cluster # 10559

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Oryza sativa
cluster # 10559 cluster # 10559 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10559#0 length = 657 sequences # 5

consensus_10559#1 length = 241 sequences # 2

consensusID : consensus_10559#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 657
fasta sequence

                              [AAAAAAAAAAAAAGAGAACAAAACCCTAGAATTGGGGGAAGGGTTCATCAGGTCTTCTTCTCTTCTGGAGGCGCGCTGCTCTTCGCGGCATCTCAATTCCCACCGCCGCATCGCGAGATCTCCGGCCTTTTCTCCTTCCGGTTGAGGAGCAAAGAGCAGCAATTATGGCGGCGAAACCCGAGCCGACCCAGTTGGAGAAGGAGCAGATGTTCGGGATGATGGAGAAGGAGATGGAGTACCGGGTCGATCTTTTCAACCGACTTACACAGACTTGTTTTGACAAGTGCATTGAGAAAAGGTATAAAGAAGCTGAGCTCAATATGGGTGAGAACAGTTGCATTGATCGATGTGTTTCGAAGTACTGGCAGGTAACTAATATGGTAGGTCAGATGCTCGGTAACCGGCCTCAGATGTGAGGCGAGAAGCAGTAGAAGCATTAGGCCAGACCATTGTCGCTATGTTTCTCCACATTGGTTTTAGAATGTTACCGATTGCCAGAAGTACACAGCACGAGTGAGTGTGACCGACTAATGGATTGCCCGAAAAGAAATTGCAATGTTCCTTTCCAATGGTGTACCTTCTCCCTGAATCATGAACAGGCCACATGCCTATAATAATTTGGTACAGCTAGACGACGATTTTTGCTGCGAAAAAAAA]

[+] EMBL AK059163             [AAAAAAAAAAAAAGAGAACAAAACCCTAGAATTGGGGGAAGGGTTCATCAGGTCTTCTTCTCTTCTGGAGGCGCGCTGCTCTTCGCGGCATCTCAATTCCCACCGCCGCATCGCGAGATCTCCGGCCTTTTCTCCTTCCGGTTGAGGAGCAAAGAGCAGCAATTATGGCGGCGAAACCCGAGCCGACCCAGTTGGAGAAGGAGCAGATGTTCGGGATGATGGAGAAGGAGATGGAGTACCGGGTCGATCTTTTCAACCGACTTACACAGACTTGTTTTGACAAGTGCATTGAGAAAAGGTATAAAGAAGCTGAGCTCAATATGGGTGAGAACAGTTGCATTGATCGATGTGTTTCGAAGTACTGGCAGGTAACTAATATGGTAGGTCAGATGCTCGGTAACCGGCCTCAGATGTGAGGCGAGAAGCAGTAGAAGCATTAGGCCAGACCATTGTCGCTATGTTTCTCCACATTGGTTTTAGAATGTTACCGATTGCCAGAAGTACACAGCACGAGTGAGTGTGACCGACTAATGGATTGCCCGAAAAGAAATTGCAATGTTCCTTTCCAATGGTGTACCTTCTCCCTGAATCATGAACAGGCCACATGCCTATAATAATT                                      ]
[+] EMBL CF328301             [                                                                   GAGGCGCGCTGCTCTTCGCGGCATCTCAATTCCCACCGCCGCATCGCGAGATCTCCGGCCTTTTCTCCTTCCGGTTGAGGAGCAAAGAGCAGCAATTATGGCGGCGAAACCCGAGCCGACCCAGTTGGAGAAGGAGCAGATGTTCGGGATGATGGAGAAGGAGATGGAGTACCGGGTCGATCTTTTCAACCGACTTACACAGACTTGTTTTGACAAGTGCATTGAGAAAAGGTATAAAGAAGCTGAGCTCAATATGGGTGAGAACAGTTGCGTTGATCGATGTGTTTCGAAGTACTGGCAGGTAACTAATATGGTAGGTCAGATGCTCGGTAACCGGCCTCAGATGTGAGGCGAGAAGCAGTAGAAGCATTAGGCCAGACCATTGTCGCTATGTTTCTCCACATTGGTTTTAGAATGTTACCGATTGCCAGAAGTACACAGCACGAGTGAGTGTGACCGACTAATGGATTGCCCGAAAAGAAATTGCAATGTTCCTTTCCAATGGTGTACCTTCTCCCTGAATCATGAACAGGCCACATGCCTATAATAATTTGGTACAGCTAGACGACGAT                  ]
[+] EMBL CF313807             [                                                                                                                                                                                                                        TGATGGAGAAGGAGATGGAGTACCGGGTCGATCTTTTCAACCGACTT                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CB678874             [                                                                                                                                                                                                                                                                                     TGACACCTGCATTGAGAAAAGGTATAAAGAAGCTGAGCTCAATATGGGTGAGAACAGTTGCATTGATCGATGTGTTTCGAAGTACTGGCAGGTAACTAATATGGTAGGTCAGATGCTCGGTAACCGGCCTCAGATGTGAGGCGAGAAGCAGTAGAAGCATTAGGCCAGACCATTGTCGCTATGTTTCTCCACATTGGTTTTAGAATGTTACCGATTGCCAGAAGTACACAGCACGAGTGAGTGTGACCGACTAATGGATTGCCCGAAAAGAAATTGCAATGTTCCTTTCCAATGGTGTACCTTCTCCCTGAATCATGAACAGGCCACATGCCTATAATAATTTGGTACAGCTAGACGACGAT                  ]
[-] EMBL CF328302             [                                                                                                                                                                                                                                                                                                                                                                                                                                               AAGCATTAGGCCAGACCATTGTCGCTATGTTTCTCCACATTGGTTTTAGAATGTTACCGATTGCCAGAAGTACACAGCACGAGTGAGTGTGACCGACTAATGGATTGCCCGAAAAGAAATTGCAATGTTCCTTTCCAATGGTGTACCTTCTCCCTGAATCATGAACAGGCCACATGCCTATAATAATTTGGTACAGCTAGACGACGATTTTTGCTGCGAAAAAAAA]




