cluster # 10583

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Oryza sativa
cluster # 10583 cluster # 10583 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10583#0 length = 614 sequences # 6

consensus_10583#1 length = 272 sequences # 1

consensusID : consensus_10583#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 614
fasta sequence

                              [GAGTAAAAACTCGTTGGCGACACTGACAGTCTCCTCTTCC-CCACTGGCCTAGGGCAAGAGATCGACGAGAGGAGCGGAGGGAGGAGGAGGAGATGGGCGGAGTGGAGCAGGAGCAGCTGCTCAGCCTGGGCGTCCTCATCGACATCGTCGACGAGCAGTGGATGCGCGACACCCTCCCAGCCGACGATGTCCCCGTGCCGCCCGCCATGGCCGTGAAGACGGAGGAGGCGGAGGATCCAGCACCCGCCA---ATCAGG--AAAGCCAA--CCA-GC-ACAA--GGGG-AT-G-TGTGGC-GTGA-TTTCA-CATTGGAGAATCTCTGATCACTTGTGACCTACAAGTGCTTCCAGAGATGAATATACCATGCTGGGAATCTAGGAGCTACGTGGTCATTGCAATTTCTGAGC-TTCATATAACTAT-AAGGTCATCTGAACTTAGCGTACTATCTGGTTTTGTTTCAGCTGTAGTTCGTCGAACCCATGCTTTAAACCGATGTAAATGCTCCAGATATTGGTAGCACATTGCTGCATGATGACACCGAA-CCTTGTGATGAGAAATTATATGTTGTGAACTATGATGGTGATGAGAACAGTCATTCAGATCTGGAACATATCAAATCACTGGTA]

