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Oryza sativa
cluster # 10578 cluster # 10578       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10578#0 length = 1959 sequences # 5  
consensus_10578#1 length = 1320 sequences # 1  
consensus_10578#2 length = 81 sequences # 1  

consensusID : consensus_10578#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1959
fasta sequence
                              [CTTGACAGCCGACCTTGGGGCGGATTTACCGAACATATTTGATCGTTCTTTGCTGGAGTTTATCAATGGCAGCAGGGGTCACTTTTAACTGGATTAAAACCCCACTTGACATCCGGAGATTTCATGACTTTTCTAGTTTAAGTTTTCGATGCCGAAATACTTTTGGATCAATCCAACCTTCCTGGCTGACAACAGACCAGGAACCATCTTTTTCCAAAGTTCGAGTGGCTGCAGATTACTCAGATTCTGTTCCAGATTCAAAGTACACAAGAGA-TCGGGGTTACCATCCTCTTGAAGAAGTTAAAGAACGTCCAAAAAAGAAGGACCTGTCACTGACAGATGTGGAAACTGCTAGAACTGTAGTAGAGGCCAATAGCAAGGGATTA-CTTGTGTTCCCTGCAAGAGTGCATAATGAACCTCATGGGCATGTTGCTTGGTCAGACTTTCAGTATATTGTAGATGACTATGGAGACATTTTCTTTCAAGTACCCGACAGTGAGAACATCTTGGAAGATGATGCTGCAAACAATCCTGTGACAGTTTTGATTGGAATGGATGGCCCTATTATTGGAGAAACTAGTGTGGTGACTAGTGATTTTAGCGACTACATGGATGTTGAAAATTTTATAGACATGCCTGATGAGAACGACAGCAAGATCGATACAGAAATAACTGACATTCTTATAGAGTGGGGGATGCCAGCAACAATGCGTGCAATACATCCAATTTATTTTGCGAAGTGTTTGACAAAGGCTGTTCATGATAAACACAGGGAAAAGATGGATAGTCCATCAAATGGTGTCTCAATTGTAGGATATTTGAGACCTGCTTTCATAGAAGAAGAATCTTATCTAAGGAGCTTATTTCATGGTGAGTGCAATGGTGATGGTTATTCGTCTGATTGGAGAGATGAATGCAAAAGAGAACCTGCACCAGCTTCTGGAACCAATGGCCTAATTGATGATGATAAATCGAGATTTGATTTCACGAATGTGGGAAGTAGCACTGATTCAACAATCTACAAACTGGAAATAATGACGGTTGAGCTGTTTTCCATATATGGGAAGCAGTTGATGATTGATCCACAAGATTTTCAAGATGCAGAACCAGATATTCTTGCAAATTCTGCTTCAGAAATTATAAATCGCATTAAAGAAAACGATGATCAGTGCGCTATGGCACTCAGGTCCCTCTGTCATAGGAAAAAAGGCCTCACTGTCGAGGAGGCTAGCTTGATTAGCATCGACAGTCTCGGTATCGATGTAAGAGCTTTCTCTGGTTTGGAAGCTCGGA-CAGTTAGATTTTCGTTTAATGCGCAGGCACTCTCTGAACGTTCAGCAGAGAAGAAGATAAGGCGAATGCTTTTCCCTCGTCGTAAGAACGTGAAACCTTCTACTGAAGATGAATGTTAACCTATCAAAACCTGGTTAGGACACAAGAGAGTAAAGGGATTCAGCATAAGATGTGCATCCAATCTGATGCGAATTCGTTAGAGATACTGCAAATCTGCCGACTATGAAAATGACCTCATTTCCTGAAGAGTTAGATAACTTTGATCCAGGTTTTGATCTGATTGGTGAAAGAAAAAAGAGAAAAGAAAGAAGGATCACCCATGGTTTCTTGCAAGCAAAGTGGTGGTCTTGTAAAGGTGAAAGAAGTGAAGTAAGATGCTAGCATCAATCCGCAACTGACAAAAAGTTTCATCAGCCACCCATAAATTTGTCATCAAAGAAAAAAAATAAACTGTAAAACAGGCCAGATTAATAAGATCTCTTTGGCCTGTAATAATCTCTCCATTTCCTATCAACCTGTAACTAATTTAACTGCCATTTTTCCCCCNTCATGCCTGAATAAAATGCAACTCCAATGTAAATCCACTGAGAAATCCTGATGTTTTCTGACAAGTGACATTCTCCTTTCTTGACAGGCGTGCGTGCTTGGTCATGAGTATTAAAAAAA]