>consensus_10559#0
AAAAAAAAAAAAAGAGAACAAAACCCTAGAATTGGGGGAAGGGTTCATCAGGTCTTCTTC
TCTTCTGGAGGCGCGCTGCTCTTCGCGGCATCTCAATTCCCACCGCCGCATCGCGAGATC
TCCGGCCTTTTCTCCTTCCGGTTGAGGAGCAAAGAGCAGCAATTATGGCGGCGAAACCCG
AGCCGACCCAGTTGGAGAAGGAGCAGATGTTCGGGATGATGGAGAAGGAGATGGAGTACC
GGGTCGATCTTTTCAACCGACTTACACAGACTTGTTTTGACAAGTGCATTGAGAAAAGGT
ATAAAGAAGCTGAGCTCAATATGGGTGAGAACAGTTGCATTGATCGATGTGTTTCGAAGT
ACTGGCAGGTAACTAATATGGTAGGTCAGATGCTCGGTAACCGGCCTCAGATGTGAGGCG
AGAAGCAGTAGAAGCATTAGGCCAGACCATTGTCGCTATGTTTCTCCACATTGGTTTTAG
AATGTTACCGATTGCCAGAAGTACACAGCACGAGTGAGTGTGACCGACTAATGGATTGCC
CGAAAAGAAATTGCAATGTTCCTTTCCAATGGTGTACCTTCTCCCTGAATCATGAACAGG
CCACATGCCTATAATAATTTGGTACAGCTAGACGACGATTTTTGCTGCGAAAAAAAA

consensusID : consensus_10559#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 241
fasta sequence

                              [CCTGGACTGAAGGAGTAGAAGCATTATGCCAGACCATTGTCGCTATGTTTCTCC-CATTGGTTTTAGAGTGTTACCGATTGCCAGAAGTACACAGCACGAGTGAGTGTGACCGACTAATGGATTGCCCGAAAAGAAATTGCAATGTTCCTTTCCAATGGTGTACCTTCTCCCTGAATCATGAACAGGCCACATGCCTATAATAATTTGGTACAGCTAAAAAAAAAAAAAAAAAAAACACTGT]

