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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10544#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1360 fasta sequence
[TTTTTTTTTTTTTTTTTAAACACATAAGTAAATTCTTTATTTCTTCACATATACATTATACAGGGTTGTTGCATACATCA---AATGCATCTCATACATTATTCGTCTAAAATAGAAATAGGGAAAATTAAATAAAAATGTTGGGGTGATCTGGGACCACCCCTAATTGCTTTAGGAGATTTCAAATATAAGATTTAGGCAAAAGAAAAAATTTAAAGTTGCTTGATGTCACATATTTTGCAACCAAACCATTTTGGGGCACAAAATTTGTAACATTAGCCATCTCTTAGTACTTTCCAAAACTATTTATTTCTTAGGTAAACTCTGAGTTTTTGGGCAATTGAAAATCAGTCCCTAAATTCAAAGTAATCTCCATATTTTTAAAGTCTATGGTACTATAATGCAAAAGTTACAAATATCATACTTTTCACTAAATTTTTATTTAATTGCAAATCTGTGAAAAATTATGCTGAGCCTCCACCGAATAAACCATGCTTAGGTGTCAAACAGGGAGACCACTAGTAAAACCTTAGTAGGTGAGTCACCTAGTAGTCAACCATGTCCCTGTCACAAAAACCATATCAGTGTGAACTCCATCCTGACCGAGCCTCATTTTCCTCGTAGAGACCAAAACCAGTTAGCAAGAAGAACCACCATAACCAGAGAGTTAGAGAAGAAAAGAAAAATACAAGAGGGCAAAATCACCCAACATCAGGTGGAGCAGGGGCTCCAGCTCCATTTGGAGCAGGTACCCCAGCTCAAGGAGGAGACGCTGATTCAGTAGAATCAACCAACCAATAGAAGCTGCAGTAGAAGCAAAAGAGGAGTTCAACTATATATTTTCACAACCACTGAATAATCAACAAAGAGGTAAACTAGATTAAGAGCATCATCCATGGCATATAATCATGATTAGAAGTCAGATTATTTACAAATCAAGAATCTAGAGACCATATTATTTGCATTACAAGGTTACAGTGGCACACATCTAACAAATACTTCTATTGTGAGACATTATGAGAAATAGAACAGAGAAATAGAAGGGGGAAAAGGGATATGGAGTTACTGGTGAGGGTTGTGGCCGGCAGAGTTGCCATTTGAGGCATTGGCCGTCTCCACAGCGACCATCACAGGAGTTGGGTACCAATAGCCATGGAGGACAGCAATGCTCAAATTACTTGAGAGAGGAGTGGTGGTAGTAGAGGATGGAGGTGAAGCAGGACATGAGTTTGTGGGAACTAGGGGGATCAAATCACTGCAGGGGTAGCTGCTAGGGAGATCACCGGAGTGGGGCATGGCAGCCGGCCTGAGGGAGAGCGTCGGTGTTGGCGGCGCTGTTTGGGGATGGCGGCACAGGAGAAAA]
[+] EMBL CF327864 [TTTTTTTTTTTTTTTTTAAACACATAAGTAAATTCTTTATTTCTTCACATATACATTATACAGGGTTGTTGCATACATCA AATGCATCTCATACATTATTCGTCTAAAATAGAAATAGGGAAAATTAAATAAAAATGTTGGGGTGATCTGGGACCACCCCTAATTGCTTTAGGAGATTTCAAATATAAGATTTAGGCAAAAGAAAAAATTTAAAGTTGCTTGATGTCACATATTTTGCAACCAAACCATTTTGGGGCACAAAATTTGTAACATTAGCCATCTCTTAGTACTTTCCAAAACTATTTATTTCTTAGGTAAACTCTGAGTTTTTGGGCAATTGAAAATCAGTCCCTAAATTCAAAGTAATCTCCATATTTTTAAAGTCTATGGTACTATAATGCAAAAGTTACAAATATCATACTTTTCACTAAATTTTTATTTAATTGCAAATCTGTGAAAAATTATGCTGAGCCTCCACCGAATAAACCATGCTTAGGTGTCAAACAGGGAGACCACTAGTAAAACCTTAGTAGGTGAGTCACCTAGTAGTCAACCATGTCCATGTGACAAAAACCATATCAGTGTGAACCCCATCCTGACCGAGCCTCg ]
