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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10565#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1568 fasta sequence
[TTCCTTTTTTTTTTTTTGAACACAAGAAACAGCTCAAATCATTGCAATTGCAATTTTACATGTTGTAGTATCTGTGCAGATCTCACCACATTTCGATGTACGCCACCACATGATACAGTGCACGATACAAGCAAATCCAGCATGATCACCCGTGTTAAATTCAGCTACTTCTACCGCCGGTGCAGTGAATACCTGACATACTCTGTCCGCAGCATGTTGAGCACATCATCATCAAGCTGCTCCAGCTGACCGGAGTCCCGCAGCTTGGGGTACAGATGGGCGACGCTGCCGACGGCGGCCTCCACCATCTCCCACTGACCCAGCTGCGCCGCGAAGACGACGAACTCGACGGAGGCGGCCGTGCTGGTGGAACTCAGGCAGGAGGTGACCACTGACAGGCTCTCCTCCTTCACTCCCTCCAGGAACCAGAATTCAGACAGGGATGACAGCTCGGCGTAAGGCCGCAGCTGAGAAAGCTGCTCCTCGCTGTTCAGGTTTCGCCATCGGCAATCGGGGTCGATCTTGGGTAGCTCGCCTGAGTAGAACCAGTGGATCAGTTTGTTCAGCGCTTGCCACCCCAGTGGAACATTGATAACTTCTGAGAAGCTCTCATGCATCCCAGATTGAAATAATGCTCGAAGGTAATCACAGCTCATGCTCAGTACAATTTTATGGCAGTGAACATGCGAAGTCGAGAGTTGGCATGAGCCATGGTAACACTTCATTTCTTCGTTTGACTGAGCCTCCAGAATTATGTCCGAGAATGAACATTTAACTGGTTCAAGTGCTGCAGTAAGATCATATCTAGGACAATCAGAGTTCCACCTAGGCTGCTCTTTTTG-AAGCATCTCTTGTAATGATTTCAAGTGACAATACTTCGCAAGTGTCCTTACTGGCTTAATGTTGTCATCATCTACCATGACAGAATTTGTGTATGTGTATTCCAAAATTTTCTTCAAGCCACAACTATCAACACGATCAGACATTCGAACATGATAAAATGATCTGCCCCATTCATCAGTAATTTTTCCATCACTACCAAGGGATTTTGCAGATGGCAACAACTTTGGACACCTTACTGAAATGATGGCTGTATGAGCTTTTAAAGATTCACCATTTGAAAGCAACAGTTCCAGATCAGCTAGCTCATTATCATCTAAGGCCCTTCTCATCTTTCCTCCCAACTTGCTTGGAAAACCGCATAGGCCAAACAAACTCAGTATACGTGAAATGTACAACTTCGGTCCTGGGCTCAAGTTTTGACATGACGCATTTTGAAGAACTCTAATCAGACCTTCACTATAATGATCTCTGCAATCATTGCACACAATCCCCACATCCAAATTCCTTTTACAGTGGATACAAACAAAATTGATGCTCTTCAGCAGATTAAACAACACCATGAGACCATAGATTAAAGCAATATTCTCACCTTCCCACTCTTTAACAAGACTACAACATGAACCTCCCTCAAAACAAAATTGCAGATGAGAAACAACTTTTGGCCTCGTGATATGTATATTATTGTGTACACATTCCTTGATAATGGTGGATAGTACAGCTACAGC]
[+] EMBL CB650487 [TTCCTTTTTTTTTTTTTGAACACAAGAAACAGCTCAAATCATTGCAATTGCAATTTTACATGTTGTAGTATCTGTGCAGATCTCACCACATTTCGATGTACGCCACCACATGATACAGTGCGCGATACAAGCAAATCCAGCATGATCACCCGGGTTAAATTCAGCTACTTCTACCGCCGGTGCAGTGAATACCTGACATACTCTGTCCGCAGCATGTTGAGCACATCATCATCAAGCTGCTCCAGCTGACCGGAGTCCCGCAGCTTGGGGTACAGATGGGCGACGCTGCCGACGGCGGCCTCCACCATCTCCCACTGACCCAGCTGCGCCGCGAAGACGACGAACTCGACGGAGGCGGCCGTGCTGGTGGAACTCAGGCAGGAGGTGACCACTGACAGGCTCTCCTCCTTCACTCCCTCCAGGAACCAGAATTCAGACAGGGATGACAGCTCGGCGTAAGGCCGCAGCTGAGAAAGCTGCTCCTCGCTGTTCAGGTTTCGCCATCGGCAATCGGGGTCGATCTTGGGTAGCTCGCCTGAGTAGAACCAGTGGATCAGTTTGTTCAGCGCTTGCCACCCCAGTGGAACATTGATAACTTCTGAGAAGCTCTCATGCATCCCAGATTGAAATAATGCTCGAAGGTAATCACAGCTCATGCTCAGTACAATTTTATGGCAGTGAACATGCGAAGTCGAGAGTTGGCATGAGCCATGGTAACACTTCATTTCTTCGTTTGACTGAGCCTCCAGAAT ]
[+] EMBL CB657893 [ tcTTTTTTTTTGAACACAAGAAACAGCTCAAATCATTGCAATTGCAATTTTACATGTTGTAGTATCTGTGCAGATCTCACCACATTTCGATGTACGCCACCACATGATACAGTGCACGATACAAGCAAATCCAGCATGATCACCCGTGTTAAATTCAGCTACTTCTACCGCCGGTGCAGTGAATACCTGACATACTCTGTCCGCAGCATGTTGAGCACATCATCATCAAGCTGCTCCAGCTGACCGGAGTCCCGCAGCTTGGGGTACAGATGGGCGACGCTGCCGACGGCGGCCTCCACCATCTCCCACTGACCCAGCTGCGCCGCGAAGACGACGAACTCGACGGAGGCGGCCGTGCTGGTGGAACTCAGGCAGGAGGTGACCACTGACAGGCTCTCCTCCTTCACTCCCTCCAGGAACCAGAATTCAGACAGGGATGACAGCTCGGCGTAAGGCCGCAGCTGAGAAAGCTGCTCCTCGCTGTTCAGGTTTCGCCATCGGCAATCGGGGTCGATCTTGGGTAGCTCGCCTGAGTAGAACCAGTGGATCAGTTTGTTCAGCGCTTGCCACCCCAGTGGAACATTGATAACTTCTGAGAAGCTCTCATGCATCCCAGATTGAAATAATGCTCGAAGGTAATCACAGCTCATGCTCAGTACAATTTTATGGCAGTGAACATGCGAAGTCGAGAGTTGGCATGAGCCATGGTAACACTTCATTTCTTCGTTTGACTGAGCCTCCAGAATTATGTCCGAGAATGAACATTTAACTGGTTCAAGTGCTGCAGTAAGATCATATCTAGGACAATCAGAGTTCCACCTAGGC ]
[+] EMBL CB657929 [ AACACAAGAAACAGCTCAAATCATTGCAATTGCCATTTTACATGTTGTAGTATCTGTGCAGATCTCACCACATTTCGATGTACGCCACCACATGATACAGTGCACGATACAAGCAAATCCAGCATGATCACCCGTGTTAAATTCAGCTACTTCTACCGCCGGTGCAGTGAATACCTGACATACTCTGTCCGCAGCATGTTGAGCACATCATCATCAAGCTGCTCCAGCTGACCGGAGTCCCGCAGCTTGGGGTACAGATGGGCGACGCTGCCGACGGCGGCCTCCACCATCTCCCACTGACCCAGCTGCGCCGCGAAGACGACGAACTCGACGGAGGCGGCCGTGCTGGTGGAACTCAGGCAGGAGGTGACCACTGACAGGCTCTCCTCCTTCACTCCCTCCAGGAACCAGAATTCAGACAGGGATGACAGCTCGGCGTAAGGCCGCAGCTGAGAAAGCTGCTCCTCGCTGTTCAGGTTTCGCCATCGGCAATCGGGGTCGATCTTGGGTAGCTCGCCTGAGTAGAACCAGTGGATCAGTTTGTTCAGCGCTTGCCACCCCAGTGGAACATTGATAACTTCTGAGAAGCTCTCATGCATCCCAGATTGAAATAATGCTCGAAGGTAATCACAGCTCATGCTCAGTACAATTTTATGGCAGTGAACATGCGAAGTCGAGAGTTGGCATGAGCCATGGTAACACTTCATTTCTTCGTTTGACTGAGCCTCCAGAATTATGTCCGAGAATGAACATTTAACTGGTTCAAGTGCTGCAGTAAGATCATATCTAGGACAATCAGAGTTCCACCTAGGCTGCTCTTTTTG AA ]