[+] EMBL AK099921             [CTTGACAGCCGACCTTGGGGCGGATTTACCGAACATATTTGATCGTTCTTTGCTGGAGTTTATCAATGGCAGCAGGGGTCACTTTTAACTGGATTAAAACCCCACTTGACATCCGGAGATTTCATGACTTTTCTAGTTTAAGTTTTCGATGCCGAAATACTTTTGGATCAATCCAACCTTCCTGGCTGACAACAGACCAGGAACCATCTTTTTCCAAAGTTCGAGTGGCTGCAGATTACTCAGATTCTGTTCCAGATTCAAAGTACACAAGAGA TCGGGGTTACCATCCTCTTGAAGAAGTTAAAGAACGTCCAAAAAAGAAGGACCTGTCACTGACAGATGTGGAAACTGCTAGAACTGTAGTAGAGGCCAATAGCAAGGGATTA CTTGTGTTCCCTGCAAGAGTGCATAATGAACCTCATGGGCATGTTGCTTGGTCAGACTTTCAGTATATTGTAGATGACTATGGAGACATTTTCTTTCAAGTACCCGACAGTGAGAACATCTTGGAAGATGATGCTGCAAACAATCCTGTGACAGTTTTGATTGGAATGGATGGCCCTATTATTGGAGAAACTAGTGTGGTGACTAGTGATTTTAGCGACTACATGGATGTTGAAAATTTTATAGACATGCCTGATGAGAACGACAGCAAGATCGATACAGAAATAACTGACATTCTTATAGAGTGGGGGATGCCAGCAACAATGCGTGCAATACATCCAATTTATTTTGCGAAGTGTTTGACAAAGGCTGTTCATGATAAACACAGGGAAAAGATGGATAGTCCATCAAATGGTGTCTCAATTGTAGGATATTTGAGACCTGCTTTCATAGAAGAAGAATCTTATCTAAGGAGCTTATTTCATGGTGAGTGCAATGGTGATGGTTATTCGTCTGATTGGAGAGATGAATGCAAAAGAGAACCTGCACCAGCTTCTGGAACCAATGGCCTAATTGATGATGATAAATCGAGATTTGATTTCACGAATGTGGGAAGTAGCACTGATTCAACAATCTACAAACTGGAAATAATGACGGTTGAGCTGTTTTCCATATATGGGAAGCAGTTGATGATTGATCCACAAGATTTTCAAGATGCAGAACCAGATATTCTTGCAAATTCTGCTTCAGAAATTATAAATCGCATTAAAGAAAACGATGATCAGTGCGCTATGGCACTCAGGTCCCTCTGTCATAGGAAAAAAGGCCTCACTGTCGAGGAGGCTAGCTTGATTAGCATCGACAGTCTCGGTATCGATGTAAGAGCTTTCTCTGGTTTGGAAGCTCGGA CAGTTAGATTTTCGTTTAATGCGCAGGCACTCTCTGAACGTTCAGCAGAGAAGAAGATAAGGCGAATGCTTTTCCCTCGTCGTAAGAACGTGAAACCTTCTACTGAAGATGAATGTTAACCTATCAAAACCTGGTTAGGACACAAGAGAGTAAAGGGATTCAGCATAAGAGGTGCATCCAATCTGATGCGAATTCGTTAGAGATACTGCAAATCTGCCGACTATGAAAATGACCTCATTTCCTGAAGAGTTAGATAACTTTGATCCAGGTTTTGAT                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CF298428             [CTTGACAGCCGACCTTGGGGCGGATTTACCGAACATATTTGATCGTTCTTTGCTGGAGTTTATCAATGGCAGCAGGGGTCACTTTTAACTGGATTAAAACCCCACTTGACATCCGGAGATTTCATGACTTTTCTAGTTTAAGTTTTCGATGCCGAAATACTTTTGGATCAATCCAACCTTCCTGGCTGACAACAGACCAGGAACCATCTTTTTCCAAAGTTCGAGTGGCTGCAGATTACTCAGATTCTGTTCCAGATTCAAAGTACACAAGAGATTCGGGGTTACCATCCTCTTGAAGAAGTTAAAGAACGTCCAAAAAAGAAGGACCTGTCACTGACAGATGTGGAAACTGCTAGAACTGTAGTAGAGGCCAATAGCAAGGGATTACCTTGTGTTCCCTGCAAGAGTGCATAATGAACCTCATGGGCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CF298429             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATAAATCGCATTAAAGAAAACGATGATCAGTGCGCTATGGCACTCAGGTCCCTCTGTCATAGGAAAAAAGGCCTCACTGTCGAGGAGGCTAGCTTGATTAGCATCGACAGTCTCGGTATCGATGTAAGAGCTTTCTCTGGTTTGGAAGCTCGGA CAGTTAGATTTTCGTTTAATGCGCAGGCACTCTCTGAACGTTCAGCAGAGAAGAAGATAAGGCGAATGCTTTTCCCTCGTCGTAAGAACGTGAAACCTTCTACTGAAGAAAAAAAAAAACCTATCAAAACCTGGTTAGGACACAAGAGAGTAAAAAAAAAAAACATAAGATGTGCATCCAATCTGATGCGAATTCGTTAGAGATACTGCAAATCTGCCGACTATGAAAATGACCTCATTTCCTGAAGAGTTAGATAACTTTGAT                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU089730             