cluster # 1057

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Oryza sativa
cluster # 1057 cluster # 1057 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1057#0 length = 259 sequences # 1

consensus_1057#1 length = 252 sequences # 1

consensusID : consensus_1057#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 259
fasta sequence

                              [AAGTCGCGTCGCACCGAAGCAGAGTAGAGAAGGAGAGGAGCGGAGGGCAGTCAGCCGTCCGATCGAGTGATCCGATGGCTCTCGCTCTCTCCACCTCTGCTGCTGCTGCCGCTGACGCCGCGGCGCGTGCGCTCGCGGCGAGGGTGACGACGACGAGGGGTTACGNCGCGTCGAGNTACTGTTCGNCGATGAGGCGTTCGGCGTNGNNGGTGGAAGNGAAGTTCGNTGCGTGGATGACGTAGTNGAAGGACGGGNTCNT]

[+] EMBL OSC16651             [AAGTCGCGTCGCACCGAAGCAGAGTAGAGAAGGAGAGGAGCGGAGGGCAGTCAGCCGTCCGATCGAGTGATCCGATGGCTCTCGCTCTCTCCACCTCTGCTGCTGCTGCCGCTGACGCCGCGGCGCGTGCGCTCGCGGCGAGGGTGACGACGACGAGGGGTTACGNCGCGTCGAGNTACTGTTCGNCGATGAGGCGTTCGGCGTNGNNGGTGGAAGNGAAGTTCGNTGCGTGGATGACGTAGTNGAAGGACGGGNTCNT]




>consensus_1057#0
AAGTCGCGTCGCACCGAAGCAGAGTAGAGAAGGAGAGGAGCGGAGGGCAGTCAGCCGTCC
GATCGAGTGATCCGATGGCTCTCGCTCTCTCCACCTCTGCTGCTGCTGCCGCTGACGCCG
CGGCGCGTGCGCTCGCGGCGAGGGTGACGACGACGAGGGGTTACGNCGCGTCGAGNTACT
GTTCGNCGATGAGGCGTTCGGCGTNGNNGGTGGAAGNGAAGTTCGNTGCGTGGATGACGT
AGTNGAAGGACGGGNTCNT

consensusID : consensus_1057#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 252
fasta sequence

                              [GTCGCGTCGCACCGAAGCAGAGTAGAGAAGGAGAGGAGCGGAGGNCAGTCAGCCGTCCGATCGAGTGATCCGATGGCTCTCGCTCTCTCCACCTCTGCTGCTGCTGCCGCTGACGACGCGCGCGTGCGCTCGCGGCGAGGGTGACGACGACGAGGGGTTACGACGCGTCGGGNTNCGGTCGGCGATGAGGCGTGCGGCGGCGACGGTGGAAGGGAAGTGCGCTGCGTGGATGACGAAGNCGAAGGACGTGTC]

[+] EMBL OSC16581             [GTCGCGTCGCACCGAAGCAGAGTAGAGAAGGAGAGGAGCGGAGGNCAGTCAGCCGTCCGATCGAGTGATCCGATGGCTCTCGCTCTCTCCACCTCTGCTGCTGCTGCCGCTGACGACGCGCGCGTGCGCTCGCGGCGAGGGTGACGACGACGAGGGGTTACGACGCGTCGGGNTNCGGTCGGCGATGAGGCGTGCGGCGGCGACGGTGGAAGGGAAGTGCGCTGCGTGGATGACGAAGNCGAAGGACGTGTC]




>consensus_1057#1
GTCGCGTCGCACCGAAGCAGAGTAGAGAAGGAGAGGAGCGGAGGNCAGTCAGCCGTCCGA
TCGAGTGATCCGATGGCTCTCGCTCTCTCCACCTCTGCTGCTGCTGCCGCTGACGACGCG
CGCGTGCGCTCGCGGCGAGGGTGACGACGACGAGGGGTTACGACGCGTCGGGNTNCGGTC
GGCGATGAGGCGTGCGGCGGCGACGGTGGAAGGGAAGTGCGCTGCGTGGATGACGAAGNC
GAAGGACGTGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1057#0      AAGTCGCGTCGCACCGAAGCAGAGTAGAGAAGGAGAGGAGCGGAGGGCAGTCAGCCGTCC 60
consensus_1057#1      --GTCGCGTCGCACCGAAGCAGAGTAGAGAAGGAGAGGAGCGGAGGNCAGTCAGCCGTCC 58
                        ******************************************** *************

consensus_1057#0      GATCGAGTGATCCGATGGCTCTCGCTCTCTCCACCTCTGCTGCTGCTGCCGCTGACGCCG 120
consensus_1057#1      GATCGAGTGATCCGATGGCTCTCGCTCTCTCCACCTCTGCTGCTGCTGCCGCTGACGACG 118
                      ********************************************************* **

consensus_1057#0      CGGCGCGTGCGCTCGCGGCGAGGGTGACGACGACGAGGGGTTACGNCGCGTCGAGNTACT 180
consensus_1057#1      CG-CGCGTGCGCTCGCGGCGAGGGTGACGACGACGAGGGGTTACGACGCGTCGGGNTNCG 177
                      ** ****************************************** ******* *** * 

consensus_1057#0      GTTCGNCGATGAGGCGTTCGGCGTNGNNGGTGGAAGNGAAGTTCGNTGCGTGGATGACGT 240
consensus_1057#1      GT-CGGCGATGAGGCGTGCGGCGGCGACGGTGGAAGGGAAGTGCGCTGCGTGGATGACGA 236
                      ** ** *********** *****  *  ******** ***** ** ************* 

consensus_1057#0      AGTNGAAGGACGGGNTCNT 259
consensus_1057#1      AGNCGAAGGACGTGTC--- 252
                      **  ******** *