[+] EMBL CB651489 [ AAACAGCTCAAATCATTGCAATTGCAATTTTACATGTTGTAGTATCTGTGCAGATCTCACCACATTTCGATGTACGCCACCACATGATACAGTGCACGATACAAGCAAATCCAGCATGATCACCCGTGTTAAATTCAGCTACTTCTACCGCCGGTGCAGTGAATACCTGACATACTCTGTCCGCAGCATGTTGAGCACATCATCATCAAGCTGCTCCAGCTGACCGGAGTCCCGCAGCTTGGGGTACAGATGGGCGACGCTGCCGACGGCGGCCTCCACCATCTCCCACTGACCCAGCTGCGCCGCGAAGACGACGAACTCGACGGAGGCGGCCGTGCTGGTGGAACTCAGGCAGGAGGTGACCACTGACAGGCTCTCCTCCTTCACTCCCTCCAGGAACCAGAATTCAGACAGGGATGACAGCTCGGCGTAAGGCCGCAGCTGAGAAAGCTGCTCCTCGCTGTTCAGGTTTCGCCATCGGCAATCGGGGTCGATCTTGGGTAGCTCGCCTGAGTAGAACCAGTGGATCAGTTTGTTCAGCGCTTGCCACCCCAGTGGAACATTGATAACTTCTGAGAAGCTCTCATGCATCCCAGATTGAAATAATGCTCGAAGGTAATCACAGCTCATGCTCAGTACAATTTTATGGCAGTGAACATGCGAAGTCAAGAGTTGG ]
[-] EMBL CB657928 [ TTATGTCCGAGAATGAACATTTAACTGGTTCAAGTGCTGCAGTAAGATCATATCTAGGACAATCAGAGTTCCACNTAGGCTGCTCTTTTTG AAGCATCTCTTGTAATGATTTCAAGTGACAATACTTCGCAAGTGTCCTTACTGGCTTAATGTTGTCATCATCTACCATGACAGAATTTGTGTATGTGTATTCCAAAATTTTCTTCAAGCCACAACTATCAACACGATCAGACATTCGAACATGATAAAATGATCTGCCCCATTCATCAGTAATTTTTCCATCACTACCAAGGGATTTTGCAGATGGCAACAACTTTGGACACCTTACTGAAATGATGGCTGTATGAGCTTTTAAAGATTCACCATTTGAAAGCAACAGTTCCAGATCAGCTAGCTCATTATCATCTAAGGCCCTTCTCATCTTTCCTCCCAACTTGCTTGGAAAACCGCATAGGCCAAACAAACTCAGTATACGTGAAATGTACAACTTCGGTCCTGGGCTCAAGTTTTGACATGACGCATTTTGAAGAACTCTAATCAGACCTTCACTATAATGATCTCTGCAATCATTGCACACAATCCCCACATCCAAATTCCTTTTACAGTGGATACAAACAAAATTGATGCTCTTCAGCAGATTAAACAACACCATGAGACCATAGATTAAAGCAATATTCTCACCTTCCCACTCTTTAACAAGACTACAACATGAACCTCCCTCAAAACAAAATTGCAGATGAGAAACAACTTTTGGCCTCGTGATATGTATATTATTGTGTACACATTCCTTGATAATGGTGGATAGTACAGCTACAGC]
[-] EMBL CB657892 [ TTTGNAAGCATCTCTTGTAATGATTTCAAGTGACAATACTTCGCAAGTGTCCTTACTGGCTTAATGTTGTCATCATCTACCATGACAGAATTTGTGTATGTGTATTCCAAAATTTTCTTCAAGCCACAACTATCAACACGATCAGACATTCGAACATGATAAAATGATCTGCCCCATTCATCAGTAATTTTTCCATCACTACCAAGGGATTTTGCAGATGGCAACAACTTTGGACACCTTACTGAAATGATGGCTGTATGAGCTTTTAAAGATTCACCATTTGAAAGCAACAGTTCCAGATCAGCTAGCTCATTATCATCTAAGGCCCTTCTCATCTTTCCTCCCAACTTGCTTGGAAAACCGCATAGGCCAAACAAACTCAGTATACGTGAAATGTACAACTTCGGTCCTGGGCTCAAGTTTTGACATGACGCATTTTGAAGAACTCTAATCAGACCTTCACTATAATGATCTCTGCAATCATTGCACACAATCCCCACATCCAAATTCCTTTTACAGTGGATACAAACAAAATTGATGCTCTTCAGCAGATTAAACAACACCATGAGACCATAGATTAAAGCAATATTCTCACCTTCCCACTCTTTAACAAGACTACAACATGAACCTCCCTCAAAACAAAATTGCAGATGAGAAACAACTTTTGGCCTCGTGATATGTATATTATTGTGTACACATTCCTTGATAATGGTGGATAGTACAGCTACAGC]
consensusID : consensus_10565#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 708 fasta sequence
