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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10586#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1377 fasta sequence
[CAGCATATCTCTTGCTATCTTGCAATTGCAAATTAGTTATACTCGTAGCTACTGCGCGCGCACTAATTGACTACACAAGCAAATATGGGTTCTCCTTCTGCCAAGTACTTGCTGTTTAGCCTTGCAATCCTGCTGGTCCTGAGTAGCCAGCAGCAAGCTCTGCTGCCTTCGGCATTCGCCCGCCAGTTGGTTCCGATGCCCACGAACACTGCCGCCGGTAAGAATAACATCAGTGTTAATTACCAGTTCCATCTGTATATGTTTTGTGAAATATCATGTGGAGAAACTAACCACTACATCTCTTTGAACATTTGGAGTTGCGGTTCTTTCTTCTAGCGTGTGTTTGGCCCTCCCCTTTTTAACCTCTACTCTCTTATTTCTACTTGCATGTTTCTCGAACTATTAAACGATAATTTTTTTAAAAAGTTATGTATATAAAAAAACTATTTTTAAAAAATATTAATTTTTTCTTCTAATTTTGATAAGCTAATACTTAATTAATCATATGGTTACGAGTCCCTCCATTTTTGCATGTGCCCAAGACCTTCATTGCGAAACAAAGCCTTAATTAAGTATAGCTAGCTATGTCTACATACTTTCTCTATTTAAAATATAATAATTGCCTCAGATTTAAATTTATCGAGGAGGAATTACTTTGAACGTTTTCTGGTTTAGTATATATTTTTTTATATATATTGGATTTTTTTTTGAAGTAACACATACTCCTACGTACATTAATTAACTGTTTCCATTCGCATGCGTGATGGAGCAATCGACAGGCCACGCAGATGTCACGGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAAGATCTGCCGAGTTTTACGTATCTGCAAACGATCATCGTCGGCCGCAACATCGGCCAAGCCGTGATGTGTCAACGACGGCAAATGCATGCACGCGGGAATAAATAATGGAGGCACCGATTAGGATCAACAATATGGTTAGTCCATTAAATATGTGTGTAAGCTCGATCGATATGGAATAATGAGAAACAAATAAACAATGAGAAACAAATATTCACCATGTTTATTACTACCTCTGTTTTCAAATAAATAGTATTGATTAGTGTAATTTTGAACTAACCGGCATCAAACAAAAAGAAACAGAGAGATACTTGTTTACGTTACTTCTTTTGTATACGTATCCAGCCGCGATGTTCGGAAACTGTGTAGGATCGAGATTGGCATCGATCAGTAAGGGCATCAACAATGTTACTTTTTAGCTGCCGGTAAGAAGCATTAAATGCTCTTTTCCTATCCGGTAGCAAGCTCTGTGAGAGTGGCGAAGAATTAAAATCTGGTGATAATATCTATTACCGGTATATTACTACCGGTGAAGAAGAGATAAAT]
[+] EMBL AK069626 [CAGCATATCTCTTGCTATCTTGCAATTGCAAATTAGTTATACTCGTAGCTACTGCGCGCGCACTAATTGACTACACAAGCAAATATGGGTTCTCCTTCTGCCAAGTACTTGCTGTTTAGCCTTGCAATCCTGCTGGTCCTGAGTAGCCAGCAGCAAGCTCTGCTGCCTTCGGCATTCGCCCGCCAGTTGGTTCCGATGCCCACGAACACTGCCGCCGGTAAGAATAACATCAGTGTTAATTACCAGTTCCATCTGTATATGTTTTGTGAAATATCATGTGGAGAAACTAACCACTACATCTCTTTGAACATTTGGAGTTGCGGTTCTTTCTTCTAGCGTGTGTTTGGCCCTCCCCTTTTTAACCTCTACTCTCTTATTTCTACTTGCATGTTTCTCGAACTATTAAACGATAATTTTTTTAAAAAGTTATGTATATAAAAAAACTATTTTTAAAAAATATTAATTTTTTCTTCTAATTTTGATAAGCTAATACTTAATTAATCATATGGTTACGAGTCCCTCCATTTTTGCATGTGCCCAAGACCTTCATTGCGAAACAAAGCCTTAATTAAGTATAGCTAGCTATGTCTACATACTTTCTCTATTTAAAATATAATAATTGCCTCAGATTTAAATTTATCGAGGAGGAATTACTTTGAACGTTTTCTGGTTTAGTATATATTTTTTTATATATATTGGATTTTTTTTTGAAGTAACACATACTCCTACGTACATTAATTAACTGTTTCCATTCGCATGCGTGATGGAGCAATCGACAGGCCACGCAGATGTCACGGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAAGATCTGCCGAGTTTTACGTATCTGCAAACGATCATCGTCGGCCGCAACATCGGCCAAGCCGTGATGTGTCAACGACGGCAAATGCATGCACGCGGGAATAAATAATGGAGGCACCGATTAGGATCAACAATATGGTTAGTCCATTAAATATGTGTGTAAGCTCGATCGATATGGAATAATGAGAAACAAATAAACAATGAGAAACAAATATTCACCATGTTTATTACTACCTCTGTTTTCAAATAAATAGTATTGATTAGTGTAATTTTGAACTAACCGGCATCAAACAAAAAGAAACAGAGAGATACTTGTTTACGTTACTTCTTTTGTATACGTATCCAGCCGCGATGTTCGGAAACTGTGTAGGATCGAGATTGGCATCGATCAGTAAGGGCATCAACAATGTTACTTTTTAGCTGCCGGTAAGAAGCATTAAATGCTCTTTTCCTATCCGGTAGCAAGCTCTGTGAGAGTGGCGAAGAATTAAAATCTGGTGATAATATCTATTACCGGTATATTACTACCGGTGAAGAAGAGATAAAT]