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             atTGTAAG GCTTTCTCTGGTTTGGAAGCTCGGACCAGTTAGATTTTCGTTTAATGCGCAGGCACTCTCTGAACGTTCAGCAGAGAAGAAGATAAGGCG ATGCTTTTCCCTCGTCGTAAGAACGTGAAACCTTCTACTGAAGATGAATGTTAACCTATCAAAACCTGGTTAGGACACAAGAGAGTAAAGGGATTCAGCATAAGATGTGCATCCAATCTGATGCGAATTCGTTAGAGATACTGCAAATCTGCCGACTATGAAAATGACCTCATTTCCTGAAGAGTTAGATAACTTTGATCCAGGTTTTGATCTGATTGGTGAAAGAAAAAAGAGAAAAGAAAGAAGGATCACCCATGGTTTCTTGCAAGCAAAGTGGTGGTCTTGTAAAGGTGAAAGAAGTGAAGTAAGATGCTAGCATCAATCCGCAACTGACAAAAAGTTTCATCAGCCACCCATAAATTTGTCATCAAAGAAAAAAAATAAACTGTAAAACAGGCCAGATTAATAAGATCTCTTTGGCCTGTAATAATCTCTCCATTTCCTATCAACCTGTAACTAATTTAACTGCCATTTTTCCCCCNTCATGCCTGAATAAAATGCAACTCCAATGTAAATCCACTGAGAAATCCTGATGTTTTCTGACAAGTGACATTCTCCTTTCTTGACAGGCGTGCGTGCTTGGTCATGAGTATTAAAAAAA]
[+] EMBL OSC5911              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GAGAAAAGAAAGAAGGATCACCCATGGTTTCTTGCAAGCAAAGTGGTGGTCTTGTAAAGGTGAAAGAAGTGAAGTAAGATGCTAGCATCAATCCGCAACTGACAAAAAGTTTCATCAGCCACCCATAAATTTGTCATCAAAAAAAAAA                                                                                                                                                                                                                              ]


>consensus_10578#0 CTTGACAGCCGACCTTGGGGCGGATTTACCGAACATATTTGATCGTTCTTTGCTGGAGTT TATCAATGGCAGCAGGGGTCACTTTTAACTGGATTAAAACCCCACTTGACATCCGGAGAT TTCATGACTTTTCTAGTTTAAGTTTTCGATGCCGAAATACTTTTGGATCAATCCAACCTT CCTGGCTGACAACAGACCAGGAACCATCTTTTTCCAAAGTTCGAGTGGCTGCAGATTACT CAGATTCTGTTCCAGATTCAAAGTACACAAGAGATCGGGGTTACCATCCTCTTGAAGAAG TTAAAGAACGTCCAAAAAAGAAGGACCTGTCACTGACAGATGTGGAAACTGCTAGAACTG TAGTAGAGGCCAATAGCAAGGGATTACTTGTGTTCCCTGCAAGAGTGCATAATGAACCTC ATGGGCATGTTGCTTGGTCAGACTTTCAGTATATTGTAGATGACTATGGAGACATTTTCT TTCAAGTACCCGACAGTGAGAACATCTTGGAAGATGATGCTGCAAACAATCCTGTGACAG TTTTGATTGGAATGGATGGCCCTATTATTGGAGAAACTAGTGTGGTGACTAGTGATTTTA GCGACTACATGGATGTTGAAAATTTTATAGACATGCCTGATGAGAACGACAGCAAGATCG ATACAGAAATAACTGACATTCTTATAGAGTGGGGGATGCCAGCAACAATGCGTGCAATAC ATCCAATTTATTTTGCGAAGTGTTTGACAAAGGCTGTTCATGATAAACACAGGGAAAAGA TGGATAGTCCATCAAATGGTGTCTCAATTGTAGGATATTTGAGACCTGCTTTCATAGAAG AAGAATCTTATCTAAGGAGCTTATTTCATGGTGAGTGCAATGGTGATGGTTATTCGTCTG ATTGGAGAGATGAATGCAAAAGAGAACCTGCACCAGCTTCTGGAACCAATGGCCTAATTG ATGATGATAAATCGAGATTTGATTTCACGAATGTGGGAAGTAGCACTGATTCAACAATCT ACAAACTGGAAATAATGACGGTTGAGCTGTTTTCCATATATGGGAAGCAGTTGATGATTG ATCCACAAGATTTTCAAGATGCAGAACCAGATATTCTTGCAAATTCTGCTTCAGAAATTA TAAATCGCATTAAAGAAAACGATGATCAGTGCGCTATGGCACTCAGGTCCCTCTGTCATA GGAAAAAAGGCCTCACTGTCGAGGAGGCTAGCTTGATTAGCATCGACAGTCTCGGTATCG