[+] EMBL CF302270             [GAGTAAAAACTCGTTGGCGACACTGACAGTCTCCTCTTCC CCACTGGCCTAGGGCAAGAGATCGACGAGAGGAGCGGAGGGAGGAGGAGGAGATGGGCGGAGTGGAGCAGGAGCAGCTGCTCAGCCTGGGCGTCCTCATCGACATCGTCGACGAGCAGTGGATGCGCTACACCCTCCCAGCCGACGATGTCCCCGTGCCGCCCGCCATGGCCGTGAATACGGAGGAGGCGGAGGATCCAGCACCCGCCA   ATCAGG  AAAGCCAA  CCA GC ACAA  GGGG AT G TGTGGC GTGA TTTCA CATTGGAGAATCTCTGATCACTTGTGACCTACAAGTGCTTCCAGAGATGAATATACCATGCTGGGAATCTAGGAGCTACGTGGTCATTGCAATTTCTGAGC TTCATATAACTAT AAGGTCATCTGAACTTAGCG                                                                                                                                                                                           ]
[+] EMBL AK103878             [                     ACTGACAGTCTCCTCTTCCACCACTGGCCTAGGGCAAGAGATCGACGAGAGGAGCGGAGGGAGGAGGAGGAGATGGGCGGAGTGGAGCAGGAGCAGCTGCTCAGCCTGGGCGTCCTCATCGACATCGTCGACGAGCAGTGGATGCGCGACACCCTCCCAGCCGACGATGTCCCCGTGCCGCCCGCCATGGCCGTGAAGACGGAGGAGGCGGAGGATCCAGCACCCGCCA   ATCAGG  AAAGCCAA  CCA GC ACAA  GGGG AT G TGTGGC GTGA TTTCA CATTGGAGAATCTCTGATCACTTGTGACCTACAAGTGCTTCCAGAGATGAATATACCATGCTGGGAATCTAGGAGCTACGTGGTCATTGCAATTTCTGAGC TTCATATAACTAT AAGGTCATCTGAACTTAGCGTACTATCTGGTTTTGTTTCAGCTGTAGTTCGTCGAACCCATGCTTTAAACCGATGTAAATGCTCCAGATATTGGTAGCACATTGCTGCATGATGACACCGAA CCTTGTGATGAGAAATTATATGTTGTGAACTATGATGGTGATGAGAACAGTCATTCAGATCTGGAACATATCAAATCACTGGTA]
[+] EMBL CB685954             [                                CCTCTTCC CCACTGGCCTAGGGCAAGAGATCGACGAGAGGAGCGGAGGGAGGAGGAGGAGATGGGCGGAGTGGAGCAGGAGCAGCTGCTCAGCCTGGGCGTCCTCATCGACATCGTCGACGAGCAGTGGATGCGCGACACCCTCCCAGCCGACGATGTCCCCGTGCCGCCCGCCATGGCCGTGAAGACGGAGGAGGCGGAGGATCCAGCACCCGCCA   ATCAGG  AAAGCCAA  CCA GC ACAA  GGGG AT G TGTGGC GTGA TTTCA CATTGGAGAATCTCTGATCACTTGTGACCTACAAGTGCTTCCAGAGATGAATATACCATGCTGGGAATCTAGGAGCTACGTGGTCATTGCAATTTCTGAGC TTCATATAACTAT AAGGTCATCTGAACTTAGCGTACTATCTGGTTTTGTTTCAGCTGTAGTTCGTCGAACCCATGCTTTAAACCGATGTAAATGCTCCAGATATTGGTAGCACATTGCTGCATGATGACACCGAA CCTTGTGATGAGAAATTATATGTTGTGAACTATGATGGTGATGAGAACAGTCATTC                            ]
[+] EMBL OS1321604            [                                  TCTTCCACCACTGGCCTAGGGCAAGAGATCGACGAGAGGAGCGGAGGGAGGAGGAGGAGATGGGCGGAGTGGAGCAGGAGCAGCTGCTCAGCCTGGGCGTCCTCATCGACATCGTCGACGAGCAGTGGATGCGCGACACCCTCCCAGCCGACGATGTCCCCGTGCCGCCCGCCATGGCCGTNAAGACGGAGGAGGCGGAGGATCCAGCACCCGCCATAGATCAGG  AAAGCCAA  CCA GC ACAA  GGGG AT G TGTGGC GTGA TTTCA CATTGGAGAATCTCTGATCACTTGTGACCTACAAGTGCTTCCAGAGATGAATATACCATGCTGGGAATCTAGGAGCTACGTGGTCATTTCAATTTCTGAGCTTTNATATAACTATAAAGGTCATCTGAACTTAGNGTACTATCT                                                                                                                                                                                   ]
[+] EMBL AU088739             [                                                                                                                                                                                                                                                           attcCAGGGAAAAGCCAAACCCANGCAACAAAGGGGGAATCGTTNTGGCGGTGATTTTCANCATTGGAGAATCTCTGATCACTTGTGACCTACAAGTGCTTCCAGAGATGAATATACCATGCTGGGAATCTAGGAGCTACGTGGTCATTGCAATTTCTGAGC TTCATATAACTAT AAGGTCATCTGAACTTAGCGTACTATCTGGTTTTGTTTCAGCTGTAGTTCGTCGAACCCATGCTTTAAACCGATGTAAATGCTCCAGATATTGGTAGCACATTGCTGCATGATGACACCGAA CCTTGTGATGAGAAATTATATGTTGTGAACTATGATGGTGATGAGAACAGTCATTCAGATCTGGAACATATCAAAaaaaa    ]
[-] EMBL CF302269             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CAGCTGTAGTTCGTCGAACCCATGCTTTAAACCGATGTAAATGCTCCAGATATTGGTAGCACATTGCTGCATGATGACACCGAACCCTTGTGATGAGAAATTATATGTTGTGAACTATGATGGTGATGAGAACAGTCATTCAaaaaa                      ]




>consensus_10583#0
GAGTAAAAACTCGTTGGCGACACTGACAGTCTCCTCTTCCCCACTGGCCTAGGGCAAGAG
ATCGACGAGAGGAGCGGAGGGAGGAGGAGGAGATGGGCGGAGTGGAGCAGGAGCAGCTGC
TCAGCCTGGGCGTCCTCATCGACATCGTCGACGAGCAGTGGATGCGCGACACCCTCCCAG
CCGACGATGTCCCCGTGCCGCCCGCCATGGCCGTGAAGACGGAGGAGGCGGAGGATCCAG
CACCCGCCAATCAGGAAAGCCAACCAGCACAAGGGGATGTGTGGCGTGATTTCACATTGG
AGAATCTCTGATCACTTGTGACCTACAAGTGCTTCCAGAGATGAATATACCATGCTGGGA
ATCTAGGAGCTACGTGGTCATTGCAATTTCTGAGCTTCATATAACTATAAGGTCATCTGA
ACTTAGCGTACTATCTGGTTTTGTTTCAGCTGTAGTTCGTCGAACCCATGCTTTAAACCG
ATGTAAATGCTCCAGATATTGGTAGCACATTGCTGCATGATGACACCGAACCTTGTGATG
AGAAATTATATGTTGTGAACTATGATGGTGATGAGAACAGTCATTCAGATCTGGAACATA
TCAAATCACTGGTA

consensusID : consensus_10583#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 272
fasta sequence