consensusID : consensus_10586#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 530 fasta sequence
[GGGTGCAACTGCATCAAAACCATTCAGCATATCTCTTGCTATCTT-GCAATTGCAAATTAGTTATACTCGTAGCTACT-GCGCGCGCACTAATTGACTACACAAGCAAATATGGGTTCTCCTTCTGCCAAGTACTTGCTGTTTAGCCTTGCAATCCTGCTGGTCCTGAGTAGCCAGCAGCAAGCTCT-GCTGCCTTCGGCATTCGCCCGCCAGTTGGTTCCGATGCCCACGAACACTGCCGCCGGCCACGCAGATGTCACGGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAAGATCTGCCGAGTTTTACGTATCTGCAAACGATCATCGTCGGCCGCAACATCGGCCAAGCCGTGATGTGTCAACGACGGCAAATGCATGCACGCGGGAATAAATAATGGAGGCACCGATTAGGATCAACAATATGGTTAGTCCATTAAATATGTGTGTAAGCTCGATCGATATGGAATAATGAGAAACAAATAAACAATGAGAAACAAATATTCACCATGTTAAAAAAAACCTCT]
[+] EMBL AU162620 [GGGTGCAACTGCATCAAAACCATTCAGCATATCTCTTGCTATCTTGGCAATTGCAAATTAGTTATACTCGTAGCTACTGGCGCGCGCACTAATTGACTACACAAGCAAATATGGGTTCTCCTTCTGCCAAGTACTTGCTGTTTAGCCTTGCAATCCTGCTGGTCCTGAGTAGCCAGCAGCAAGCTCTGGCT CCTTCGGCATTCGCCCGCCAGTTGGTTCCGATGCCCACGAACACTGCCGCCGGCCACGCAGATGTCACGGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAAGATCTGCCGAGTTTTACGTATCTGCAAACGATCATCGTCGGCCGCAACATCGGCCAAGCCGTGATGTGTCAACGACGGCAAATGCATGCACGCGGGAATAAATAATGGAGGCACCGATTAGGATCAACAATATGGTTAGTCCATTAAATATGTGTGTAAGCTCGATCGATATGGAATAATGAGAAACAAATAAACAATGAGAAACAAAaa ]
[+] EMBL AU071077 [ AAACATTCAGCATATCTCTTGCTATCTT GCAATTGCAAATTAGTTATACTCGTAGCTACT GCGCGCGCACTAATTGACTACACAAGCAAATATGGGTTCTCCTTCTGCCAAGTACTTGCTGTTTAGCCTTGCAATCCTGCTGGTCCTGAGTAGCCAGCAGCAAGCTCT GCTGCCTTCGGCATTCGCCCGCCAGTTGGTTCCGATGCCCACGAACACTGCCGCCGGCCACGCAGATGTCACGGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAAGATCTGCCGAGTTTTACGTATC ]
[+] EMBL CF330229 [ TTCAGCATATCTCTTGCTATCTT GCAATTGCAAATTAGTTATACTCGTAGCTACT GCGCGCGCACTAATTGACTACACAAGCAAATATGGGTTCTCCTTCTGCCAAGTACTTGCTGTTTAGCCTTGCAATCCTGCTGGTCCTGAGTAGCCAGCAGCAAGCTCT GCTGCCTTCGGCATTCGCCCGCCAGTTGGTTCCGATGCCCACGAACACTGCCGCCGGCCACGCAGATGTCACGGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAAGATCTGCCGAGTTTTACGTATCCGCAAACGATCATCGTCGGCCGCAACATCGGCCAAGCCGTGATGTGTCAACGACGGCAAATGCATGCACGCGGGAATAAATAATGGAGGCACCGATTAGGATCAACAATATGGTTAGTCCATTAAATATGTGTGTAAGCTCGATCGATATGGAATAATGAGAAACAAATAAACAATGAGAAACAAATATTCACCATGTTAAAAAA ]
[-] EMBL CF330230 [ TCTCTTGCTATCTT GCAATTGCAAATTAGTTATACTCGTAGCTACT GCGCGCGCACTAATTGACTACACAAGCAAATATGGGTTCTCCTTCTGCCAAGTACTTGCTGTTTAGCCTTGCAATCCTGCTGGTCCTGAGTAGCCAGCAGCAAGCTCT GCTGCCTTCGGCATTCGCCCGCCAGTTGGTTCCGATGCCCACGAACACTGCCGCCGGCCACGCAGATGTCACGGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAAGATCTGCCGAGTTTTACGTATCCGCAAACGATCATCGTCGGCCGCAACATCGGCCAAGCCGTGATGTGTCAACGACGGCAAATGCATGCACGCGGGAATAAATAATGGAGGCACCGATTAGGATCAACAATATGGTTAGTCCATTAAATATGTGTGTAAGCTCGATCGATATGGAATAATGAGAAACAAATAAACAATGAGAAACAAATATTCACCATGTTAAAAAAA ]