[+] EMBL CB657745 [ AGTAAATTCTTTATTTCTTCACATATACATTATACAGTGTTGTTGCATACATCAAATAATGCATCTCATACATTATTCATCTAAAATAGAAATAGTGAAAATTAAATAAAAATATTGGTGTGATCTGTGACCACACCTAATTGCTTTAGGAGATTTCAAATATAAGATTTAGGCAAAAGAGAAAATTTAGAGTTGCTTGATGTCACATATTTTGCAACCAAACCATTTCGGGGCACAAAATTAGTAACATTAGCCATCTCTTAGTAGCTTCCAAAACTATTTATTTCTTAGGTAAACTCTGAGTTTTTGGGCAATTGAAAATCAGTCCCTAAACTCAAAGTAATCTCCATATTTTTAAAGTCTATGGTACTATAATGCAAAAGTTACAAATATTATATTTTTCACTAGGTTTTTATTTAATTGCAAATCTGTGAAAAATTATGCTGAGCCTCCACCGAATAAACCATGCTTAGGTGTCAAACAGGGAGACCACCAGTAAAACCTTAGTAGGTGAGTCACCTAGTAGTCAACCATGTCCCTGTCACAAAAACCATATCAGTGTGAACTCCATCCTGACCGAGCCTCATTTTCCTCGTAGAGACCAAAACCAGTTAGCAAGAAGAACCACCATAACCAGAGAGTTAGAGAAGAAAAGAAAAATACAAGAGGGCAAAATCACCCAACATCAGGTGGAGCAGGGGCTCCAGCTCCATTTGGAGCAGGTACCCCAGCTCAAGGAGGAGACGCTGATTCAGTAGAATCAACCAACCAATAGAAGCTGCAGTAGAAGCAAAAGAGGAGTTCA ]
[-] EMBL CB657744 [ CATGTCCCTGTCACAAAAACCATATCAGTGTGAACTCCATCCTGACCGAGCCTCATTTTCCTCGTAGAGACCAAAACCAGTTAGCAAGAAGAACCACCATAACCAGAGAGTTAGAGAAGAAAAGAAAAATACAAGAGGGCAAAATCACCCAACATCAGGTGGAGCAGGGGCTCCAGCTCCATTTGGAGCAGGTACCCCAGCTCAAGGAGGAGACGCTGATTCAGTAGAATCAACCAACCAATAGAAGCTGCAGTAGAAGCAAAAGAGGAGTTCAACTATATATTTTCACAACCACTGAATAATCAACAAAGAGGTAAACTAGATTAAGAGCATCATCCATGGCATATAATCATGATTAGAAGTCAGATTATTTACAAATCAAGAATCTAGAGACCATATTATTTGCATTACAAGGTTACAGTGGCACACATCTAACAAATACTTCTATTGTGAGACATTATGAGAAATAGAACAGAGAAATAGAAGGGGGAAAAGGGATATGGAGTTACTGGTGAGGGTTGTGGCCGGCAGAGTTGCCATTTGAGGCATTGGCCGTCTCCACAGCGACCATCACAGGAGTTGGGTACCAATAGCCATGGAGGACAGCAATGCTCAAATTACTTGAGAGAGGAGTGGTGGTAGTAGAGGATGGAGGTGAAGCAGGACATGAGTTTGTGGGAACTAGGGGGATCAAATCACTGCAGGGGTAGCTGCTAGGGAGATCACCGGAGTGGGGCATGGCAGCCGGCCTGAGGGAGAGCGTCGGTGTTGGCG ]
[-] EMBL CF340578 [ GAGTTTGTGGGGACTAGGGGGATCGAATCAGTGCAGGGGTAGCTGATAGGGAGATCACCGGAGTGGGGCATGGCAGCCGGCCTGAGGGAGAGCGTCGGTGTTGGCGGCGCTGTTTGGGGATGGCGGCACAGGAGAAAA]
consensusID : consensus_10544#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 759 fasta sequence
[TTTTTTTTTTTTATCATACTTTTCACTAGATTTTTATTTAATTGCAAATCTGTGAAAAATTATGCTGAGCCTCCACCGAATAAACCATGCTTAGGTGTCAAACAGGGAGACCACCAGTAAAACCTTAGTAGGTGAGTCACCTAGTAGTCAACCATGTCCCTGTGACAAAAACCATATCAGTGTGAACTCCATCCTGACCGAGCCTCGTTTTCCTCGTAGAGACCAAAACCAGTTAGCAAGAAGAACCACCCATAACCAGAGAGTTAGAGAAGAAAAGAAAAATACAAGAGGGCAAAATCACCCAACATCA-GGTGGAGCAGGGG-CTCCAGCTCCATTAGGAGCAGGTACCCCAGCTCAAGGAGGAGACGCTGATTCAGTAGAATCAACCAACCAATAGAAGTGGTGAGGGTTGTGGCCGGCAGAGTTGCCATTTGAGGCATTGGCCGTCTCCACAGCGACCATCACAGGAGTTGGGTACCAATAGCCATGGAGGACAGCAATGCTCAAATTACTTGAGAGAGGAGTGGTGGTAGTAGAGGATGGAGGTGAAGCAGGACATGAGTTTGTGGGAACTAGGGGGATCAAATCACTGCAGGGGTAGCTGCTAGGGAGATCACCGGAGTGGGGCATGGCAGCCGGCCTGAGGGAGAGCGTCGGTGTTGGCGGCGCTGTTTGGGGATGGCGGCACAGGAGAGAAGGCGTGAAGGAGAGAAGGAGATAGCGAGAGAAGAAGATGAGAAGAAAGAAAGTGGGCTGGTT]
[+] EMBL CF282311 [TTTTTTTTTTTTATCATACTTTTCACTAGATTTTTATTTAATTGCAAATCTGTGAAAAATTATGCTGAGCCTCCACCGAATAAACCATGCTTAGGTGTCAAACAGGGAGACCACCAGTAAAACCTTAGTAGGTGAGTCACCTAGTAGTCAACCATGTCCCTGTGACAAAAACCATATCAGTGTGAACTCCATCCTGACCGAGCCTCGTTTTCCTCGTAGAGACCAAAACCAG TAGCAAGAAGAACCA CCATAACCAGAGAGTTTGAGAAGAAAAGAAAAATACAAGAGGGCAAAATCACCCAACAACAGGGTGGAGCAGGGGCCTCTAGCTCCATTAGGAACAGGTACCCCAGCTGAAGGAGGAGACGCTGATTCAGTAGAATCAACCAACCAA ]
[-] EMBL CF340580 [ CATGTCCCTGTCACAAAAACCATATCAGTGTGAACTCCATCCTGACCGAGCCTCATTTTCCTCGTAGAGACCAAAACCAGTTAGCAAGAAGAACCACCCATAACCAGAGAGTTAGAGAAGAAAAGAAAAATACAAGAGGGCAAAATCACCCAACATCA GGTGGAGCAGGGG CTCCAGCTCCATTTGGAGCAGGTACCCCAGCTCAAGGAGGAGACGCTGATTCAGTAGAATCAACCAACCAATAGAAGTGGTGAGGGTTGTGGCCGGCAGAGTTGCCATTTGAGGCATTGGCCGTCTCCACAGCGACCATCACAGGAGTTGGGTACCAATAGCCATGGAGGACAGCAATGCTCAAATTACTTGAGAGAGGAGTGGTGGTAGTAGAGGATGGAGGTGAAGCAGGACATGAGTTTGTGGGAACTAGGGGGATCAAATCACTGCAGGGGTAGCTGCTAGGGAGATCACCGGAGTGGGGCATGGCAGCCGGCCTGAGGGAGAGCGTCGGTGTTGGCGGCGCTGTTTGGGGATGGCGGCACAGGAGA ]
[-] EMBL CF327865 [ ACCCCATCCTGACCGAGCCTCGTTTTCCTCGTAGAGACCAAAACCAGTTAGCAAGAAGAACCACCCATAACCAGAGAG TGGAGAAGAAAAGAAAAATACAAGAGGGCAAACTCACCCAACATTA GGTGGAGCAGGGG CTCCAGCTCCATTAGGAGCAGGTACCCCAGCTCAAGGAGGAGACGCTGATTCAGTAGAATCAACCAACCAATAGAAGTGGTGAGGGTTGTGGCCGGCAGAGTTGCCATTTGAGGCATTGGCCGTCTCCACGGCGACCATCACAGGAGTTGAGTACCAATAGCCATGGAGGACAACAATGCTCAGATTCCTTGAGAGAGGAGAGGTGGTAGTAGAGGATGGAGGTAAAGCAGGATATGAGTTTGTGGGAACTAGGGGGATCAAATCACTGCAGGGGCAGCTGCTAGGGAGATCGCCGGAGTGGGGCGTGGCAGCCGGCCTGAGGGAGAGCGTCGGTGTTGGCGGCGCTGTTTGGGGATGGCGGCACAGGAGAGAAGGCGTGAAGGAGAGAAGGAGATAGCGAGAGAAGAAGATGAGAAGAAAGAAAGTGGGCTGGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10544#0 TTTTTTTTTTTTTTTTTAAACACATAAGTAAATTCTTTATTTCTTCACATATACATTATA 60
consensus_10544#1 ------------------------------------------------------------
consensus_10544#0 CAGGGTTGTTGCATACATCAAATGCATCTCATACATTATTCGTCTAAAATAGAAATAGGG 120