ATGTAAGAGCTTTCTCTGGTTTGGAAGCTCGGACAGTTAGATTTTCGTTTAATGCGCAGG CACTCTCTGAACGTTCAGCAGAGAAGAAGATAAGGCGAATGCTTTTCCCTCGTCGTAAGA ACGTGAAACCTTCTACTGAAGATGAATGTTAACCTATCAAAACCTGGTTAGGACACAAGA GAGTAAAGGGATTCAGCATAAGATGTGCATCCAATCTGATGCGAATTCGTTAGAGATACT GCAAATCTGCCGACTATGAAAATGACCTCATTTCCTGAAGAGTTAGATAACTTTGATCCA GGTTTTGATCTGATTGGTGAAAGAAAAAAGAGAAAAGAAAGAAGGATCACCCATGGTTTC TTGCAAGCAAAGTGGTGGTCTTGTAAAGGTGAAAGAAGTGAAGTAAGATGCTAGCATCAA TCCGCAACTGACAAAAAGTTTCATCAGCCACCCATAAATTTGTCATCAAAGAAAAAAAAT AAACTGTAAAACAGGCCAGATTAATAAGATCTCTTTGGCCTGTAATAATCTCTCCATTTC CTATCAACCTGTAACTAATTTAACTGCCATTTTTCCCCCNTCATGCCTGAATAAAATGCA ACTCCAATGTAAATCCACTGAGAAATCCTGATGTTTTCTGACAAGTGACATTCTCCTTTC TTGACAGGCGTGCGTGCTTGGTCATGAGTATTAAAAAAA



consensusID : consensus_10578#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1320
fasta sequence
                              [CTTGACAGCCGACCTTGGGGCGGATTTACCGAACATATTTGATCGTTCTTTGCTGGAGTTTATCAATGGCAGCGGGGGTCACTTTTAACTGGATTAAAACCCCACTTGACATCCGGAGATTTCATGACTTTTCTAGTTTAAGTTTTCGATGCCGAAATACTTTTGGATCAATCCAACCTTCCTGGCTGACAACAGACCAGGAACCATCTTTTTCCAAAGTTCGAGTGGCTGCAGATTACTCAGATTCTGTTCCAGATTCAAAGTACACAAGAGATCGGGGTTACCATCCTCTTGAAGAAGTTAAAGAACGTCCAAAAAAGAAGGACCTGTCACTGACAGATGTGGAAACTGCTAGAACTGTAGTAGAGGTACCCTGGTGCATCTATACATTTGTTTAGTTACTGATGCATGTAAATCGTTATAATTTTGCATAGGAATGACTTACAAGATTCCTCAATCACTCAACCTTAGGCTGAGTAAATATCTGTAAACTGTAAAAGTTAAGCAATAAAAAATTATTCCTGTTGTAAAACAATTAAACTGGTGATCTTACCTTGTGTATCGAATCCCTATCATACTCTGGATAACTTTTCTATCTTGTCTAGGCCAATAGCAAGGGATTACTTGTGTTCCCTGCAAGAGTGCATAATGAACCTCATGGGCATGTTGCTTGGTCAGACTTTCAGTATATTGTAGATGACTATGGAGACATTTTCTTTCAAGTACCCGACAGTGAGAACATCTTGGAAGATGATGCTGCAAACAATCCTGTGACAGTTTTGATTGGAATGGATGGCCCTATTATTGGAGAAACTAGTGTGGTGACTAGTGATTTTAGCGACTACATGGATGTTGAAAATTTTATAGACATGCCTGATGAGAACGACAGCAAGGTTTGCCAAATAAATCATCGCCTGCTTTCAGTTGGTTTTATGACAAGTTTTCTATCAGCAACAATTACTGTCATTAGTTGTTGATATTTCCTTTGTGATATGTCGCAGATCGATACAGAATTAACTGACATTCTTATAGAGTGGGGGATGCCAGCAACAATGCGTGCAATACATCCAATTTATTTTGCGAAGTGTTTGACAAAGGTAAACCGTCAAAAGTTATTGCAAGCATCAGCAACCATTGAAATAGTGGAGCAGATGAAAACTTTAACTAGGATAACTTTCATAAATGTATTGGCAATGTGAACAATGAATATACTGTGAGTGATTAGTTAATTCCAACCTACATCATATTCTTAGAAATAATGTTGTGAAGGGTGCAAAGTCTTTATCTTCTGGTAACAAAAGTAAGAGCCTGGATCTCAAC]

[+] EMBL AK064490             [CTTGACAGCCGACCTTGGGGCGGATTTACCGAACATATTTGATCGTTCTTTGCTGGAGTTTATCAATGGCAGCGGGGGTCACTTTTAACTGGATTAAAACCCCACTTGACATCCGGAGATTTCATGACTTTTCTAGTTTAAGTTTTCGATGCCGAAATACTTTTGGATCAATCCAACCTTCCTGGCTGACAACAGACCAGGAACCATCTTTTTCCAAAGTTCGAGTGGCTGCAGATTACTCAGATTCTGTTCCAGATTCAAAGTACACAAGAGATCGGGGTTACCATCCTCTTGAAGAAGTTAAAGAACGTCCAAAAAAGAAGGACCTGTCACTGACAGATGTGGAAACTGCTAGAACTGTAGTAGAGGTACCCTGGTGCATCTATACATTTGTTTAGTTACTGATGCATGTAAATCGTTATAATTTTGCATAGGAATGACTTACAAGATTCCTCAATCACTCAACCTTAGGCTGAGTAAATATCTGTAAACTGTAAAAGTTAAGCAATAAAAAATTATTCCTGTTGTAAAACAATTAAACTGGTGATCTTACCTTGTGTATCGAATCCCTATCATACTCTGGATAACTTTTCTATCTTGTCTAGGCCAATAGCAAGGGATTACTTGTGTTCCCTGCAAGAGTGCATAATGAACCTCATGGGCATGTTGCTTGGTCAGACTTTCAGTATATTGTAGATGACTATGGAGACATTTTCTTTCAAGTACCCGACAGTGAGAACATCTTGGAAGATGATGCTGCAAACAATCCTGTGACAGTTTTGATTGGAATGGATGGCCCTATTATTGGAGAAACTAGTGTGGTGACTAGTGATTTTAGCGACTACATGGATGTTGAAAATTTTATAGACATGCCTGATGAGAACGACAGCAAGGTTTGCCAAATAAATCATCGCCTGCTTTCAGTTGGTTTTATGACAAGTTTTCTATCAGCAACAATTACTGTCATTAGTTGTTGATATTTCCTTTGTGATATGTCGCAGATCGATACAGAATTAACTGACATTCTTATAGAGTGGGGGATGCCAGCAACAATGCGTGCAATACATCCAATTTATTTTGCGAAGTGTTTGACAAAGGTAAACCGTCAAAAGTTATTGCAAGCATCAGCAACCATTGAAATAGTGGAGCAGATGAAAACTTTAACTAGGATAACTTTCATAAATGTATTGGCAATGTGAACAATGAATATACTGTGAGTGATTAGTTAATTCCAACCTACATCATATTCTTAGAAATAATGTTGTGAAGGGTGCAAAGTCTTTATCTTCTGGTAACAAAAGTAAGAGCCTGGATCTCAAC]


>consensus_10578#1 CTTGACAGCCGACCTTGGGGCGGATTTACCGAACATATTTGATCGTTCTTTGCTGGAGTT TATCAATGGCAGCGGGGGTCACTTTTAACTGGATTAAAACCCCACTTGACATCCGGAGAT TTCATGACTTTTCTAGTTTAAGTTTTCGATGCCGAAATACTTTTGGATCAATCCAACCTT CCTGGCTGACAACAGACCAGGAACCATCTTTTTCCAAAGTTCGAGTGGCTGCAGATTACT CAGATTCTGTTCCAGATTCAAAGTACACAAGAGATCGGGGTTACCATCCTCTTGAAGAAG TTAAAGAACGTCCAAAAAAGAAGGACCTGTCACTGACAGATGTGGAAACTGCTAGAACTG TAGTAGAGGTACCCTGGTGCATCTATACATTTGTTTAGTTACTGATGCATGTAAATCGTT ATAATTTTGCATAGGAATGACTTACAAGATTCCTCAATCACTCAACCTTAGGCTGAGTAA ATATCTGTAAACTGTAAAAGTTAAGCAATAAAAAATTATTCCTGTTGTAAAACAATTAAA CTGGTGATCTTACCTTGTGTATCGAATCCCTATCATACTCTGGATAACTTTTCTATCTTG TCTAGGCCAATAGCAAGGGATTACTTGTGTTCCCTGCAAGAGTGCATAATGAACCTCATG GGCATGTTGCTTGGTCAGACTTTCAGTATATTGTAGATGACTATGGAGACATTTTCTTTC AAGTACCCGACAGTGAGAACATCTTGGAAGATGATGCTGCAAACAATCCTGTGACAGTTT TGATTGGAATGGATGGCCCTATTATTGGAGAAACTAGTGTGGTGACTAGTGATTTTAGCG ACTACATGGATGTTGAAAATTTTATAGACATGCCTGATGAGAACGACAGCAAGGTTTGCC AAATAAATCATCGCCTGCTTTCAGTTGGTTTTATGACAAGTTTTCTATCAGCAACAATTA CTGTCATTAGTTGTTGATATTTCCTTTGTGATATGTCGCAGATCGATACAGAATTAACTG ACATTCTTATAGAGTGGGGGATGCCAGCAACAATGCGTGCAATACATCCAATTTATTTTG CGAAGTGTTTGACAAAGGTAAACCGTCAAAAGTTATTGCAAGCATCAGCAACCATTGAAA TAGTGGAGCAGATGAAAACTTTAACTAGGATAACTTTCATAAATGTATTGGCAATGTGAA CAATGAATATACTGTGAGTGATTAGTTAATTCCAACCTACATCATATTCTTAGAAATAAT GTTGTGAAGGGTGCAAAGTCTTTATCTTCTGGTAACAAAAGTAAGAGCCTGGATCTCAAC



consensusID : consensus_10578#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 81
fasta sequence