[+] EMBL CA756182 [ AATTGCAAATTAGTTATACTCGTAGCTACT GCGCGCGCACTAATTGACTACACAAGCAAATATGGGTTCTCCTTCTGCCAAGTACTTGCTGTTTAGCCTTGCAATCCTGCTGGTCCTGAGTAGCCAGCAGCAAGCTCT GCTGCCTTCGGCATTCGCCCGCCAGTTGGTTCCGATGCCCACGAACACTGCCGCCGGCCACGCAGATGTCACGGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAAGATCTGCCGAGTTTTACGTATCTGCAAACGATCATCGTCGGCCGCAACATCGGCCAAGCCGTGATGTGTCAACGACGGCAAATGCATGCACGCGGGAATAAATAATGGAGGCACCGATTAGGATCAACAATATGGTTAGTCCATTAAATATGTGTGTAAGCTCGATCGATATGGAATAATGAGAAACAAATAAACAATGAGAAACAAATATTCACCATGTTTATTACTACCTCT]
consensusID : consensus_10586#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence
[AAATTAGTTATACTCGTAGCTACTGCGCGCGCACTAATTGACTACACAAGCAAATATGGGTTCTCCTTCTGCCAAGTACTTGCTGTTTAGCCTTGCAATCCTGCTGGTCCTGAGTAGCCAGCAGCAAGCTCTGCTGCCTTCGGCATTCGCCCGCCAGTTGGTTCCGATGCCCACGAACACTGCCGCCGGCCACGCAGATGTCACGGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAAGATCTGCCGAGTTTTACGTATCTGCAAACGATCATCGTCGGCCGCAACATCGGCCAAGCCGTGATGTGTCAACGACGGCAAATGCATGCACGCGGGAATAAATAATGGAGGCACCGATTAGGATCAACAATATGGTTAGTCCATTAAATATGTGTGTAAGCTCGATCGATATGGAATAATGAGAAACAAATAAACAATGAGAAACAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU071231 [AAATTAGTTATACTCGTAGCTACTGCGCGCGCACTAATTGACTACACAAGCAAATATGGGTTCTCCTTCTGCCAAGTACTTGCTGTTTAGCCTTGCAATCCTGCTGGTCCTGAGTAGCCAGCAGCAAGCTCTGCTGCCTTCGGCATTCGCCCGCCAGTTGGTTCCGATGCCCACGAACACTGCCGCCGGCCACGCAGATGTCACGGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAAGATCTGCCGAGTTTTACGTATCTGCAAACGATCATCGTCGGCCGCAACATCGGCCAAGCCGTGATGTGTCAACGACGGCAAATGCATGCACGCGGGAATAAATAATGGAGGCACCGATTAGGATCAACAATATGGTTAGTCCATTAAATATGTGTGTAAGCTCGATCGATATGGAATAATGAGAAACAAATAAACAATGAGAAACAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10586#1 ------------------------------------------------------------
consensus_10586#2 ------------------------------------------------------------
consensus_10586#0 CAGCATATCTCTTGCTATCTTGCAATTGCAAATTAGTTATACTCGTAGCTACTGCGCGCG 60
consensus_10586#1 ------------------------------------------------------------
consensus_10586#2 ------------------------------------------------------------
consensus_10586#0 CACTAATTGACTACACAAGCAAATATGGGTTCTCCTTCTGCCAAGTACTTGCTGTTTAGC 120
consensus_10586#1 ------------------------------------------------------------
consensus_10586#2 ------------------------------------------------------------
consensus_10586#0 CTTGCAATCCTGCTGGTCCTGAGTAGCCAGCAGCAAGCTCTGCTGCCTTCGGCATTCGCC 180
consensus_10586#1 ------------------------------------------------------------
