These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10551#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1008 fasta sequence [CGCCGCCTCCGCCGCGTGCGAAGCTTGGAGAGTTCGAGCACGGGCATGGCGTCCTCGGGGGGAGCGGCGATCTCGGCGGGGCCCACGCCGCCGTCGGCGGCGGCGGCGTCGTCGTCGGTGGACTGGCACCTGCGGCCGCCGAACCCGAAGAACCCGGTGGTGTTCTTCGACGTGACCATCGGGTCCATCCCCGCCGGCCGCATCAAGATGGAGCTCTTCGCCGACATCGTCCCCAAGACGGCGGAGAACTTCCGGCAGTTCTGCACTGGAGAGCACAGGAAATCAGGTTTACCACAGGGATATAAGGGTTGTCAGTTCCATCGAGTGATCAAAGATTTCATGATTCAGGGAGGTGACTATATGAAGGGGGATGGTACTGGATGCACGTCAATCTATGGTACCAAATTTGATGATGAAAACTTCATTGCAAAGCATACTGGTCCTGGCCTACTTTCTATGGCAAATAGTGGGGTGAACTCTAATGGATCTCAGTTCTTTATAACTTGTGCAAAATGTGAATGGCTGGACAACAAGCATGTGGTTTTTGGGAGGGTGCTAGGGGATGGTATGCTTGCTGTGCGGAAGATCGAGAATGTTGCAACTGGACCAAACAACCGACCGAAGCTCGCATGTGTCAT-AAGCGAGTGTGGTGAGATGTAGTTT-GTA-CCTTGAGGGTGACTATTCTTGGTGCTGCTGATGTAGAAATAGACTTTGCATGGATGAAACTACTCCAGCATTGGAAGCA-CCATAAGACATAGCTGTACCAAAGTATCAATTCACCTTGAATGAGTGTCTGTCTATACACTGATGAAAGTTCAT-CCTCACTTCGTCAGTGACATCAGTTGTCACTTAAACTGTTGATTAATATTCTAAACAGGGAATATGTGTGTCTGTTCGACTTGAACCTTCGTCATGTCAAGTGGAGCTGGCATTATATTCAGCTGAACATGCTTGATGAAATGATGAGTCGATCTGTGGTTGCACCCATTTTATAAAGTATACTAAACT] [+] EMBL AK071076 [CGCCGCCTCCGCCGCGTGCGAAGCTTGGAGAGTTCGAGCACGGGCATGGCGTCCTCGGGGGGAGCGGCGATCTCGGCGGGGCCCACGCCGCCGTCGGCGGCGGCGGCGTCGTCGTCGGTGGACTGGCACCTGCGGCCGCCGAACCCGAAGAACCCGGTGGTGTTCTTCGACGTGACCATCGGGTCCATCCCCGCCGGCCGCATCAAGATGGAGCTCTTCGCCGACATCGTCCCCAAGACGGCGGAGAACTTCCGGCAGTTCTGCACTGGAGAGCACAGGAAATCAGGTTTACCACAGGGATATAAGGGTTGTCAGTTCCATCGAGTGATCAAAGATTTCATGATTCAGGGAGGTGACTATATGAAGGGGGATGGTACTGGATGCACGTCAATCTATGGTACCAAATTTGATGATGAAAACTTCATTGCAAAGCATACTGGTCCTGGCCTACTTTCTATGGCAAATAGTGGGGTGAACTCTAATGGATCTCAGTTCTTTATAACTTGTGCAAAATGTGAATGGCTGGACAACAAGCATGTGGTTTTTGGGAGGGTGCTAGGGGATGGTATGCTTGCTGTGCGGAAGATCGAGAATGTTGCAACTGGACCAAACAACCGACCGAAGCTCGCATGTGTCAT AAGCGAGTGTGGTGAGATGTAGTTT GTA CCTTGAGGGTGACTATTCTTGGTGCTGCTGATGTAGAAATAGACTTTGCATGGATGAAACTACTCCAGCATTGGAAGCA CCATAAGACATAGCTGTACCAAAGTATCAATTCACCTTGAATGAGTGTCTGTCTATACACTGATGAAAGTTCAT CCTCACTTCGTCAGTGACATCAGTTGTCACTTAAACTGTTGATTAATATTCTAAACAGGGAATATGTGTGTCTGTTCGACTTGAACCTTCGTCATGTCAAGTGGAGCTGGCATTATATTCAGCTGAACATGCTTGATGAAATGATGAGTCGATCTGTGGTTGCACCCATTTTATAAAGTATACTAAACT] [-] EMBL AU063697 [ CCGAAGCTCGCATGTGTCATAAAGCGAGTGTGGTGAGATGTAGTTTGGTACCCTTGAGGGTGACTATTCCTGGTGCTGCTGATGTAGAAATAGACTTTGCATGGATGAAACTACTCCAGCATTGGAAGCACCCATAAGACATAGCTGTACCAAAGTATCAATTCACCTTGAATGAGTGTCTGTCTATACACTGATGAAAGTTCAT CCTCACTTCGTCAGTGACATCAGTTGTCACTTAAACTGTTGATTAATATTCTAAACAGGGAATATGTGTGTCTGTTCGACTTGAACCTTCGTCATGTCAAGTGGAGCTGGCATTATATTCAGCTGAACATGCTTGATGAAATGATGAGTCGATCTGT