[+] EMBL CF301546             [CCTGGACTGAAGGAGTAGAAGCATTATGCCAGACCATTGTCGCTATGTTTCTCC CATTGGTTTTAGAGTGTTACCGATTGCCAGAAGTACACAGCACGAGTGAGTGTGACCGACTAATGGATTGCCCGAAAAGAAATTGCAATGTTCCTTTCCAATGGTGTACCTTCTCCCTGAATCATGAACAGGCCACATGCCTATAATAATTTGGTACAGCTAAAAAAA                   ]
[-] EMBL CF301545             [ CTGGACTGAAGGAGTAGAAGCATTAGGCCAGACCATTGTCGCTATGTTTCTCCACATTGGTTTTAGAGTGTTACCGATTGCCAGAAGTACACAGCACGAGTGAGTGTGACCGACTAATGGATTGCCCGAAAAGAAATTGCAATGTTCCTTTCCAATGGTGTACCTTCTCCCTGAATCATGAACAGGCCACATGCCTATAATAATTTGGTACAGCTAAAAAAAAAAAAAAAAAAAACACTGT]




>consensus_10559#1
CCTGGACTGAAGGAGTAGAAGCATTATGCCAGACCATTGTCGCTATGTTTCTCCCATTGG
TTTTAGAGTGTTACCGATTGCCAGAAGTACACAGCACGAGTGAGTGTGACCGACTAATGG
ATTGCCCGAAAAGAAATTGCAATGTTCCTTTCCAATGGTGTACCTTCTCCCTGAATCATG
AACAGGCCACATGCCTATAATAATTTGGTACAGCTAAAAAAAAAAAAAAAAAAAACACTG
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10559#0      AAAAAAAAAAAAAGAGAACAAAACCCTAGAATTGGGGGAAGGGTTCATCAGGTCTTCTTC 60
consensus_10559#1      ------------------------------------------------------------
                                                                                   

consensus_10559#0      TCTTCTGGAGGCGCGCTGCTCTTCGCGGCATCTCAATTCCCACCGCCGCATCGCGAGATC 120
consensus_10559#1      ------------------------------------------------------------
                                                                                   

consensus_10559#0      TCCGGCCTTTTCTCCTTCCGGTTGAGGAGCAAAGAGCAGCAATTATGGCGGCGAAACCCG 180
consensus_10559#1      ------------------------------------------------------------
                                                                                   

consensus_10559#0      AGCCGACCCAGTTGGAGAAGGAGCAGATGTTCGGGATGATGGAGAAGGAGATGGAGTACC 240
consensus_10559#1      ------------------------------------------------------------
                                                                                   

consensus_10559#0      GGGTCGATCTTTTCAACCGACTTACACAGACTTGTTTTGACAAGTGCATTGAGAAAAGGT 300
consensus_10559#1      ------------------------------------------------------------
                                                                                   

consensus_10559#0      ATAAAGAAGCTGAGCTCAATATGGGTGAGAACAGTTGCATTGATCGATGTGTTTCGAAGT 360
consensus_10559#1      ------------------------------------------------------------
                                                                                   

consensus_10559#0      ACTGGCAGGTAACTAATATGGTAGGTCAGATGCTCGGTAACCGGCCTCAGATGTGAGGCG 420
consensus_10559#1      -----------------------------------------------------CCTGGAC 7
                                                                               **  

consensus_10559#0      AGAAGCAGTAGAAGCATTAGGCCAGACCATTGTCGCTATGTTTCTCCACATTGGTTTTAG 480
consensus_10559#1      TGAAGGAGTAGAAGCATTATGCCAGACCATTGTCGCTATGTTTCTCC-CATTGGTTTTAG 66
                        **** ************* *************************** ************

consensus_10559#0      AATGTTACCGATTGCCAGAAGTACACAGCACGAGTGAGTGTGACCGACTAATGGATTGCC 540
consensus_10559#1      AGTGTTACCGATTGCCAGAAGTACACAGCACGAGTGAGTGTGACCGACTAATGGATTGCC 126
                       * **********************************************************

consensus_10559#0      CGAAAAGAAATTGCAATGTTCCTTTCCAATGGTGTACCTTCTCCCTGAATCATGAACAGG 600
consensus_10559#1      CGAAAAGAAATTGCAATGTTCCTTTCCAATGGTGTACCTTCTCCCTGAATCATGAACAGG 186
                       ************************************************************

consensus_10559#0      CCACATGCCTATAATAATTTGGTACAGCTAGACGACGATTTTTGCTGCGAAAAAAAA--- 657
consensus_10559#1      CCACATGCCTATAATAATTTGGTACAGCTAAAAAAAAA--------AAAAAAAAAAACAC 238
                       ****************************** *  *  *           ********   

consensus_10559#0      ---
consensus_10559#1      TGT 241