                              [AGAAATCCTGATGTTTTCTGACAAGTGACATTCTCCTTTCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF309176             [AGAAATCCTGATGTTTTCTGACAAGTGACATTCTCCTTTCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_10578#2 AGAAATCCTGATGTTTTCTGACAAGTGACATTCTCCTTTCTTGAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10578#0      CTTGACAGCCGACCTTGGGGCGGATTTACCGAACATATTTGATCGTTCTTTGCTGGAGTT 60
consensus_10578#1      CTTGACAGCCGACCTTGGGGCGGATTTACCGAACATATTTGATCGTTCTTTGCTGGAGTT 60
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      TATCAATGGCAGCAGGGGTCACTTTTAACTGGATTAAAACCCCACTTGACATCCGGAGAT 120
consensus_10578#1      TATCAATGGCAGCGGGGGTCACTTTTAACTGGATTAAAACCCCACTTGACATCCGGAGAT 120
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      TTCATGACTTTTCTAGTTTAAGTTTTCGATGCCGAAATACTTTTGGATCAATCCAACCTT 180
consensus_10578#1      TTCATGACTTTTCTAGTTTAAGTTTTCGATGCCGAAATACTTTTGGATCAATCCAACCTT 180
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      CCTGGCTGACAACAGACCAGGAACCATCTTTTTCCAAAGTTCGAGTGGCTGCAGATTACT 240
consensus_10578#1      CCTGGCTGACAACAGACCAGGAACCATCTTTTTCCAAAGTTCGAGTGGCTGCAGATTACT 240
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      CAGATTCTGTTCCAGATTCAAA-GTACACAAGAGATCGGGGTTACCATCCTCTTGAAGAA 299
consensus_10578#1      CAGATTCTGTTCCAGATTCAAA-GTACACAAGAGATCGGGGTTACCATCCTCTTGAAGAA 299
consensus_10578#2      -----------AGAAATCCTGATGTTTTCTGACAAGTGACATT-CTCCTTTCTTGAAAAA 48
                                    * ** *  * **   *     *  *   ** *     ******* **

consensus_10578#0      GTTAAAGAACGTCCAAAAAAGAAGGACCTGTCACTGACAGATGTGGAAACTGCTAGAACT 359
consensus_10578#1      GTTAAAGAACGTCCAAAAAAGAAGGACCTGTCACTGACAGATGTGGAAACTGCTAGAACT 359
consensus_10578#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------------- 81
                          *** **     ****** **  *      *                           

consensus_10578#0      GTAGTAGAGGCCAATAGCAAGGGATTACTTGTGTTCCCTGCAAGAGTGCATAATGAACCT 419
consensus_10578#1      GTAGTAGAGG----TACC---------CTGGTGCATC-TATACATTTGTTTAGTTA--CT 403
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      CATGGGCATGTTGCTTGGTCAGACTTTCAGTATATTGTAGATGACTATGGAGACATTTTC 479
consensus_10578#1      GATG--CATGTAAATCGTTATAATTTT--GCATAG---GAATGACTTACAAGA-----TT 451
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      TTTCAAGTACCCGACAGTGAGAACATCTTGGAAGATGATGCTGCAAACAATCCTGTGACA 539
consensus_10578#1      CCTCAATCACTCAACCTTAGG-----CTGAGTAAATAT--CTGTAAAC-----TGTAAAA 499
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      GTTTTGATTGGAATGGATGGCCCTATTATTGGAGAA----ACTAGTG-TGGTGACTAGTG 594
consensus_10578#1      GTTAAGCAATAAAAAATTATTCCTGTTGTAAAACAATTAAACTGGTGATCTTACCTTGTG 559
