These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10588#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1004 fasta sequence [CGCCATCATCGATCGATCGATCACAACTACTAGAAATCCAGCCAAGAAGATCGAGACCGGATACAGCTAGCAATCCATCCAAGAAGATCGAGAGAGCGGATACAGCTAGCCTAGCTACGCGAAGGATCAGATCATCGGCATGGAGCTGGAGCTTGGGCTGGCGCCACCGAATTCCGGTCATCTCGTCGTCGACGAGCTCAGCAGCAGCAGCAGCAGCGGCGGCGGCAGCGGCAGCGCGCCGGT-GTCTGCCTCGTCGGCCGGGAAGAGGGGATTCAGGGAGGCGTTCCAGGAGACGCTGCTGCTCTTCGACGACGGCAGCTGCTGCAACACCAGCGACGACGATTGCAGGAGGAGGAAGAAGACGGTGGT-GGGGTGGCCACCGGTGAGCTCGGCGCGGCGGGCGTGCGGCGGCGCCAACTACGTGAAGGTGAAGAAGGAAGGCGACGCCATCGGGAGGAAGGTTGATTTGGCCCTCCATTCCTCCTACGACGAGCTCGCTGCCACGCTCGCCCGCATGTTCCCCACCAACGACCACCAAGGCGAGAAGAAAATGGCCAATGATGATCATGGCGATGCCGCTGGACCTGTGGTCACCTACGAGGATGGTGATGGGGATTGGATGCTGGTTGGGGACGTGCCATGGGATGATTTTGCACGATCTGTGAAACGCCTGAAGATACTGGGTTAACTGAACTGAAGGAGATGCATGCGTGAGTTGATGGAGCACAGCTCGGTTTTGGTTGCCTGGCATCTGCGTGTGGGTGTGCACTGATGTATGTACATGTTTTCGTTTTCAGTCAGGATGTTAGGACGAGAGAAAGAGCTTTCTGTCAAAGACTATATACTGCTAGCTTATATATACTGTAGTTGGGCACATCTCATGTGTGCCCAGGGCTAGGTTTTGAGAATGTTTACAGAGTTCTGTGTTTTTACACCTTCTATATGTTTTGCAAACTGATCTTGTACTATAATACTACTTTTATTTATTTCTCTAAAAAAAAAAA] [+] EMBL AK073365 [CGCCATCATCGATCGATCGATCACAACTACTAGAAATCCAGCCAAGAAGATCGAGACCGGATACAGCTAGCAATCCATCCAAGAAGATCGAGAGAGCGGATACAGCTAGCCTAGCTACGCGAAGGATCAGATCATCGGCATGGAGCTGGAGCTTGGGCTGGCGCCACCGAATTCCGGTCATCTCGTCGTCGACGAGCTCAGCAGCAGCAGCAGCAGCGGCGGCGGCAGCGGCAGCGCGCCGGT GTCTGCCTCGTCGGCCGGGAAGAGGGGATTCAGGGAGGCGTTCCAGGAGACGCTGCTGCTCTTCGACGACGGCAGCTGCTGCAACACCAGCGACGACGATTGCAGGAGGAGGAAGAAGACGGTGGT GGGGTGGCCACCGGTGAGCTCGGCGCGGCGGGCGTGCGGCGGCGCCAACTACGTGAAGGTGAAGAAGGAAGGCGACGCCATCGGGAGGAAGGTTGATTTGGCCCTCCATTCCTCCTACGACGAGCTCGCTGCCACGCTCGCCCGCATGTTCCCCACCAACGACCACCAAGGCGAGAAGAAAATGGCCAATGATGATCATGGCGATGCCGCTGGACCTGTGGTCACCTACGAGGATGGTGATGGGGATTGGATGCTGGTTGGGGACGTGCCATGGGATGATTTTGCACGATCTGTGAAACGCCTGAAGATACTGGGTTAACTGAACTGAAGGAGATGCATGCGTGAGTTGATGGAGCACAGCTCGGTTTTGGTTGCCTGGCATCTGCGTGTGGGTGTGCACTGATGTATGTACATGTTTTCGTTTTCAGTCAGGATGTTAGGACGAGAGAAAGAGCTTTCTGTCAAAGACTATATACTGCTAGCTTATATATACTGTAGTTGGGCACATCTCATGTGTGCCCAGGGCTAGGTTTTGAGAATGTTTACAGAGTTCTGTGTTTTTACACCTTCTATATGTTTTGCAAACTGATCTTGTACTATAATACTACTTTTATTTATTTCTCT ] [+] EMBL CF307309 [ GATCGATCGATCACAACTACTAGAAATCCAGCCAAGAAGATCGAGACCGGATACAGCTAGCAATCCATCCAAGAAGATCGAGAGAGCGGATACAGCTAGCCTAGCTACGCGAAGGATCAGATCATCGGCATGGAGCTGGAGCTTGGGCTGGCGCCACCGAATTCCGGTCATCTCGTCGTCGACGAGCTCAGCAGCAGCAGCAGCAGCGGCGGCGGCAGCGGCAGCGCGCCGGT GTCTGCCTCGTCGGCCGGGAAGAGGGGATTCAGGGAGGCGTTCCAGGAGACGCTGCTGCTCTTCGACGACGGCAGCTGCTGCAACACCAGCGACGACGATTGCAGGAGGAGGAAGAAGACGGTGGTGGGGGTGGCCACCGGTGAGCTCGGCGCGGCGGGCGTGCGGCGGCGCCAACTACGTGAAGGTGAAGAAGGAAGGCGACGCCATCGGGAGGAAGGTTGATTTGGCCCTCCATTCCTCCTACGACGAGCTCGCTGCCACGCTCGCCCGCATGTTCCCCACCAACGACCACCAAGGCGAGAAGAAAATGGCCAATGATGATCATGGCGATGCCGCTGGACCTGTGGTCACCTACGAGGAT ] [+] EMBL C27125 [ ATCGATCGATCACAACTACTAGAAATCCAGCCAAGAAGATCGAGACCGGATACAGCTAGCAATCCATCCAAGAAGATCGAGAGAGCGGATACAGCTAGCCTAGCTACGCGAAGGATCAGATCATCGGCATGGAGCTGGAGCTTGGGCTGGCGCCACCGAATTCCGGTCATCTCGTCGTCGA GATCTCAGCAGCAGCAGCAGCAGC GCGGCGNCA NGGCANCGCGCCGNTGGTCTGCCTCGTCGGCCGGGAAGAGGGGATTCAGGGAGGCGTTCCAGGAGACGCTGCTGCTCTTCGACGACGGCAGCTTCTNCAACACCAGCGACGACGATTGCAGGAGGAGGAAGAAGACGGTNGT AGGGTTGCCACCGGTGAGCTCGGCGCGGCG ] [-] EMBL CA759078 [ AGCGACGACGATTGCAGGAGGAGGAAGAAGACGGTGGT GGGGTGGCCACCGGTGAGCTCGGCTCGGCGGGCGTGCGGCGGCGCCAACTACGTGAAGGTGAAGAAGGAAGGCGACGCCATCGGGAGGAAGGTTGATTTGGCCCTCCATTCCTCCTACGACGAGCTCGATGCCACGCTCGCCCGCATGTTCCCCACCAACGACCACCAAGGCGAGAAGAAAATGGCCAATGATGATCATGGCGATGCCGCTGGACCTGTGGTCACCTACGAGGATGGTGATGGGGATTGGATGCTGGTTGGGGACGTGCCATGGGATGATTTTGCACGATCTGTGAAACGCCTGAAGATACTGGGTTAACTGAACTGAAGGAGATGCATGCGTGAGTTGATGGAGCACAGCTCGGTTTTGGTTGCCTGGCATCTGCGTGTGGGTGTGCACTGATGTATGTACATGTTTTCGTTTTCAGTCAGGATGTTAGGACGAGAGAAAGAGCTTTCTGTCAAAGACTATATACTGCTAGCTTATATATACTGTAGTTGGGCACATCTCATGTGTGCCCAGGGCTAGGTTTTGAGAATGTTTACAGAGTTCTGTGTTTTTACACCTTCTATATGTTTTGCAAACTGATCTTGTACTATAATACTACTTCTATTT TTT TCAAAAAAAAAAAA] consensusID : consensus_10588#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 482 fasta sequence [TGCCGCTGGACCTGTGGTCACCTACGAGGATGGTGATGGGGATTGGATGCTGGTTGGGGACGTGCCATGGGATGATTTTGCACGATCTGTGAAACGCCTGAAGATACTGGGTTAACTGAACTGAAGGAGATGCATGCGTGAGTTGATGGAGCACAGCTCGGTTTTGGTTGCCTGGCATCTGCGTGTGGGTGTGCACTGATGTATGTACATGTTTTCGTTTTCAGCCAGGATGTTAGGACGAGAGAAAAAAAATTCTGTCAAAGACTATATACTGCTAGCTTATATATACTGT-AAATGGGCACATCTCATGTGTGCCCAGGGCTAGGTTTTGAGAATGTTTACAGAGTTCTGTGTTTTTACACCTTCTATATGTTTTGCAAACTGATCTTGTACTATAATACTACTTTTATTTATTTCTCTCTGTTTTTTCAAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTACGTAGCGTATCGTTTCAG] [-] EMBL CF330410 [TGCCGCTGGACCTGTGGTCACCTACGAGGATGGTGATGGGGATTGGATGCTGGTTGGGGACGTGCCATGGGATGATTTTGCACGATCTGTGAAACGCCTGAAGATACTGGGTTAACTGAACTGAAGGAGATGCATGCGTGAGTTGATGGAGCACAGCTCGGTTTTGGTTGCCTGGCATCTGCGTGTGGGTGTGCACTGATGTATGTACATGTTTTCGTTTTCAGCCAGGATGTTAGGACGAGAGAAAAAAAATTCTGTCAAAGACTATATACTGCTAGCTTATATATACTGT AAATGGGCACATCTCATGTGTGCCCAGGGCTAGGTTTTGAGAATGTTTACAGAGTTCTGTGTTTTTACACCTTCTATATGTTTTGCAAACTGATCTTGTACTATAATACTACTTTTATTTATTTCTCTCTGTTTTTTCAAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTACGTAGCGTATCGTTTCAG] [+] EMBL CF330409 [TGCCGCTGGACCTGTGGTCACCTACGAGGATGGTGATGGGGATTGGATGCTGGTTGGGGACGTGCCATGGGATGATTTTGCACGATCTGTGAAACGCCTGAAGATACTGGGTTAACTGAACTGAAGGAGATGCATGCGTGAGTTGATGGAGCACAGCTCGGTTTTGGTTGCCTGGCATCTGCGTGTGGGTGTGCACTGATGTATGTACATGTTTTCGTTTTCAGCCAGGATGTTAGGACGAGAGAAAGAGCTTTCTGTCAAAGACTATATACTGCTAGCTTATATAT