[AAATGTGAAACATTTATGAACACAAGATGAACAAAATCGTTTCAAAAATACAATATGAACACAAGAAACAGCTCAAATCATTGCAATTGCAATTTTACATGTTGTAGTATCTGTGCAGATCTCACCACATTTCGATGTACGCCACCACATGATACAGTGCACGATACAAGCAAATCCAGCATGATCACCCGTGTTAAATTCAGCTACTTCTACCGCCGGTGCAGTGAATACCTGACATACTCTGTCCGCAGCATGTTGAGCACATCATCATCAAGCTGCTCCAGCTGACCGGAGTCCCGCAGCTTGGGGTACAGATGGGCGACGCTGCCGACGGCGGCCTCCACCATCTCCCACTGACCCAGCTGCGCCGCGAAGACGACGAACTCGACGGAGGCGGCCGTGCTGGTGGAACTCAGGCAGGAGGTGACCACTGACAGGCTCTCCTCCTTCACTCCCTCCAGGAACCAGAATTCAGACAGGGATGACAGCTCGGCGTAAGGCCGCAGCTGAGAAAGCTGCTCCTCGCTGTTCAGGTTTCGCCATCGGCAATCGGGGTCGATCTTGGGTAGCTCGCCTGAGTAGAACCAGTGGATCAGTTTGTTCAGCGCTTGCCACCCCAGTGGAACATTGATAACTTCTGAGAAGCTCTCATGCATCCCAGATTGAAATAATGCTCGAAGGTAATCACAGCTCATGCTCAGTACAATT]
[+] EMBL CB630069 [AAATGTGAAACATTTATGAACACAAGATGAACAAAATCGTTTCAAAAATACAATATGAACACAAGAAACAGCTCAAATCATTGCAATTGCAATTTTACATGTTGTAGTATCTGTGCAGATCTCACCACATTTCGATGTACGCCACCACATGATACAGTGCACGATACAAGCAAATCCAGCATGATCACCCGTGTTAAATTCAGCTACTTCTACCGCCGGTGCAGTGAATACCTGACATACTCTGTCCGCAGCATGTTGAGCACATCATCATCAAGCTGCTCCAGCTGACCGGAGTCCCGCAGCTTGGGGTACAGATGGGCGACGCTGCCGACGGCGGCCTCCACCATCTCCCACTGACCCAGCTGCGCCGCGAAGACGACGAACTCGACGGAGGCGGCCGTGCTGGTGGAACTCAGGCAGGAGGTGACCACTGACAGGCTCTCCTCCTTCACTCCCTCCAGGAACCAGAATTCAGACAGGGATGACAGCTCGGCGTAAGGCCGCAGCTGAGAAAGCTGCTCCTCGCTGTTCAGGTTTCGCCATCGGCAATCGGGGTCGATCTTGGGTAGCTCGCCTGAGTAGAACCAGTGGATCAGTTTGTTCAGCGCTTGCCACCCCAGTGGAACATTGATAACTTCTGAGAAGCTCTCATGCATCCCAGATTGAAATAATGCTCGAAGGTAATCACAGCTCATGCTCAGTACAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10565#0 ---------------------------------------TTCCTTTTTTTTTTTTTGAAC 21
consensus_10565#1 AAATGTGAAACATTTATGAACACAAGATGAACAAAATCGTTTCAAAAATACAATATGAAC 60
** * * * *****
consensus_10565#0 ACAAGAAACAGCTCAAATCATTGCAATTGCAATTTTACATGTTGTAGTATCTGTGCAGAT 81
consensus_10565#1 ACAAGAAACAGCTCAAATCATTGCAATTGCAATTTTACATGTTGTAGTATCTGTGCAGAT 120
************************************************************
consensus_10565#0 CTCACCACATTTCGATGTACGCCACCACATGATACAGTGCACGATACAAGCAAATCCAGC 141
consensus_10565#1 CTCACCACATTTCGATGTACGCCACCACATGATACAGTGCACGATACAAGCAAATCCAGC 180
************************************************************
consensus_10565#0 ATGATCACCCGTGTTAAATTCAGCTACTTCTACCGCCGGTGCAGTGAATACCTGACATAC 201