GTTGCACC ] [-] EMBL AU063640 [ GTA CCTTGAGGGTGACTATTCTTGGTGCTGCTGATGTAGAAATAGACTTTGCATGGATGAAACTACTCCAGCATTGGAAGCA CCATAAGACATAGCTGTACCAAAGTATCAATTCACCTTGAATGAGTGTCTGTCTATACACTGATGAAAGTTCATCCCTCACTTCGTCAGTGACATCAGTTGTCACTTAAACTGTTGATTAATATTCTAAACAGGGAATATGTGTGTCTGTTCGACTTGAACCTTCGTCATGTCAAGTGGAGCTGGCATTATATTCAGCTGAACATGCTTGATGAAATGATGAGTCGATCTGTGG TGCACC ] consensusID : consensus_10551#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence [CCTCCGCCGCGTGCGAAGCTTGGAGAGTTCGAGCACGGGCATGGCGTCCTCGGGGGGAGCGGCGATCTCGGCGGGGCCCACGCCGCCGTCGGCGGCGGCGGCGTCGTCGGTGGACTGGCACCTGCGGCCGCCGAACCCGAAGAACCCGGTGGTGTTCTTCGACGTGACCATCGGGTCCATCCCCGCCGGCCGCATCAAGATGGAGCTCTTCGCCGACATCGTCCCCAAGACGGCGGAGAACTTCCGGCAGTTCTGCACCGGAGAGCACAGGAAATCGGGTTTACCACAGGGATATAAGGGTTGTCAGTTCCATCGAGTGATCAAAGATTTCATGATTCAGGGAGGTGACTATATGAAGGGGGATGGTACTGGATGCACGTCAATCTATGGTACCTAATTTGATGATGAAAACTTCCTTGGCGAGCATACTGGTCCTGCCCTACTTTCTTTGGCCAATAGTGGGGTGACCTCTAGTGGATCCTCCGTTCTTTATAACTTGTTGCAAATTGTGAATGGCTGGACCACAACGCTTGTTGGTTTTGGGAGGGTCCTTGGGGGATGGTATGCTTGCTGTCCCGCAGAATTAAAATTGTTCANACTGGACCCAGCCAATCGACCACGCCCCGCT] [+] EMBL CA753602 [CCTCCGCCGCGTGCGAAGCTTGGAGAGTTCGAGCACGGGCATGGCGTCCTCGGGGGGAGCGGCGATCTCGGCGGGGCCCACGCCGCCGTCGGCGGCGGCGGCGTCGTCGGTGGACTGGCACCTGCGGCCGCCGAACCCGAAGAACCCGGTGGTGTTCTTCGACGTGACCATCGGGTCCATCCCCGCCGGCCGCATCAAGATGGAGCTCTTCGCCGACATCGTCCCCAAGACGGCGGAGAACTTCCGGCAGTTCTGCACCGGAGAGCACAGGAAATCGGGTTTACCACAGGGATATAAGGGTTGTCAGTTCCATCGAGTGATCAAAGATTTCATGATTCAGGGAGGTGACTATATGAAGGGGGATGGTACTGGATGCACGTCAATCTATGGTACCTAATTTGATGATGAAAACTTCCTTGGCGAGCATACTGGTCCTGCCCTACTTTCTTTGGCCAATAGTGGGGTGACCTCTAGTGGATCCTCCGTTCTTTATAACTTGTTGCAAATTGTGAATGGCTGGACCACAACGCTTGTTGGTTTTGGGAGGGTCCTTGGGGGATGGTATGCTTGCTGTCCCGCAGAATTAAAATTGTTCANACTGGACCCAGCCAATCGACCACGCCCCGCT] consensusID : consensus_10551#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 618 fasta sequence [GATGGTTACCATTCTGATGTGGGAGCGGCCATCGAGTGATCAAAGATTTCATGATTCAGGGAGGTGACTATATGAAGGGGGATGGTACTGGATGCACGTCAATCTATGGTACCAAATTTGATGATGAAAACTTCATTGCAAAGCATACTGGTCCTGGCCTACTTTCTATGGCAAATAGTGGGGTGAACTCTAATGGATCTCAGTTCTTTATAACTTGTGCAAAATGTGAATGGCTGGACAACAAGCATGTGGTTTTTGGGAGGGTGCTAGGGGATGGTATGCTTGCTGTGCGGAAGATCGAGAATGTTGCAACTGGACCAAACAACCGACCGAAGCTCGCATGTGTCATAAGCGAGTGTGGTGAGATGTAGTTTGTACCTTGAGGGTGACTATTCTTGGTGCTGCTGATGTAGAAATAGACTTTGCATGGATGAAACTACTCCAGCATTGGAAGCACCATAAGACATAGCTGTACCAAAGTATCAATTCACCTTGAATGAGTGTCTGTCTATACACTGATGAAAGTTCATCCTCACTTCGTCAGTGACATCAGTTGTCACTTAAACTGTTGATTAATATTCTAAACAGGGAATATGTGTGTCTGTTCGACTTGAAAAA] [+] EMBL BI306525 [GATGGTTACCATTCTGATGTGGGAGCGGCCATCGAGTGATCAAAGATTTCATGATTCAGGGAGGTGACTATATGAAGGGGGATGGTACTGGATGCACGTCAATCTATGGTACCAAATTTGATGATGAAAACTTCATTGCAAAGCATACTGGTCCTGGCCTACTTTCTATGGCAAATAGTGGGGTGAACTCTAATGGATCTCAGTTCTTTATAACTTGTGCAAAATGTGAATGGCTGGACAACAAGCATGTGGTTTTTGGGAGGGTGCTAGGGGATGGTATGCTTGCTGTGCGGAAGATCGAGAATGTTGCAACTGGACCAAACAACCGACCGAAGCTCGCATGTGTCATAAGCGAGTGTGGTGAGATGTAGTTTGTACCTTGAGGGTGACTATTCTTGGTGCTGCTGATGTAGAAATAGACTTTGCATGGATGAAACTACTCCAGCATTGGAAGCACCATAAGACATAGCTGTACCAAAGTATCAATTCACCTTGAATGAGTGTCTGTCTATACACTGATGAAAGTTCATCCTCACTTCGTCAGTGACATCAGTTGTCACTTAAACTGTTGATTAATATTCTAAACAGGGAATATGTGTGTCTGTTCGACTTGAAAAA] [+] EMBL CB964769 [ TCAAAGATTTCATGATTCAGGGAGGTGACTATATGAAGGGGGATGGTACTGGATGCACGTCAATCTATGGTACCAAATTTGATGATGAAAACTTCATTGCAAAGCATACTGGTCCTGGCCTACTTTCTATGGCAAATAGTGGGGTGAACTCTAATGGATCTCAGTTCTTTATAACTTGTGCAAAATGTGAATGGCTGGACAACAAGCATGTGGTTTTTGGGAGGGTGCTAGGGGATGGTATGCTTGCTGTGCGGAAGATCGAGAATGTTGCAACTGGACCAAACAACCGAACGAAGCTCGCATGTGTCATAAGCGAGTGTGGTGAGATGTAGTTTGTACCTTGAGGG ] consensusID : consensus_10551#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [CATGTGGGAGCGGCCATCGAGTGATCCAAGCATTTCATGATTCAAGAGGTGACTATATGAAGGGGGATGGTACTGGATGCACGTCAATCTATGGTACCAAATTTGATGATGACAACTTCATTGCAAAGCATACTGGTCCTGGCCTACTTTCTATGGCAAATAGTGGGGTGAACTCTAATGGATCTCAGTTCTTTATAACTTGTGCAAAATGTGAATGGCTGGACACACAAGCATGTGGTTTTTGGGCAGGGTGCTAGGGGATGGTATGCTTGCTGTGCGGACGATCGCAGCACTGTTGCAACTGGACACAAACAACCGACCGAAGCTCGCATGTGTCATAAGCGAGTGTGGTGAGATGTCAGAAGTCCT] [+] EMBL CB966198 [CATGTGGGAGCGGCCATCGAGTGATCCAAGCATTTCATGATTCAAGAGGTGACTATATGAAGGGGGATGGTACTGGATGCACGTCAATCTATGGTACCAAATTTGATGATGACAACTTCATTGCAAAGCATACTGGTCCTGGCCTACTTTCTATGGCAAATAGTGGGGTGAACTCTAATGGATCTCAGTTCTTTATAACTTGTGCAAAATGTGAATGGCTGGACACACAAGCATGTGGTTTTTGGGCAGGGTGCTAGGGGATGGTATGCTTGCTGTGCGGACGATCGCAGCACTGTTGCAACTGGACACAAACAACCGACCGAAGCTCGCATGTGTCATAAGCGAGTGTGGTGAGATGTCAGAAGTCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10551#2 ------------------------------------------------------------ consensus_10551#3 ------------------------------------------------------------ consensus_10551#0 CGCCGCCTCCGCCGCGTGCGAAGCTTGGAGAGTTCGAGCACGGGCATGGCGTCCTCGGGG 60 consensus_10551#1 --------CCTCCGCCGCGTGCGAAGCTTGGAGAGTTCGAGCACGGGCATGGCGTCCTCG 52 consensus_10551#2 ------------------------------------------------------------ consensus_10551#3 ------------------------------------------------------------ consensus_10551#0 GGAGCGGCGATCTCGGCGGGGCCCACGCCGCCGTCGGCGGCGGCGGCGTCGTCGTCGGTG 120 consensus_10551#1 GGGGGAGCGGCGATCTCGGCGGGGCCCACGCCGCCGTCGGCGGCGGCGGCGTCGTCGGTG 112 consensus_10551#2 ------------------------------------------------------------ consensus_10551#3 ------------------------------------------------------------ consensus_10551#0 GACTGGCACCTGCGGCCGCCGAACCCGAAGAACCCGGTGGTGTTCTTCGACGTGACCATC 180 consensus_10551#1 GACTGGCACCTGCGGCCGCCGAACCCGAAGAACCCGGTGGTGTTCTTCGACGTGACCATC 172 consensus_10551#2 ------------------------------------------------------------ consensus_10551#3 ------------------------------------------------------------ consensus_10551#0 GGGTCCATCCCCGCCGGCCGCATCAAGATGGAGCTCTTCGCCGACATCGTCCCCAAGACG 240 consensus_10551#1 GGGTCCATCCCCGCCGGCCGCATCAAGATGGAGCTCTTCGCCGACATCGTCCCCAAGACG 232 consensus_10551#2 -------------------------------------------GATGGTTACCATTCTGA 17 consensus_10551#3 ----------------------------------------------------------CA 2 consensus_10551#0 GCGGAGAACTTCCGGCAGTTCTGCACTGGAGAGCACAGGAAATCAGGTTTACCACAGGGA 300 consensus_10551#1 GCGGAGAACTTCCGGCAGTTCTGCACCGGAGAGCACAGGAAATCGGGTTTACCACAGGGA 292 * consensus_10551#2 TGTGGGAGCGG------CCATCGAGTGATCAAAG-ATTTCATGATTCAGGGAGGTGACTA 70 consensus_10551#3 TGTGGGAGCGG------CCATCGAGTGATCCAAGCATTTCATGATTCAAG-AGGTGACTA 55 consensus_10551#0 TATAAGGGTTGTCAGTTCCATCGAGTGATCAAAG-ATTTCATGATTCAGGGAGGTGACTA 359 consensus_10551#1 TATAAGGGTTGTCAGTTCCATCGAGTGATCAAAG-ATTTCATGATTCAGGGAGGTGACTA 351 * * * * * ************* *** ************* * ********* consensus_10551#2 TATGAAGGGGGATGGTACTGGATGCACGTCAATCTATGGTACCAAATTTGATGATGAAAA 130 consensus_10551#3 TATGAAGGGGGATGGTACTGGATGCACGTCAATCTATGGTACCAAATTTGATGATGACAA 115 consensus_10551#0 TATGAAGGGGGATGGTACTGGATGCACGTCAATCTATGGTACCAAATTTGATGATGAAAA 419 consensus_10551#1 TATGAAGGGGGATGGTACTGGATGCACGTCAATCTATGGTACCTAATTTGATGATGAAAA 411 ******************************************* ************* ** consensus_10551#2 CTTCATTGCAAAGCATACTGGTCCTGGCCTACTTTCTATGGCAAATAGTGGGGTGAACTC 190 consensus_10551#3 CTTCATTGCAAAGCATACTGGTCCTGGCCTACTTTCTATGGCAAATAGTGGGGTGAACTC 175 consensus_10551#0 CTTCATTGCAAAGCATACTGGTCCTGGCCTACTTTCTATGGCAAATAGTGGGGTGAACTC 479 consensus_10551#1 CTTCCTTGGCGAGCATACTGGTCCTGCCCTACTTTCTTTGGCCAATAGTGGGGTGACCTC 471 **** *** *************** ********** **** ************* *** consensus_10551#2 TAATGGATC-TCAGTTCTTTATAACTTGT-GCAAAATGTGAATGGCTGGACA-ACAAGCA 247 consensus_10551#3 TAATGGATC-TCAGTTCTTTATAACTTGT-GCAAAATGTGAATGGCTGGACACACAAGCA 233 consensus_10551#0 TAATGGATC-TCAGTTCTTTATAACTTGT-GCAAAATGTGAATGGCTGGACA-ACAAGCA 536 consensus_10551#1 TAGTGGATCCTCCGTTCTTTATAACTTGTTGCAAATTGTGAATGGCTGGACCACAACGCT 531 ** ****** ** **************** ***** *************** * ** consensus_10551#2 TGTGGTTTTTGGG-AGGGTGCTAGGGGATGGTATGCTTGCTGTGCGGAAGATCG--AGAA 304 consensus_10551#3 