These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10572#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 552 fasta sequence [TCACACACAGTTAGCATATCAGTAGTCGTTCACAGTTAGCATATCAGTGCATCATAAACTTGA-CCTTGGCTC-GATCGTACAATCCATCACAAC-TAAAGA-TAGTGGAAATGGGGCACCACCACAAGAACGACGACAAGGCCGCGGCGGCGGCCGGCGGCGACCACCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATGCACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGGGTGAAGGAGGAGATCGCCGCCACCATCGCCGCCGGCAGCGTCGGCCTCGCCATCCACGAGCATCACAAGAAGAAGGAAGCTAAGAAGCATGGCCATCACCATTAGCTACCTACCCTATCACTACTTACTGGACTAGTGTGTCTATTTATTTGATTATTACCATGCATGTACTCTTAGCTAGCATATCGGCTGTATTTTTGTCGACGGATACATGTACATCATCTATCTATTTTTCTTA-ATAATAATGTGAT-TGATTGTG] [+] EMBL AK063053 [TCACACACAGTTAGCATATCAGTAGTCGTTCACAGTTAGCATATCAGTGCATCATAAACTTGA CCTTGGCTC GATCGTACAATCCATCACAAC TAAAGA TAGTGGAAATGGGGCACCACCACAAGAACGACGACAAGGCCGCGGCGGCGGCCGGCGGCGACCACCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATGCACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGGGTGAAGGAGGAGATCGCCGCCACCATCGCCGCCGGCAGCGTCGGCCTCGCCATCCACGAGCATCACAAGAAGAAGGAAGCTAAGAAGCATGGCCATCACCATTAGCTACCTACCCTATCACTACTTACTGGACTAGTGTGTCTATTTATTTGATTATTACCATGCATGTACTCTTAGCTAGCATATCGGCTGTATTTTTGTCGACGGATACATGTACATCATCTATCTATTTTTCTTA ATAATAATGTGAT TGATTG ] [-] EMBL CB964563 [ GCATATCAGTAGTCGTTCACAGTTAGCATATCAGTGCATCATAAACTTGA CCTTGGCTC GATCGTACAATCCATCACAAC TAAAGA TAGTGGAAATGGGGCACCACCACAAGAACGACGACAAGGCCGCGGCGGCGGCCGGCGGCGACCACCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATGCACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGGGTGAAGGAGGAGATCGCCGCCACCATCGCCGCCGGCAGCGTCGGCCTCGCCATCCACGAGCATCACAAGAAGAAGGAAGCTAAGAAGCATGGCCATCACCATTAGCTACCTACCCTATCACTACTTACTGGACTAGTGTGTCTATTTATTTGATTATTACCATGCATGTACTCTTAGCTAGCATATCGGCTGTATTTTTGTCGACGGATACATGTACATCATCTATCTA TTTTCTTA ATA ] [-] EMBL CB964435 [ gcaattccTATTTGGTCACCGGTAGCCTTTCCGGGCATCCTTAACTTGACCCTTGG TCGGTTCGTCCAATCCTTCCCAACTTAAGGATTATTGGAATTGGGCCACCACCCCAAGTTCGCCGCCAAGCCCCCGCCGCCGCCCGCCGGCGACCACCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATGCACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGGGTGAAGGAGGAGATCGCCGCCACCATCGCCGCCGGCAGCGTCGGCCTCGCCATCCACGAGCATCACAAGAAGAAGGAAGCTAAGAAGCATGGCCATCACCATTAGCTACCTACCCTATCACTACTTACTGGACTAGTGTGTCTATTTATTTGATTATTACCATGCATGTACTCTTAGCTAGCATATCGGCTGTATTTTTGTCGACGGATACATGTACATCATCTATCTATTTTTCTTA ATA ] [-] EMBL CB966654 [ ACCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGCTTGCCAAGCTCGGCGCCGTCGCCGCCGGAGCATACGCCATGCACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCGGTCGCACAGGGTGAAGGAGGAGATCGCCGCCACCATCGCCGCCGGCAGCGTCGGCCTCGCCATCCACGAGCATCACAAGAAGAAGGAAGCTAAGAAGCATGGCCATCACCATTAGCTACCTACCCTATCACTACTTACTGGACTAGTGTGTCTATTTATTTGATTATTACCATGCATGTACTCTTAGCTAGCATATCGGCTGTATTTTTGTCGACGGATACATGTACATCATCTATCTATTTTTCTTA ATAATAATGTGATCTGATgttg] [-] EMBL CB966030 [ AGCATCACAAGAAGAAGGAAGCTAAGAAGCATGGCCATCACCATTAGCTACCTACCCTATCACTACTTACTGGACTAGTGTGTCTATTTATTTGATTATTACCATGCATGTACTCTTAGCTAGCATATC GCTGTATTTTTGTCGACGGATACATGTACATCATCTATCTATTTTTCTTATATAATAATGT ATCTGAT ] consensusID : consensus_10572#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 305 fasta sequence [TCATCGACCACACCTGCATCATCAATCTGCCTACATATCGATCGATTGATCTCCTGGTTAATTAGCTAACTAAATTTCCCCGTACGTACGTACACAAGATGTTCGGCCACCACAAGAACGAGGAGAAGATGGCAGCAGCCGGGGCGGCGCCCAAGGACGCCGGCGACTATCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGATCGCCAAGCTCGGCGCCGC-CGCCGCCGGAGCATACGCCATGCATGAGAAGAAGCAGGCGAAGAAGGACCCGGAGCACGCGCGGTCGCACAAGATGAAG] [+] EMBL CF313839 [TCATCGACCACACCTGCATCATCAATCTGCCTACATATCGATCGATTGATCTCCTGGTTAATTAGCTAACTAAATTTCCCCGTACGTACGTACACAAGATGTTCGGCCACCACAAGAACGAGGAGAAGATGGCAGCAGCCGGGGCGGCGCCCAAGGACGCCGGCGACTATCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGATCGCCAAGCTCGGCGCCGC CGCCGCCGGAGCATACGCCATGCATGAGAAGAAGCAGGCGAAGAAGGACCCGGAGCACGCGCGGTCGCACAAGATGAAG] [+] EMBL C27651 [ TGCATCATCAATCTGCCTACATATCGATCGATTGATCTCCTGGTTAATTAGCTAACTAAATTTCCCCGTACGTACGTACACAAGATGTTCGGCCACCACAAGANCGAGGAGAAGATNGCAGCA NCGGGG NGCGCCAAAGGACGCCGGCGACTATCGNAAGGAGGAGAAGCACCACAAGCACATNGAGCAGATCGCCAAGCTCGGCGNCGCNCGC CCGGANCATACGCCATGCATGAGAAGAAGCAGGCGAAGAAGGACCCNGAGCACGCGCNGTCGCACA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10572#0 TCACACACAGTTAGCATATCAGTAGTCGTTCA-CAGTTAGCATATCAGTGCATCATAAAC 59 consensus_10572#1 ------TCATCGACCACACCTGCA-TCATCAATCTGCCTACATATCGATCGAT--TGATC 51 ** * ** * * * * ** * * * * ****** * ** * * * consensus_10572#0 TTGACCTTGGCTCGATCG-TACAATCCATCACAACTAAAGATAGTGGAAATGGGGCACCA 118 consensus_10572#1 TCCTGGTTAATTAGCTAACTAAATTTCCCCGTACGTACGTACACAAGATGTTCGG--CCA 109 * ** * * * ** * * * * * ** * * ** * ** *** consensus_10572#0 CCACAAGAACGACGACAAG---------GCCGCGGCGGCGGCCGG------CGGCGACCA 163 consensus_10572#1 CCACAAGAACGAGGAGAAGATGGCAGCAGCCGGGGCGGCGCCCAAGGACGCCGGCGACTA 169 ************ ** *** **** ******* ** ******* * consensus_10572#0 CCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGCTTGCCAAGCTCGGCGCCGTCGC 223 consensus_10572#1 TCGCAAGGAGGAGAAGCACCACAAGCACATGGAGCAGATCGCCAAGCTCGGCGCCGCCGC 229 ************************************ * **************** *** consensus_10572#0 CGCCGGAGCATACGCCATGCACGAGAAGCACAAGGCGAAGAAGGAACCGGAGAATGCGCG 283 consensus_10572#1 CGCCGGAGCATACGCCATGCATGAGAAGAAGCAGGCGAAGAAGGACCCGGAGCACGCGCG 289 ********************* ****** * ************* ****** * ***** consensus_10572#0 GTCGCACAGGGTGAAGGAGGAGATCGCCGCCACCATCGCCGCCGGCAGCGTCGGCCTCGC 343 consensus_10572#1 GTCGCACAAGATGAAG-------------------------------------------- 305 ******** * ***** consensus_10572#0 CATCCACGAGCATCACAAGAAGAAGGAAGCTAAGAAGCATGGCCATCACCATTAGCTACC 403 consensus_10572#1 ------------------------------------------------------------ consensus_10572#0 TACCCTATCACTACTTACTGGACTAGTGTGTCTATTTATTTGATTATTACCATGCATGTA 463 consensus_10572#1 ------------------------------------------------------------ consensus_10572#0 CTCTTAGCTAGCATATCGGCTGTATTTTTGTCGACGGATACATGTACATCATCTATCTAT 523 consensus_10572#1 ------------------------------------------------------------ consensus_10572#0 TTTTCTTAATAATAATGTGATTGATTGTG 552 consensus_10572#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||