consensus_10565#1 ATGATCACCCGTGTTAAATTCAGCTACTTCTACCGCCGGTGCAGTGAATACCTGACATAC 240
************************************************************
consensus_10565#0 TCTGTCCGCAGCATGTTGAGCACATCATCATCAAGCTGCTCCAGCTGACCGGAGTCCCGC 261
consensus_10565#1 TCTGTCCGCAGCATGTTGAGCACATCATCATCAAGCTGCTCCAGCTGACCGGAGTCCCGC 300
************************************************************
consensus_10565#0 AGCTTGGGGTACAGATGGGCGACGCTGCCGACGGCGGCCTCCACCATCTCCCACTGACCC 321
consensus_10565#1 AGCTTGGGGTACAGATGGGCGACGCTGCCGACGGCGGCCTCCACCATCTCCCACTGACCC 360
************************************************************
consensus_10565#0 AGCTGCGCCGCGAAGACGACGAACTCGACGGAGGCGGCCGTGCTGGTGGAACTCAGGCAG 381
consensus_10565#1 AGCTGCGCCGCGAAGACGACGAACTCGACGGAGGCGGCCGTGCTGGTGGAACTCAGGCAG 420
************************************************************
consensus_10565#0 GAGGTGACCACTGACAGGCTCTCCTCCTTCACTCCCTCCAGGAACCAGAATTCAGACAGG 441
consensus_10565#1 GAGGTGACCACTGACAGGCTCTCCTCCTTCACTCCCTCCAGGAACCAGAATTCAGACAGG 480
************************************************************
consensus_10565#0 GATGACAGCTCGGCGTAAGGCCGCAGCTGAGAAAGCTGCTCCTCGCTGTTCAGGTTTCGC 501
consensus_10565#1 GATGACAGCTCGGCGTAAGGCCGCAGCTGAGAAAGCTGCTCCTCGCTGTTCAGGTTTCGC 540
************************************************************
consensus_10565#0 CATCGGCAATCGGGGTCGATCTTGGGTAGCTCGCCTGAGTAGAACCAGTGGATCAGTTTG 561
consensus_10565#1 CATCGGCAATCGGGGTCGATCTTGGGTAGCTCGCCTGAGTAGAACCAGTGGATCAGTTTG 600
************************************************************
consensus_10565#0 TTCAGCGCTTGCCACCCCAGTGGAACATTGATAACTTCTGAGAAGCTCTCATGCATCCCA 621
consensus_10565#1 TTCAGCGCTTGCCACCCCAGTGGAACATTGATAACTTCTGAGAAGCTCTCATGCATCCCA 660
************************************************************
consensus_10565#0 GATTGAAATAATGCTCGAAGGTAATCACAGCTCATGCTCAGTACAATTTTATGGCAGTGA 681
consensus_10565#1 GATTGAAATAATGCTCGAAGGTAATCACAGCTCATGCTCAGTACAATT------------ 708
************************************************
consensus_10565#0 ACATGCGAAGTCGAGAGTTGGCATGAGCCATGGTAACACTTCATTTCTTCGTTTGACTGA 741
consensus_10565#1 ------------------------------------------------------------
consensus_10565#0 GCCTCCAGAATTATGTCCGAGAATGAACATTTAACTGGTTCAAGTGCTGCAGTAAGATCA 801