consensus_10544#1 ------------------------------------------------------------
consensus_10544#0 AAAATTAAATAAAAATGTTGGGGTGATCTGGGACCACCCCTAATTGCTTTAGGAGATTTC 180
consensus_10544#1 ------------------------------------------------------------
consensus_10544#0 AAATATAAGATTTAGGCAAAAGAAAAAATTTAAAGTTGCTTGATGTCACATATTTTGCAA 240
consensus_10544#1 ------------------------------------------------------------
consensus_10544#0 CCAAACCATTTTGGGGCACAAAATTTGTAACATTAGCCATCTCTTAGTACTTTCCAAAAC 300
consensus_10544#1 ------------------------------------------------------------
consensus_10544#0 TATTTATTTCTTAGGTAAACTCTGAGTTTTTGGGCAATTGAAAATCAGTCCCTAAATTCA 360
consensus_10544#1 ------------------------------------------------------------
consensus_10544#0 AAGTAATCTCCATATTTTTAAAGTCTATGGTACTATAATGCAAAAGTTACAAATATCATA 420
consensus_10544#1 ------------------------------------------TTTTTTTTTTTTATCATA 18
** *******
consensus_10544#0 CTTTTCACTAAATTTTTATTTAATTGCAAATCTGTGAAAAATTATGCTGAGCCTCCACCG 480
consensus_10544#1 CTTTTCACTAGATTTTTATTTAATTGCAAATCTGTGAAAAATTATGCTGAGCCTCCACCG 78
********** *************************************************
consensus_10544#0 AATAAACCATGCTTAGGTGTCAAACAGGGAGACCACTAGTAAAACCTTAGTAGGTGAGTC 540
consensus_10544#1 AATAAACCATGCTTAGGTGTCAAACAGGGAGACCACCAGTAAAACCTTAGTAGGTGAGTC 138
************************************ ***********************
consensus_10544#0 ACCTAGTAGTCAACCATGTCCCTGTCACAAAAACCATATCAGTGTGAACTCCATCCTGAC 600
consensus_10544#1 ACCTAGTAGTCAACCATGTCCCTGTGACAAAAACCATATCAGTGTGAACTCCATCCTGAC 198
************************* **********************************
consensus_10544#0 CGAGCCTCATTTTCCTCGTAGAGACCAAAACCAGTTAGCAAGAAGAACCACC-ATAACCA 659
consensus_10544#1 CGAGCCTCGTTTTCCTCGTAGAGACCAAAACCAGTTAGCAAGAAGAACCACCCATAACCA 258
******** ******************************************* *******
consensus_10544#0 GAGAGTTAGAGAAGAAAAGAAAAATACAAGAGGGCAAAATCACCCAACATCAGGTGGAGC 719
consensus_10544#1 GAGAGTTAGAGAAGAAAAGAAAAATACAAGAGGGCAAAATCACCCAACATCAGGTGGAGC 318
************************************************************
consensus_10544#0 AGGGGCTCCAGCTCCATTTGGAGCAGGTACCCCAGCTCAAGGAGGAGACGCTGATTCAGT 779
consensus_10544#1 AGGGGCTCCAGCTCCATTAGGAGCAGGTACCCCAGCTCAAGGAGGAGACGCTGATTCAGT 378
