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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10572 cluster # 10572       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10572#0 length = 552 sequences # 5  
consensus_10572#1 length = 305 sequences # 2  

consensusID : consensus_10572#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 552
fasta sequence
                              [TCACACACAGTTAGCATATCAGTAGTCGTTCACAGTTAGCATATCAGTGCATCATAAACTTGA-CCTTGGCTC-GATCGTACAATCCATCACAAC-TAAAGA-TAGTGGAAATGGGGCACCACCACAAGAACGACGACAAGGCCGCGGCGGCGGCCGGCGGCGACCACCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATGCACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGGGTGAAGGAGGAGATCGCCGCCACCATCGCCGCCGGCAGCGTCGGCCTCGCCATCCACGAGCATCACAAGAAGAAGGAAGCTAAGAAGCATGGCCATCACCATTAGCTACCTACCCTATCACTACTTACTGGACTAGTGTGTCTATTTATTTGATTATTACCATGCATGTACTCTTAGCTAGCATATCGGCTGTATTTTTGTCGACGGATACATGTACATCATCTATCTATTTTTCTTA-ATAATAATGTGAT-TGATTGTG]

[+] EMBL AK063053             [TCACACACAGTTAGCATATCAGTAGTCGTTCACAGTTAGCATATCAGTGCATCATAAACTTGA CCTTGGCTC GATCGTACAATCCATCACAAC TAAAGA TAGTGGAAATGGGGCACCACCACAAGAACGACGACAAGGCCGCGGCGGCGGCCGGCGGCGACCACCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATGCACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGGGTGAAGGAGGAGATCGCCGCCACCATCGCCGCCGGCAGCGTCGGCCTCGCCATCCACGAGCATCACAAGAAGAAGGAAGCTAAGAAGCATGGCCATCACCATTAGCTACCTACCCTATCACTACTTACTGGACTAGTGTGTCTATTTATTTGATTATTACCATGCATGTACTCTTAGCTAGCATATCGGCTGTATTTTTGTCGACGGATACATGTACATCATCTATCTATTTTTCTTA ATAATAATGTGAT TGATTG  ]
[-] EMBL CB964563             [             GCATATCAGTAGTCGTTCACAGTTAGCATATCAGTGCATCATAAACTTGA CCTTGGCTC GATCGTACAATCCATCACAAC TAAAGA TAGTGGAAATGGGGCACCACCACAAGAACGACGACAAGGCCGCGGCGGCGGCCGGCGGCGACCACCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATGCACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGGGTGAAGGAGGAGATCGCCGCCACCATCGCCGCCGGCAGCGTCGGCCTCGCCATCCACGAGCATCACAAGAAGAAGGAAGCTAAGAAGCATGGCCATCACCATTAGCTACCTACCCTATCACTACTTACTGGACTAGTGTGTCTATTTATTTGATTATTACCATGCATGTACTCTTAGCTAGCATATCGGCTGTATTTTTGTCGACGGATACATGTACATCATCTATCTA TTTTCTTA ATA                   ]
[-] EMBL CB964435             [              gcaattccTATTTGGTCACCGGTAGCCTTTCCGGGCATCCTTAACTTGACCCTTGG TCGGTTCGTCCAATCCTTCCCAACTTAAGGATTATTGGAATTGGGCCACCACCCCAAGTTCGCCGCCAAGCCCCCGCCGCCGCCCGCCGGCGACCACCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATGCACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGGGTGAAGGAGGAGATCGCCGCCACCATCGCCGCCGGCAGCGTCGGCCTCGCCATCCACGAGCATCACAAGAAGAAGGAAGCTAAGAAGCATGGCCATCACCATTAGCTACCTACCCTATCACTACTTACTGGACTAGTGTGTCTATTTATTTGATTATTACCATGCATGTACTCTTAGCTAGCATATCGGCTGTATTTTTGTCGACGGATACATGTACATCATCTATCTATTTTTCTTA ATA                   ]
[-] EMBL CB966654             [                                                                                                                                                                      ACCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATGCACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGGGTGAAGGAGGAGATCGCCGCCACCATCGCCGCCGGCAGCGTCGGCCTCGCCATCCACGAGCATCACAAGAAGAAGGAAGCTAAGAAGCATGGCCATCACCATTAGCTACCTACCCTATCACTACTTACTGGACTAGTGTGTCTATTTATTTGATTATTACCATGCATGTACTCTTAGCTAGCATATCGGCTGTATTTTTGTCGACGGATACATGTACATCATCTATCTATTTTTCTTA ATAATAATGTGATCTGATgttg]
[-] EMBL CB966030             [                                                                                                                                                                                                                                                                                                                                                                   AGCATCACAAGAAGAAGGAAGCTAAGAAGCATGGCCATCACCATTAGCTACCTACCCTATCACTACTTACTGGACTAGTGTGTCTATTTATTTGATTATTACCATGCATGTACTCTTAGCTAGCATATC GCTGTATTTTTGTCGACGGATACATGTACATCATCTATCTATTTTTCTTATATAATAATGT ATCTGAT    ]