consensus_10565#1 ------------------------------------------------------------
consensus_10565#0 TATCTAGGACAATCAGAGTTCCACCTAGGCTGCTCTTTTTGAAGCATCTCTTGTAATGAT 861
consensus_10565#1 ------------------------------------------------------------
consensus_10565#0 TTCAAGTGACAATACTTCGCAAGTGTCCTTACTGGCTTAATGTTGTCATCATCTACCATG 921
consensus_10565#1 ------------------------------------------------------------
consensus_10565#0 ACAGAATTTGTGTATGTGTATTCCAAAATTTTCTTCAAGCCACAACTATCAACACGATCA 981
consensus_10565#1 ------------------------------------------------------------
consensus_10565#0 GACATTCGAACATGATAAAATGATCTGCCCCATTCATCAGTAATTTTTCCATCACTACCA 1041
consensus_10565#1 ------------------------------------------------------------
consensus_10565#0 AGGGATTTTGCAGATGGCAACAACTTTGGACACCTTACTGAAATGATGGCTGTATGAGCT 1101
consensus_10565#1 ------------------------------------------------------------
consensus_10565#0 TTTAAAGATTCACCATTTGAAAGCAACAGTTCCAGATCAGCTAGCTCATTATCATCTAAG 1161
consensus_10565#1 ------------------------------------------------------------
consensus_10565#0 GCCCTTCTCATCTTTCCTCCCAACTTGCTTGGAAAACCGCATAGGCCAAACAAACTCAGT 1221
consensus_10565#1 ------------------------------------------------------------
consensus_10565#0 ATACGTGAAATGTACAACTTCGGTCCTGGGCTCAAGTTTTGACATGACGCATTTTGAAGA 1281
consensus_10565#1 ------------------------------------------------------------
consensus_10565#0 ACTCTAATCAGACCTTCACTATAATGATCTCTGCAATCATTGCACACAATCCCCACATCC 1341
consensus_10565#1 ------------------------------------------------------------
consensus_10565#0 AAATTCCTTTTACAGTGGATACAAACAAAATTGATGCTCTTCAGCAGATTAAACAACACC 1401
consensus_10565#1 ------------------------------------------------------------
consensus_10565#0 ATGAGACCATAGATTAAAGCAATATTCTCACCTTCCCACTCTTTAACAAGACTACAACAT 1461
consensus_10565#1 ------------------------------------------------------------
consensus_10565#0 GAACCTCCCTCAAAACAAAATTGCAGATGAGAAACAACTTTTGGCCTCGTGATATGTATA 1521
consensus_10565#1 ------------------------------------------------------------
consensus_10565#0 TTATTGTGTACACATTCCTTGATAATGGTGGATAGTACAGCTACAGC 1568
consensus_10565#1 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||