA 54
consensus_10538#2      ------------------------------------------------------------
consensus_10538#0      GGTTGAGGGAGCTTCTGAAGCGAACAGTATGGCAAATACTATGATGCAGAAGTTCTGGGA 1200
consensus_10538#3      ------------------------------------------------------------
                                                                                   

consensus_10538#1      TTCAGCTCTTGCCCTGCAGCCTGCAGAGGAATCGGATGCCCGTAGTGAAGAATCTCGAAT 114
consensus_10538#2      ------------------------------------------------------------
consensus_10538#0      TTCAGCTCTTGCCCTGCAGCCTGCAGAGGAATCGGATGCCCGTAGTGAAAAATCTCGAAT 1260
consensus_10538#3      ------------------------------------------------------------
                                                                                   

consensus_10538#1      GGCAACATCAGATAATGCTGAAGGGAAACATATACCCCCTCATGTTGGCAATTCATTCTC 174
consensus_10538#2      ------------------------------------------------------------
consensus_10538#0      GGCAACATCAGATAATGCTGAAGGGAAACATATACCCCCTCATGTTGGCAATTCATTCTC 1320
consensus_10538#3      --------------------------------------CGCCTCCCAGCCTCGCAGCCAC 22
                                                                                   

consensus_10538#1      CTTTAAACTACAAGATAGAAAAGGGCGTATGCACAGATTCAGTTGTGTTTCAG--AAAGC 232
consensus_10538#2      -----AATTATGATTTTCTACTTGAT-TGCGCCCTTCCTTTATACAGTTTCAG--AAAGC 52
consensus_10538#0      CTTTAAACTACAAGATAGAAAAGGGCGTATGCACAGATTCAGTTGTGTTTCAG--AAAGC 1378
consensus_10538#3      CAGCCCACCTCGCTCCGCCGCGCGCC--GCCACCTTCTTCGGCCGCGGCCAAGCCAGAGC 80
                             *                *         *    *       *    **  * ***

consensus_10538#1      TTAGATGAGCTTGTTTCTGCCGTATCGTACAGACTGGGAATGGAAAAAGAG-AAGATTAA 291
consensus_10538#2      TTAGATGAGCTTGTTTCTGCCGTATCGTACAGACTGGGAATGGAAAAAGAG-AAGATTAA 111
consensus_10538#0      TTAGATGAGCTTGTTTCTGCCGTATCGTACAGACTGGGAATGGAAAAAGAG-AAGATTAA 1437
consensus_10538#3      CCA-ATGGGAAGGCCTCCAACTCCAAGCCCGCCTCGCCCGTCCAGGCACCGTAAGCGCCG 139
                         * *** *   *  **   *     *  *     *    *  *   *  * ***     

consensus_10538#1      TCTTCTGTATGATGACGATGAAGGTGACAGGGTGGTTCTGACCACCGACGGTGACCTCAG 351
consensus_10538#2      TCTTCTGTATGATGACGATGAAGGTGACAGGGTGGTTCTGACCACCGACGGTGACCTCAG 171
consensus_10538#0      TCTTCTGTATGATGACGATGAAGGTGACAGGGTGGTTCTGACCACCGACGGTGACCTCAG 1497
consensus_10538#3      CCGCCCCTCCCCTCGCGAT--------CGCGATGGCTTCCGCCGCAAGGAAGGGCGTTCC 191
                        *  *  *    *  ****        *  * *** *    ** *       * * *   

consensus_10538#1      TGCGGCAATTCAGCATGCGAGATCAGCTGGATGGAAGGTTCTGAGGCTGCATATGGATGA 411
consensus_10538#2      TGCGGCAATTCAGCATGCGAGATCAGCTGGATGGAAGGTTCTGAGGCTGCATATGGATGA 231
consensus_10538#0      TGCGGCAATTCAGCATGCGAGATCAGCTGGATGGAAGGTTCTGAGGCTGCATATGGATGA 1557
consensus_10538#3      TGGCTCCTACCTACCTTCGCCCCGTGCTGATTC----ATTTGGAGCTTGCGTTTTTGTGC 247
                       **   *    *  * * **      ****  *      **  ***  *** * *   ** 

consensus_10538#1      GCCCTGGAGCAATGGGGAGCACACCACATCGCTTG-TAAATACTTCACCGGTGAAAACAG 470
consensus_10538#2      GCCCTGGAGCAATGGGGAGCACACCACATCGCTTG-TAAATACTTCACCGGTGAAAACAG 290
consensus_10538#0      GCCCTGGAGCAATGGGGAGCACACCACATCGCTTG-TAAATACTTCACCGGTGAAAACAG 1616
consensus_10538#3      TTGTTAATTTGGCGCGCAGGTCGCCGGAGAGGACGGTGAACAAGCTGAGGTTGG--CCAA 305
                           *        * * **  * **  *  *   * * ** *       * **    ** 