                              [AGAGGACGAGACAAGGGGGGTCATTGCAATTTTTGAGCTTCATATAACTATAAGGTCATCTGAACTTAGCATACTATCTGGTTTTGTTTCAGCTGTAGTTCGTCGAACCCATGCTTTAAACCGATGTAAATGCTCCAGATATTGGTAGCACATTGCTGCATGATGACACCGAACCCTGTGATGAGAAATTATATGTTGTGAACTATGATGGTGATGAGAACAGTTATTCAGATCTGGAACATATCAAATCACTGGTAAAAAAAAAAAAAAAA]

[-] EMBL CA761918             [AGAGGACGAGACAAGGGGGGTCATTGCAATTTTTGAGCTTCATATAACTATAAGGTCATCTGAACTTAGCATACTATCTGGTTTTGTTTCAGCTGTAGTTCGTCGAACCCATGCTTTAAACCGATGTAAATGCTCCAGATATTGGTAGCACATTGCTGCATGATGACACCGAACCCTGTGATGAGAAATTATATGTTGTGAACTATGATGGTGATGAGAACAGTTATTCAGATCTGGAACATATCAAATCACTGGTAAAAAAAAAAAAAAAA]




>consensus_10583#1
AGAGGACGAGACAAGGGGGGTCATTGCAATTTTTGAGCTTCATATAACTATAAGGTCATC
TGAACTTAGCATACTATCTGGTTTTGTTTCAGCTGTAGTTCGTCGAACCCATGCTTTAAA
CCGATGTAAATGCTCCAGATATTGGTAGCACATTGCTGCATGATGACACCGAACCCTGTG
ATGAGAAATTATATGTTGTGAACTATGATGGTGATGAGAACAGTTATTCAGATCTGGAAC
ATATCAAATCACTGGTAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10583#0      GAGTAAAAACTCGTTGGCGACACTGACAGTCTCCTCTTCCCCACTGGCCTAGGGCAAGAG 60
consensus_10583#1      ------------------------------------------------------------
                                                                                   

consensus_10583#0      ATCGACGAGAGGAGCGGAGGGAGGAGGAGGAGATGGGCGGAGTGGAGCAGGAGCAGCTGC 120
consensus_10583#1      ------------------------------------------------------------
                                                                                   

consensus_10583#0      TCAGCCTGGGCGTCCTCATCGACATCGTCGACGAGCAGTGGATGCGCGACACCCTCCCAG 180
consensus_10583#1      ------------------------------------------------------------
                                                                                   

consensus_10583#0      CCGACGATGTCCCCGTGCCGCCCGCCATGGCCGTGAAGACGGAGGAGGCGGAGGATCCAG 240
consensus_10583#1      ------------------------------------------------------------
                                                                                   

consensus_10583#0      CACCCGCCAATCAGGAAAGCCAACCAGCACAAGGGGATGTGTGGCGTGATTTCACATTGG 300
consensus_10583#1      ------------------------------------------------------------
                                                                                   

consensus_10583#0      AGAATCTCTGATCACTTGTGACCTACAAGTGCTTCCAGAGATGAATATACCATGCTGGGA 360
consensus_10583#1      ---------------------------------------------------------AGA 3
                                                                                 **

consensus_10583#0      ATCTAGGAGCTACGTGGTCATTGCAATTTCTGAGCTTCATATAACTATAAGGTCATCTGA 420
consensus_10583#1      GGACGAGACAAGGGGGGTCATTGCAATTTTTGAGCTTCATATAACTATAAGGTCATCTGA 63
                             **     * ************** ******************************

consensus_10583#0      ACTTAGCGTACTATCTGGTTTTGTTTCAGCTGTAGTTCGTCGAACCCATGCTTTAAACCG 480
consensus_10583#1      ACTTAGCATACTATCTGGTTTTGTTTCAGCTGTAGTTCGTCGAACCCATGCTTTAAACCG 123
                       ******* ****************************************************

consensus_10583#0      ATGTAAATGCTCCAGATATTGGTAGCACATTGCTGCATGATGACACCGAACCTTGTGATG 540
consensus_10583#1      ATGTAAATGCTCCAGATATTGGTAGCACATTGCTGCATGATGACACCGAACCCTGTGATG 183
                       **************************************************** *******

consensus_10583#0      AGAAATTATATGTTGTGAACTATGATGGTGATGAGAACAGTCATTCAGATCTGGAACATA 600
consensus_10583#1      AGAAATTATATGTTGTGAACTATGATGGTGATGAGAACAGTTATTCAGATCTGGAACATA 243
                       ***************************************** ******************

consensus_10583#0      TCAAATCACTGGTA--------------- 614
consensus_10583#1      TCAAATCACTGGTAAAAAAAAAAAAAAAA 272
                       **************