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      ATTTTAGCGACTACATGGATGTTGAAAATTTTATAGACATGCCTGATGAGAACGACAGCA 654
consensus_10578#1      TATCGAATCCCTATCATACTCTGGATAACTTTTCTATCTTGTCT----AGGCCAATAGCA 615
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      AGATCGATACAGAAATAACTGACATTCTTATAGAGTGGGGGATGCCAGCAACAATGCGTG 714
consensus_10578#1      AGGG-ATTACTTGTGTTCCCTGCAAGAGTGCATAATGAACCTCATGGGCA-TGTTGCTTG 673
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      -CAATACATCCAATTTATTTTGCGAAGTGTTTGACAAAGGCTGTTCATGATAAACACAGG 773
consensus_10578#1      GTCAGACTTTCAGTATATTGT---AGATGACT-ATGGAGACATTTTCTTTCAAGTACCCG 729
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      GAAAAGATGGATAGTCCATCAAATGGTGTCTCAATTGTAGGATATTTGAGACCTGCTTTC 833
consensus_10578#1      ACAGTGA-GAACATCTTGGAAGATGATGCTGCAA----ACAAT-CCTGTGACA-GTTTTG 782
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      ATAGAAGAAGAATCTTATCTAAGGAGCTTATTTCATGGTGAGTGCAATGGTGATGGTTAT 893
consensus_10578#1      ATTGGAATGGAT-----------GGCCCTATTAT-TGGAGAAACTAGTG-TGGTGACTAG 829
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      TCGTCTGATTGGAGAGATGAATGCAAAAGAGAACCTGCACCAGCTTC-TGGAACCAATGG 952
consensus_10578#1      TGATTTTAGCGACTACATGGATGTTGAAAATTTTATAGACATGCCTGATGAGAACGACAG 889
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      CCTAATTGATGATGATAAATCGAGATTTGATTTCA-CGAATGTGGGAAGTAGCACTGATT 1011
consensus_10578#1      CAAGGTTTGCCA-AATAAATCATCGCCTGCTTTCAGTTGGTTTTATGACAAGTTTTCTAT 948
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      CAACAATCTACAAACTGGAAATAATGACGGTTGAGCTGTTTTCCATATATGGGAAGCAGT 1071
consensus_10578#1      CAGCAAC--AATTACTGTCATTAGTTGTTGATATTTCCTTTGTGATATGTCGCAGATCGA 1006
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      TG-ATGATTGATCCACAAGATTTTCAAGATGCAGA----ACCAGATATTCTTGCAAATTC 1126
consensus_10578#1      TACAGAATTAACTGACATTCTTATAGAGTGGGGGATGCCAGCAACAATGCGTGCAATACA 1066
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      TGCTTCAGAAATTATAAATCGCATTAAAGAAAACGATGATCAGTGCGCTATGGCACTCAG 1186
consensus_10578#1      TCCAATTTATTTTGCGAAGTGTTTGACAAAGGTAAACCGTCAAAA-GTTATTGCAAGCA- 1124
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      GTCCCTCTGTCATAGGAAAAAAGGCCTCACTGTCGAGGAGGCTAGCTTGATTAGCATCGA 1246
consensus_10578#1      --TCAGCAACCATTGAAATAGTGGA---GCAGATGAAAACTTTAACTAGGATAACTTTCA 1179
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      CAGTCTCGGTATCGATGTAAGAGCTTTCTCTGGTTTGGAAGCTCGGACAGTTA-GATTTT 1305
consensus_10578#1      TAAATGTATTGGCAATGTGAACAATGAATATACTGTGAGTGATTAGTTAATTCCAACCTA 1239