>consensus_10572#0 TCACACACAGTTAGCATATCAGTAGTCGTTCACAGTTAGCATATCAGTGCATCATAAACT TGACCTTGGCTCGATCGTACAATCCATCACAACTAAAGATAGTGGAAATGGGGCACCACC ACAAGAACGACGACAAGGCCGCGGCGGCGGCCGGCGGCGACCACCGCAAGGAGGAGAAGC ACCACAAGCACATGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCA TGCACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGGGTGAAGG AGGAGATCGCCGCCACCATCGCCGCCGGCAGCGTCGGCCTCGCCATCCACGAGCATCACA AGAAGAAGGAAGCTAAGAAGCATGGCCATCACCATTAGCTACCTACCCTATCACTACTTA CTGGACTAGTGTGTCTATTTATTTGATTATTACCATGCATGTACTCTTAGCTAGCATATC GGCTGTATTTTTGTCGACGGATACATGTACATCATCTATCTATTTTTCTTAATAATAATG TGATTGATTGTG



consensusID : consensus_10572#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 305
fasta sequence
                              [TCATCGACCACACCTGCATCATCAATCTGCCTACATATCGATCGATTGATCTCCTGGTTAATTAGCTAACTAAATTTCCCCGTACGTACGTACACAAGATGTTCGGCCACCACAAGAACGAGGAGAAGATGGCAGCAGCCGGGGCGGCGCCCAAGGACGCCGGCGACTATCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGATCGCCAAGCTCGGCGCCGC-CGCCGCCGGAGCATACGCCATGCATGAGAAGAAGCAGGCGAAGAAGGACCCGGAGCACGCGCGGTCGCACAAGATGAAG]

[+] EMBL CF313839             [TCATCGACCACACCTGCATCATCAATCTGCCTACATATCGATCGATTGATCTCCTGGTTAATTAGCTAACTAAATTTCCCCGTACGTACGTACACAAGATGTTCGGCCACCACAAGAACGAGGAGAAGATGGCAGCAGCCGGGGCGGCGCCCAAGGACGCCGGCGACTATCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGATCGCCAAGCTCGGCGCCGC CGCCGCCGGAGCATACGCCATGCATGAGAAGAAGCAGGCGAAGAAGGACCCGGAGCACGCGCGGTCGCACAAGATGAAG]
[+] EMBL C27651               [              TGCATCATCAATCTGCCTACATATCGATCGATTGATCTCCTGGTTAATTAGCTAACTAAATTTCCCCGTACGTACGTACACAAGATGTTCGGCCACCACAAGANCGAGGAGAAGATNGCAGCA NCGGGG NGCGCCAAAGGACGCCGGCGACTATCGNAAGGAGGAGAAGCACCACAAGCACATNGAGCAGATCGCCAAGCTCGGCGNCGCNCGC  CCGGANCATACGCCATGCATGAGAAGAAGCAGGCGAAGAAGGACCCNGAGCACGCGCNGTCGCACA        ]


>consensus_10572#1 TCATCGACCACACCTGCATCATCAATCTGCCTACATATCGATCGATTGATCTCCTGGTTA ATTAGCTAACTAAATTTCCCCGTACGTACGTACACAAGATGTTCGGCCACCACAAGAACG AGGAGAAGATGGCAGCAGCCGGGGCGGCGCCCAAGGACGCCGGCGACTATCGCAAGGAGG AGAAGCACCACAAGCACATGGAGCAGATCGCCAAGCTCGGCGCCGCCGCCGCCGGAGCAT ACGCCATGCATGAGAAGAAGCAGGCGAAGAAGGACCCGGAGCACGCGCGGTCGCACAAGA TGAAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10572#0      TCACACACAGTTAGCATATCAGTAGTCGTTCA-CAGTTAGCATATCAGTGCATCATAAAC 59
consensus_10572#1      ------TCATCGACCACACCTGCA-TCATCAATCTGCCTACATATCGATCGAT--TGATC 51
                              **   * ** * * * * ** *  * * *    ******  *  **  * * *

consensus_10572#0      TTGACCTTGGCTCGATCG-TACAATCCATCACAACTAAAGATAGTGGAAATGGGGCACCA 118
consensus_10572#1      TCCTGGTTAATTAGCTAACTAAATTTCCCCGTACGTACGTACACAAGATGTTCGG--CCA 109
                       *     **   * * *   ** * * *  *  *  **   * *   **  *  **  ***

consensus_10572#0      CCACAAGAACGACGACAAG---------GCCGCGGCGGCGGCCGG------CGGCGACCA 163
consensus_10572#1      CCACAAGAACGAGGAGAAGATGGCAGCAGCCGGGGCGGCGCCCAAGGACGCCGGCGACTA 169
                       ************ ** ***         **** ******* **        ******* *

consensus_10572#0      CCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGCTTGCCAAGCTCGGCGCCGTCGC 223
consensus_10572#1      TCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGATCGCCAAGCTCGGCGCCGCCGC 229
                        ************************************ * **************** ***

consensus_10572#0      CGCCGGAGCATACGCCATGCACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCG 283
consensus_10572#1      CGCCGGAGCATACGCCATGCATGAGAAGAAGCAGGCGAAGAAGGACCCGGAGCACGCGCG 289
                       ********************* ****** *  ************* ****** * *****

consensus_10572#0      GTCGCACAGGGTGAAGGAGGAGATCGCCGCCACCATCGCCGCCGGCAGCGTCGGCCTCGC 343
consensus_10572#1      GTCGCACAAGATGAAG-------------------------------------------- 305
                       ******** * *****                                            

consensus_10572#0      CATCCACGAGCATCACAAGAAGAAGGAAGCTAAGAAGCATGGCCATCACCATTAGCTACC 403
consensus_10572#1      ------------------------------------------------------------
                                                                                   

consensus_10572#0      TACCCTATCACTACTTACTGGACTAGTGTGTCTATTTATTTGATTATTACCATGCATGTA 463
consensus_10572#1      ------------------------------------------------------------
                                                                                   

consensus_10572#0      CTCTTAGCTAGCATATCGGCTGTATTTTTGTCGACGGATACATGTACATCATCTATCTAT 523
consensus_10572#1      ------------------------------------------------------------
                                                                                   

consensus_10572#0      TTTTCTTAATAATAATGTGATTGATTGTG 552
consensus_10572#1      -----------------------------
                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)