****************** *****************************************
consensus_10544#0 AGAATCAACCAACCAATAGAAGCTGCAGTAGAAGCAAAAGAGGAGTTCAACTATATATTT 839
consensus_10544#1 AGAATCAACCAACCAATAGAAG-------------------------------------- 400
**********************
consensus_10544#0 TCACAACCACTGAATAATCAACAAAGAGGTAAACTAGATTAAGAGCATCATCCATGGCAT 899
consensus_10544#1 ------------------------------------------------------------
consensus_10544#0 ATAATCATGATTAGAAGTCAGATTATTTACAAATCAAGAATCTAGAGACCATATTATTTG 959
consensus_10544#1 ------------------------------------------------------------
consensus_10544#0 CATTACAAGGTTACAGTGGCACACATCTAACAAATACTTCTATTGTGAGACATTATGAGA 1019
consensus_10544#1 ------------------------------------------------------------
consensus_10544#0 AATAGAACAGAGAAATAGAAGGGGGAAAAGGGATATGGAGTTACTGGTGAGGGTTGTGGC 1079
consensus_10544#1 --------------------------------------------TGGTGAGGGTTGTGGC 416
****************
consensus_10544#0 CGGCAGAGTTGCCATTTGAGGCATTGGCCGTCTCCACAGCGACCATCACAGGAGTTGGGT 1139
consensus_10544#1 CGGCAGAGTTGCCATTTGAGGCATTGGCCGTCTCCACAGCGACCATCACAGGAGTTGGGT 476
************************************************************
consensus_10544#0 ACCAATAGCCATGGAGGACAGCAATGCTCAAATTACTTGAGAGAGGAGTGGTGGTAGTAG 1199
consensus_10544#1 ACCAATAGCCATGGAGGACAGCAATGCTCAAATTACTTGAGAGAGGAGTGGTGGTAGTAG 536
************************************************************
consensus_10544#0 AGGATGGAGGTGAAGCAGGACATGAGTTTGTGGGAACTAGGGGGATCAAATCACTGCAGG 1259
consensus_10544#1 AGGATGGAGGTGAAGCAGGACATGAGTTTGTGGGAACTAGGGGGATCAAATCACTGCAGG 596
************************************************************
consensus_10544#0 GGTAGCTGCTAGGGAGATCACCGGAGTGGGGCATGGCAGCCGGCCTGAGGGAGAGCGTCG 1319
consensus_10544#1 GGTAGCTGCTAGGGAGATCACCGGAGTGGGGCATGGCAGCCGGCCTGAGGGAGAGCGTCG 656
************************************************************
consensus_10544#0 GTGTTGGCGGCGCTGTTTGGGGATGGCGGCACAGGAGAAAA------------------- 1360
consensus_10544#1 GTGTTGGCGGCGCTGTTTGGGGATGGCGGCACAGGAGAGAAGGCGTGAAGGAGAGAAGGA 716
************************************** **
consensus_10544#0 -------------------------------------------
consensus_10544#1 GATAGCGAGAGAAGAAGATGAGAAGAAAGAAAGTGGGCTGGTT 759
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||