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      CGTTTAATGCGCAGGCACTCTCTGAACGTTCAGCAGAGAAGAAGATAAGGCGAATGCTTT 1365
consensus_10578#1      CATCATATTCTTAGAAAT------AATGTT-----GTGAAGGGTGCAAAGT---CTTTAT 1285
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      TCCCTCGTCGTAAGAACGTGAAACCTTCTACTGAAGATGAATGTTAACCTATCAAAACCT 1425
consensus_10578#1      CTTCTGGTAACAAAAGTAAGAG-CCTGGATCTCAAC------------------------ 1320
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      GGTTAGGACACAAGAGAGTAAAGGGATTCAGCATAAGATGTGCATCCAATCTGATGCGAA 1485
consensus_10578#1      ------------------------------------------------------------
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      TTCGTTAGAGATACTGCAAATCTGCCGACTATGAAAATGACCTCATTTCCTGAAGAGTTA 1545
consensus_10578#1      ------------------------------------------------------------
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      GATAACTTTGATCCAGGTTTTGATCTGATTGGTGAAAGAAAAAAGAGAAAAGAAAGAAGG 1605
consensus_10578#1      ------------------------------------------------------------
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      ATCACCCATGGTTTCTTGCAAGCAAAGTGGTGGTCTTGTAAAGGTGAAAGAAGTGAAGTA 1665
consensus_10578#1      ------------------------------------------------------------
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      AGATGCTAGCATCAATCCGCAACTGACAAAAAGTTTCATCAGCCACCCATAAATTTGTCA 1725
consensus_10578#1      ------------------------------------------------------------
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      TCAAAGAAAAAAAATAAACTGTAAAACAGGCCAGATTAATAAGATCTCTTTGGCCTGTAA 1785
consensus_10578#1      ------------------------------------------------------------
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      TAATCTCTCCATTTCCTATCAACCTGTAACTAATTTAACTGCCATTTTTCCCCCNTCATG 1845
consensus_10578#1      ------------------------------------------------------------
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      CCTGAATAAAATGCAACTCCAATGTAAATCCACTGAGAAATCCTGATGTTTTCTGACAAG 1905
consensus_10578#1      ------------------------------------------------------------
consensus_10578#2      ------------------------------------------------------------
                                                                                   

consensus_10578#0      TGACATTCTCCTTTCTTGACAGGCGTGCGTGCTTGGTCATGAGTATTAAAAAAA 1959
consensus_10578#1      ------------------------------------------------------
consensus_10578#2      ------------------------------------------------------
                                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)