consensus_10586#2 ------------------------------------------------------------
consensus_10586#0 CGCCAGTTGGTTCCGATGCCCACGAACACTGCCGCCGGTAAGAATAACATCAGTGTTAAT 240
consensus_10586#1 ------------------------------------------------------------
consensus_10586#2 ------------------------------------------------------------
consensus_10586#0 TACCAGTTCCATCTGTATATGTTTTGTGAAATATCATGTGGAGAAACTAACCACTACATC 300
consensus_10586#1 ------------------------------------------------------------
consensus_10586#2 ------------------------------------------------------------
consensus_10586#0 TCTTTGAACATTTGGAGTTGCGGTTCTTTCTTCTAGCGTGTGTTTGGCCCTCCCCTTTTT 360
consensus_10586#1 ------------------------------------------------------------
consensus_10586#2 ------------------------------------------------------------
consensus_10586#0 AACCTCTACTCTCTTATTTCTACTTGCATGTTTCTCGAACTATTAAACGATAATTTTTTT 420
consensus_10586#1 ------------------------------------------------------------
consensus_10586#2 ------------------------------------------------------------
consensus_10586#0 AAAAAGTTATGTATATAAAAAAACTATTTTTAAAAAATATTAATTTTTTCTTCTAATTTT 480
consensus_10586#1 ------------------------------------------------------------
consensus_10586#2 ------------------------------------------------------------
consensus_10586#0 GATAAGCTAATACTTAATTAATCATATGGTTACGAGTCCCTCCATTTTTGCATGTGCCCA 540
consensus_10586#1 -GGGTGCAACTGCATCAAAACCATTCAGCATATCTCTTGCTATCTTGCAATTGCAAATTA 59
consensus_10586#2 ------------------------------------------------------AAATTA 6
consensus_10586#0 AGACCTTCATTGCGAAACAAAGCCTTAAT-TAAGTATAGCTAGCT-ATGTCTACATACTT 598
* * *
consensus_10586#1 GTTATACTCGTAGC-TACTGCGCGCGCACTAATTGACTACA-CAAGCAAATATGGGTTCT 117
consensus_10586#2 GTTATACTCGTAGC-TACTGCGCGCGCACTAATTGACTACA-CAAGCAAATATGGGTTCT 64
consensus_10586#0 TCTCTATTTAAAATATAATAATTGCCTCAGATTTAAATTTATCGAGGAGGAATTACTTTG 658
* ** * * ** * ** * ** * * * * ** * ** **
consensus_10586#1 CCTTCTGCCAAGTACTTGCTGTTTAGCCTTGCAATCCTGCTGGTCCTGAGTAGCCAGCAG 177
consensus_10586#2 CCTTCTGCCAAGTACTTGCTGTTTAGCCTTGCAATCCTGCTGGTCCTGAGTAGCCAGCAG 124
consensus_10586#0 AACGTTTTCTGGT--TTAGTATATATTTTTTTATATATATTGGATTTTTTTTTGAAGTAA 716
* * ** ** * * ** ** * * *** * * ** *
consensus_10586#1 CAAGCTCTGCTGCCTTCGGCATTCGCCCGCCAGTTGGTTCCGATGCCCACGAACACTGCC 237
consensus_10586#2 CAAGCTCTGCTGCCTTCGGCATTCGCCCGCCAGTTGGTTCCGATGCCCACGAACACTGCC 184
consensus_10586#0 CACATACTCCTACGTACATTAATTAACTGTT--TCCATTCGCATGCGTGATGGAGCAATC 774
** ** ** * * * * * * * * *** **** * *
consensus_10586#1 GCC-GGCCACGCAGATGTCACGGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAA 296
consensus_10586#2 GCC-GGCCACGCAGATGTCACGGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAA 243