TGTGGTTTTTGGGCAGGGTGCTAGGGGATGGTATGCTTGCTGTGCGGACGATCGCAGCAC 293 consensus_10551#0 TGTGGTTTTTGGG-AGGGTGCTAGGGGATGGTATGCTTGCTGTGCGGAAGATCG--AGAA 593 consensus_10551#1 TGTTGGTTTTGGGAGGGTCCTTGGGGGATGGTATGCTTGCTGTCCCGCAGAATT-AAAAT 590 *** * ******* ** * ******************** * * ** * consensus_10551#2 TGTTGCAACTGGAC-CAAACAACCGACCGAAGCTCGCATGTGTCATAAGCGAGTGTGGTG 363 consensus_10551#3 TGTTGCAACTGGACACAAACAACCGACCGAAGCTCGCATGTGTCATAAGCGAGTGTGGTG 353 consensus_10551#0 TGTTGCAACTGGAC-CAAACAACCGACCGAAGCTCGCATGTGTCATAAGCGAGTGTGGTG 652 consensus_10551#1 TGTTCANACTGGACCCAGCCAATCGACCACGCCCCGCT---------------------- 628 **** ******* ** *** ***** * *** consensus_10551#2 AGATGTAGTTTGTACCTTGAGGGTGACTATTCTTGGTGCTGCTGATGTAGAAATAGACTT 423 consensus_10551#3 AGATGTCAGAAGTCCT-------------------------------------------- 369 consensus_10551#0 AGATGTAGTTTGTACCTTGAGGGTGACTATTCTTGGTGCTGCTGATGTAGAAATAGACTT 712 consensus_10551#1 ------------------------------------------------------------ consensus_10551#2 TGCATGGATGAAACTACTCCAGCATTGGAAGCACCATAAGACATAGCTGTACCAAAGTAT 483 consensus_10551#3 ------------------------------------------------------------ consensus_10551#0 TGCATGGATGAAACTACTCCAGCATTGGAAGCACCATAAGACATAGCTGTACCAAAGTAT 772 consensus_10551#1 ------------------------------------------------------------ consensus_10551#2 CAATTCACCTTGAATGAGTGTCTGTCTATACACTGATGAAAGTTCATCCTCACTTCGTCA 543 consensus_10551#3 ------------------------------------------------------------ consensus_10551#0 CAATTCACCTTGAATGAGTGTCTGTCTATACACTGATGAAAGTTCATCCTCACTTCGTCA 832 consensus_10551#1 ------------------------------------------------------------ consensus_10551#2 GTGACATCAGTTGTCACTTAAACTGTTGATTAATATTCTAAACAGGGAATATGTGTGTCT 603 consensus_10551#3 ------------------------------------------------------------ consensus_10551#0 GTGACATCAGTTGTCACTTAAACTGTTGATTAATATTCTAAACAGGGAATATGTGTGTCT 892 consensus_10551#1 ------------------------------------------------------------ consensus_10551#2 GTTCGACTTGAAAAA--------------------------------------------- 618 consensus_10551#3 ------------------------------------------------------------ consensus_10551#0 GTTCGACTTGAACCTTCGTCATGTCAAGTGGAGCTGGCATTATATTCAGCTGAACATGCT 952 consensus_10551#1 ------------------------------------------------------------ consensus_10551#2 -------------------------------------------------------- consensus_10551#3 -------------------------------------------------------- consensus_10551#0 TGATGAAATGATGAGTCGATCTGTGGTTGCACCCATTTTATAAAGTATACTAAACT 1008 consensus_10551#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||