CTGTNAGTTGGGCACATCTCATGTGTGCCCAGGGCTAGGTTTTGAGAATGTTTACAGAGTTCTGTGTTTTTACACCTTCTATATGTTTTGCAAACTGATCTTGTACTATAATACTACTTTTATTTATTTCTCTCTTTTTTTTCAAAAA ] consensusID : consensus_10588#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [GATACTGGGTTAACTGAACTGAAGGAGATGCATGCGTGAGTTGATGGAGCACAGCTCGGTTTTGGTTGCCTGGCATCTGCGTGTGGGTGTGCACTGATGTATGTACATGTTTTCGTTTTCATTCAGGATGTTAGGACGAGAGAAAGAGCTTTCTGTCAAAGACTATATACTGCTAGCTTATATATACTGTAGTTGGGCACATCTCATGTGTGCCCAGGGCTAGGTTTTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF319941 [GATACTGGGTTAACTGAACTGAAGGAGATGCATGCGTGAGTTGATGGAGCACAGCTCGGTTTTGGTTGCCTGGCATCTGCGTGTGGGTGTGCACTGATGTATGTACATGTTTTCGTTTTCATTCAGGATGTTAGGACGAGAGAAAGAGCTTTCTGTCAAAGACTATATACTGCTAGCTTATATATACTGTAGTTGGGCACATCTCATGTGTGCCCAGGGCTAGGTTTTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10588#0 CGCCATCATCGATCGATCGATCACAACTACTAGAAATCCAGCCAAGAAGATCGAGACCGG 60 consensus_10588#1 ------------------------------------------------------------ consensus_10588#2 ------------------------------------------------------------ consensus_10588#0 ATACAGCTAGCAATCCATCCAAGAAGATCGAGAGAGCGGATACAGCTAGCCTAGCTACGC 120 consensus_10588#1 ------------------------------------------------------------ consensus_10588#2 ------------------------------------------------------------ consensus_10588#0 GAAGGATCAGATCATCGGCATGGAGCTGGAGCTTGGGCTGGCGCCACCGAATTCCGGTCA 180 consensus_10588#1 ------------------------------------------------------------ consensus_10588#2 ------------------------------------------------------------ consensus_10588#0 TCTCGTCGTCGACGAGCTCAGCAGCAGCAGCAGCAGCGGCGGCGGCAGCGGCAGCGCGCC 240 consensus_10588#1 ------------------------------------------------------------ consensus_10588#2 ------------------------------------------------------------ consensus_10588#0 GGTGTCTGCCTCGTCGGCCGGGAAGAGGGGATTCAGGGAGGCGTTCCAGGAGACGCTGCT 300 consensus_10588#1 ------------------------------------------------------------ consensus_10588#2 ------------------------------------------------------------ consensus_10588#0 GCTCTTCGACGACGGCAGCTGCTGCAACACCAGCGACGACGATTGCAGGAGGAGGAAGAA 360 consensus_10588#1 ------------------------------------------------------------ consensus_10588#2 ------------------------------------------------------------ consensus_10588#0 GACGGTGGTGGGGTGGCCACCGGTGAGCTCGGCGCGGCGGGCGTGCGGCGGCGCCAACTA 420 consensus_10588#1 ------------------------------------------------------------ consensus_10588#2 ------------------------------------------------------------ consensus_10588#0 CGTGAAGGTGAAGAAGGAAGGCGACGCCATCGGGAGGAAGGTTGATTTGGCCCTCCATTC 480 consensus_10588#1 ------------------------------------------------------------ consensus_10588#2 ------------------------------------------------------------ consensus_10588#0 CTCCTACGACGAGCTCGCTGCCACGCTCGCCCGCATGTTCCCCACCAACGACCACCAAGG 540 consensus_10588#1 ------------------------------------------------------------ consensus_10588#2 ------------------------------------------------------------ consensus_10588#0 CGAGAAGAAAATGGCCAATGATGATCATGGCGATGCCGCTGGACCTGTGGTCACCTACGA 600 consensus_10588#1 ---------------------------------TGCCGCTGGACCTGTGGTCACCTACGA 27 consensus_10588#2 ------------------------------------------------------------ consensus_10588#0 GGATGGTGATGGGGATTGGATGCTGGTTGGGGACGTGCCATGGGATGATTTTGCACGATC 660 consensus_10588#1 GGATGGTGATGGGGATTGGATGCTGGTTGGGGACGTGCCATGGGATGATTTTGCACGATC 87 consensus_10588#2 ------------------------------------------------------------ consensus_10588#0 TGTGAAACGCCTGAAGATACTGGGTTAACTGAACTGAAGGAGATGCATGCGTGAGTTGAT 720 consensus_10588#1 TGTGAAACGCCTGAAGATACTGGGTTAACTGAACTGAAGGAGATGCATGCGTGAGTTGAT 147 consensus_10588#2 ---------------GATACTGGGTTAACTGAACTGAAGGAGATGCATGCGTGAGTTGAT 45 ********************************************* consensus_10588#0 GGAGCACAGCTCGGTTTTGGTTGCCTGGCATCTGCGTGTGGGTGTGCACTGATGTATGTA 780 consensus_10588#1 GGAGCACAGCTCGGTTTTGGTTGCCTGGCATCTGCGTGTGGGTGTGCACTGATGTATGTA 207 consensus_10588#2 GGAGCACAGCTCGGTTTTGGTTGCCTGGCATCTGCGTGTGGGTGTGCACTGATGTATGTA 105 ************************************************************ consensus_10588#0 CATGTTTTCGTTTTCAGTCAGGATGTTAGGACGAGAGAAAGAGCTTTCTGTCAAAGACTA 840 consensus_10588#1 CATGTTTTCGTTTTCAGCCAGGATGTTAGGACGAGAGAAAAAAAATTCTGTCAAAGACTA 267 consensus_10588#2 CATGTTTTCGTTTTCATTCAGGATGTTAGGACGAGAGAAAGAGCTTTCTGTCAAAGACTA 165 **************** ********************** * *************** consensus_10588#0 TATACTGCTAGCTTATATATACTGTAGTTGGGCACATCTCATGTGTGCCCAGGGCTAGGT 900 consensus_10588#1 TATACTGCTAGCTTATATATACTGTAAATGGGCACATCTCATGTGTGCCCAGGGCTAGGT 327 consensus_10588#2 TATACTGCTAGCTTATATATACTGTAGTTGGGCACATCTCATGTGTGCCCAGGGCTAGGT 225 ************************** ******************************** consensus_10588#0 TTTGAGAATGTTTACAGAGTTCTGTGTTTTTACACCTTCTATATGTTTTGCAAACTGATC 960 consensus_10588#1 TTTGAGAATGTTTACAGAGTTCTGTGTTTTTACACCTTCTATATGTTTTGCAAACTGATC 387 consensus_10588#2 TTTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 285 ******** * * * * * * * *** * consensus_10588#0 TTGTACTATAATACTACTTTTATTTATTTCTCT----------AAAAAAAAAAA------ 1004 consensus_10588#1 TTGTACTATAATACTACTTTTATTTATTTCTCTCTGTTTTTTCAAAAAAAAAAAAAAAAA 447 consensus_10588#2 AAAAAAAAAAAAAAAA-------------------------------------------- 301 * * ** * * consensus_10588#0 ----------------------------------- consensus_10588#1 AAAATGTCATGCCGTTACGTAGCGTATCGTTTCAG 482 consensus_10588#2 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||