consensus_10586#0 GACAGGCCACGCAGATGTCACGGAGGAAAAGCCTAGCGTCCCGCCGTCGAGCGTAACAAA 834
* * ********************************************************
consensus_10586#1 GATCTGCCGAGTTTTACGTATCTGCAAACGATCATCGTCGGCCGCAACATCGGCCAAGCC 356
consensus_10586#2 GATCTGCCGAGTTTTACGTATCTGCAAACGATCATCGTCGGCCGCAACATCGGCCAAGCC 303
consensus_10586#0 GATCTGCCGAGTTTTACGTATCTGCAAACGATCATCGTCGGCCGCAACATCGGCCAAGCC 894
************************************************************
consensus_10586#1 GTGATGTGTCAACGACGGCAAATGCATGCACGCGGGAATAAATAATGGAGGCACCGATTA 416
consensus_10586#2 GTGATGTGTCAACGACGGCAAATGCATGCACGCGGGAATAAATAATGGAGGCACCGATTA 363
consensus_10586#0 GTGATGTGTCAACGACGGCAAATGCATGCACGCGGGAATAAATAATGGAGGCACCGATTA 954
************************************************************
consensus_10586#1 GGATCAACAATATGGTTAGTCCATTAAATATGTGTGTAAGCTCGATCGATATGGAATAAT 476
consensus_10586#2 GGATCAACAATATGGTTAGTCCATTAAATATGTGTGTAAGCTCGATCGATATGGAATAAT 423
consensus_10586#0 GGATCAACAATATGGTTAGTCCATTAAATATGTGTGTAAGCTCGATCGATATGGAATAAT 1014
************************************************************
consensus_10586#1 GAGAAACAAATAAACAATGAGAAACAAATATTCACCATGTTAAAAAAAACCTCT------ 530
consensus_10586#2 GAGAAACAAATAAACAATGAGAAACAAAAA---AAAAAAAAAAAAAAAA----------- 469
consensus_10586#0 GAGAAACAAATAAACAATGAGAAACAAATATTCACCATGTTTATTACTACCTCTGTTTTC 1074
**************************** * * * * * *
consensus_10586#1 ------------------------------------------------------------
consensus_10586#2 ------------------------------------------------------------
consensus_10586#0 AAATAAATAGTATTGATTAGTGTAATTTTGAACTAACCGGCATCAAACAAAAAGAAACAG 1134
consensus_10586#1 ------------------------------------------------------------
consensus_10586#2 ------------------------------------------------------------
consensus_10586#0 AGAGATACTTGTTTACGTTACTTCTTTTGTATACGTATCCAGCCGCGATGTTCGGAAACT 1194
consensus_10586#1 ------------------------------------------------------------
consensus_10586#2 ------------------------------------------------------------
consensus_10586#0 GTGTAGGATCGAGATTGGCATCGATCAGTAAGGGCATCAACAATGTTACTTTTTAGCTGC 1254
consensus_10586#1 ------------------------------------------------------------
consensus_10586#2 ------------------------------------------------------------
consensus_10586#0 CGGTAAGAAGCATTAAATGCTCTTTTCCTATCCGGTAGCAAGCTCTGTGAGAGTGGCGAA 1314
consensus_10586#1 ------------------------------------------------------------
consensus_10586#2 ------------------------------------------------------------
consensus_10586#0 GAATTAAAATCTGGTGATAATATCTATTACCGGTATATTACTACCGGTGAAGAAGAGATA 1374
consensus_10586#1 ---
consensus_10586#2 ---
consensus_10586#0 AAT 1377
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||