consensus_10538#1      GGCGGTCATTTCTCCGGCTAGGCATCGCAGCTGGTGCAGTTGCGGTTGCCAGCATGGGGG 530
consensus_10538#2      GGCGGTCATTTCTCCGGCTAGGCATCGCAGCTGGTGCAGTTGCGGTTGCCAGCATGGGGG 350
consensus_10538#0      GGCGGTCATTTCTCCGGCTAGGCATCGCAGCTGGTGCAGTTGCGGTTGCCAGCATGGGGG 1676
consensus_10538#3      GGCGCTCACGCTTCCGG--AGGTCACCTCGGTGTCAGAGGCGTGCCGG--AGGATGGCGC 361
                       **** ***    *****  ***   *   * **    **  * *   *  ** **** * 

consensus_10538#1      T-AATCTTCTACTTGAAACGTTCTGAACTATAATTAATTCCCACACATACATCAACACAT 589
consensus_10538#2      T-AATCTTCTACTTGAAACGTTCTGAACTATAATTAATTCCCACACATACATCAACACAT 409
consensus_10538#0      T-AATCTTCTACTTGAAACGTTCTGAACTATAATTAATTCCCACACATACATCAACACAT 1735
consensus_10538#3      TCAAGCGAGTGGATGCCGCGTTGATCACTGATGCCAA---CGGGATGCTCTCCGGCATAC 418
                       * ** *   *   **   ****    ***      **   *   *    *  *  ** * 

consensus_10538#1      CAACATTGTAAAGATTACTTCTTCTCCGGAAGGTGAGATGTGTTGTATACGTAGGAGACA 649
consensus_10538#2      CAACATTGTAAAGATTACTTTTTCTCCGGAAGGTGAGATGTGTTGTATACGTAGGAGACA 469
consensus_10538#0      CAACATTGTAAAGATTACTTCTTCTCCGGAAGGTGAGATGTGTTGTATACGTAGGAGACA 1795
consensus_10538#3      TCACAGCACAGGACATATCACGACGGGTGATAGC-AGAGGGACTCAGGCCTGACGACACA 477
                         ***    *     **      *    **  *  *** *   *     *  * ** ***

consensus_10538#1      AACACGTCAAACATCAGCA-ATAAGGCGTGGACTATGGTAAGAAAGAATTTCCACGTGCT 708
consensus_10538#2      AACACGTCAAACATCAGCA-ATAAGGCGTGGACTATGGTAAGAAAGAATTTCCACGTGTT 528
consensus_10538#0      AACACGTCAAACATCAGCA-ATAAGGCGTGGACTATGGTTAGAAAGAATTTCCACGTGCT 1854
consensus_10538#3      AATGTGGCCAAAGCGATGACGCATAACCCAGTTTTTGTTATGTCCAACTCACCAGCCATT 537
                       **   * * **    *  *   *   *   *  * ** *  *    * *  ***     *

consensus_10538#1      AAAGC-TTGTAAGATTGGATGGTGTTTCAATGAATTTTAGATTGGTTTAGATTGGTTTAT 767
consensus_10538#2      AAAGT-TTGTAAGATTGGATGGTGTTTCATTCAATTTTAGATTGGTTTAGATTGGTTTAT 587
consensus_10538#0      AAAGC-TTGTAAGATTGGATGGTGTTTCATTCAATTTTAG----------ATTGGTTTAT 1903
consensus_10538#3      GAAGCATTACAAGA---GATGGTCAAAGGAAAGTTCATACATCTTCCTGTAGTGGAACAC 594
                        ***  **  ****   ******           *  **           * ***   * 

consensus_10538#1      TTGAAATTAAAAGA---------------------------------------------- 781
consensus_10538#2      TTTGAGACAGATGGAGCAAAGATTTTTTTGAGGTTTTTTTTATTGAGTTTTCTTGTTTCA 647
consensus_10538#0      TTTGAGACAGATGGAGCAAAGATTTTTTTGAGGTTTTTTTTCTTGAGTTTTCTTGTTTCA 1963
consensus_10538#3      GGGGAGGTAATTGCCATG------------------------------------------ 612
                           *   *   *                                               

consensus_10538#1      ------------------------------------------------------------
consensus_10538#2      GCCTTCCTACCCTTTTTGCAACCTTGTGTGATATAAATAAGGGATTCAACCAGCTTGGAA 707
consensus_10538#0      GCCTTCCTACCCTTTTTGCAACCTTGTGTGATATAAATAAGGGATTCA------------ 2011
consensus_10538#3      ------------------------------------------------------------
                                                                                   

consensus_10538#1      ------------------------------------------------------------
consensus_10538#2      AATTTTCTTGTACACGGAAATTGTATTCCAGTCAAAATTAGATGTGAAGCATGTGGGACT 767
consensus_10538#0      ------------------------------------------------------------
consensus_10538#3      ------------------------------------------------------------
                                                                                   

consensus_10538#1      ----
consensus_10538#2      ACTG 771
consensus_10538#0      ----
consensus_10538#3      ----
                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)