cluster # 10588

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Oryza sativa
cluster # 10588 cluster # 10588 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10588#0 length = 1004 sequences # 4

consensus_10588#1 length = 482 sequences # 2
consensus_10588#2 length = 301 sequences # 1

consensusID : consensus_10588#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1004
fasta sequence

                              [CGCCATCATCGATCGATCGATCACAACTACTAGAAATCCAGCCAAGAAGATCGAGACCGGATACAGCTAGCAATCCATCCAAGAAGATCGAGAGAGCGGATACAGCTAGCCTAGCTACGCGAAGGATCAGATCATCGGCATGGAGCTGGAGCTTGGGCTGGCGCCACCGAATTCCGGTCATCTCGTCGTCGACGAGCTCAGCAGCAGCAGCAGCAGCGGCGGCGGCAGCGGCAGCGCGCCGGT-GTCTGCCTCGTCGGCCGGGAAGAGGGGATTCAGGGAGGCGTTCCAGGAGACGCTGCTGCTCTTCGACGACGGCAGCTGCTGCAACACCAGCGACGACGATTGCAGGAGGAGGAAGAAGACGGTGGT-GGGGTGGCCACCGGTGAGCTCGGCGCGGCGGGCGTGCGGCGGCGCCAACTACGTGAAGGTGAAGAAGGAAGGCGACGCCATCGGGAGGAAGGTTGATTTGGCCCTCCATTCCTCCTACGACGAGCTCGCTGCCACGCTCGCCCGCATGTTCCCCACCAACGACCACCAAGGCGAGAAGAAAATGGCCAATGATGATCATGGCGATGCCGCTGGACCTGTGGTCACCTACGAGGATGGTGATGGGGATTGGATGCTGGTTGGGGACGTGCCATGGGATGATTTTGCACGATCTGTGAAACGCCTGAAGATACTGGGTTAACTGAACTGAAGGAGATGCATGCGTGAGTTGATGGAGCACAGCTCGGTTTTGGTTGCCTGGCATCTGCGTGTGGGTGTGCACTGATGTATGTACATGTTTTCGTTTTCAGTCAGGATGTTAGGACGAGAGAAAGAGCTTTCTGTCAAAGACTATATACTGCTAGCTTATATATACTGTAGTTGGGCACATCTCATGTGTGCCCAGGGCTAGGTTTTGAGAATGTTTACAGAGTTCTGTGTTTTTACACCTTCTATATGTTTTGCAAACTGATCTTGTACTATAATACTACTTTTATTTATTTCTCTAAAAAAAAAAA]

[+] EMBL AK073365             [CGCCATCATCGATCGATCGATCACAACTACTAGAAATCCAGCCAAGAAGATCGAGACCGGATACAGCTAGCAATCCATCCAAGAAGATCGAGAGAGCGGATACAGCTAGCCTAGCTACGCGAAGGATCAGATCATCGGCATGGAGCTGGAGCTTGGGCTGGCGCCACCGAATTCCGGTCATCTCGTCGTCGACGAGCTCAGCAGCAGCAGCAGCAGCGGCGGCGGCAGCGGCAGCGCGCCGGT GTCTGCCTCGTCGGCCGGGAAGAGGGGATTCAGGGAGGCGTTCCAGGAGACGCTGCTGCTCTTCGACGACGGCAGCTGCTGCAACACCAGCGACGACGATTGCAGGAGGAGGAAGAAGACGGTGGT GGGGTGGCCACCGGTGAGCTCGGCGCGGCGGGCGTGCGGCGGCGCCAACTACGTGAAGGTGAAGAAGGAAGGCGACGCCATCGGGAGGAAGGTTGATTTGGCCCTCCATTCCTCCTACGACGAGCTCGCTGCCACGCTCGCCCGCATGTTCCCCACCAACGACCACCAAGGCGAGAAGAAAATGGCCAATGATGATCATGGCGATGCCGCTGGACCTGTGGTCACCTACGAGGATGGTGATGGGGATTGGATGCTGGTTGGGGACGTGCCATGGGATGATTTTGCACGATCTGTGAAACGCCTGAAGATACTGGGTTAACTGAACTGAAGGAGATGCATGCGTGAGTTGATGGAGCACAGCTCGGTTTTGGTTGCCTGGCATCTGCGTGTGGGTGTGCACTGATGTATGTACATGTTTTCGTTTTCAGTCAGGATGTTAGGACGAGAGAAAGAGCTTTCTGTCAAAGACTATATACTGCTAGCTTATATATACTGTAGTTGGGCACATCTCATGTGTGCCCAGGGCTAGGTTTTGAGAATGTTTACAGAGTTCTGTGTTTTTACACCTTCTATATGTTTTGCAAACTGATCTTGTACTATAATACTACTTTTATTTATTTCTCT           ]
[+] EMBL CF307309             [          GATCGATCGATCACAACTACTAGAAATCCAGCCAAGAAGATCGAGACCGGATACAGCTAGCAATCCATCCAAGAAGATCGAGAGAGCGGATACAGCTAGCCTAGCTACGCGAAGGATCAGATCATCGGCATGGAGCTGGAGCTTGGGCTGGCGCCACCGAATTCCGGTCATCTCGTCGTCGACGAGCTCAGCAGCAGCAGCAGCAGCGGCGGCGGCAGCGGCAGCGCGCCGGT GTCTGCCTCGTCGGCCGGGAAGAGGGGATTCAGGGAGGCGTTCCAGGAGACGCTGCTGCTCTTCGACGACGGCAGCTGCTGCAACACCAGCGACGACGATTGCAGGAGGAGGAAGAAGACGGTGGTGGGGGTGGCCACCGGTGAGCTCGGCGCGGCGGGCGTGCGGCGGCGCCAACTACGTGAAGGTGAAGAAGGAAGGCGACGCCATCGGGAGGAAGGTTGATTTGGCCCTCCATTCCTCCTACGACGAGCTCGCTGCCACGCTCGCCCGCATGTTCCCCACCAACGACCACCAAGGCGAGAAGAAAATGGCCAATGATGATCATGGCGATGCCGCTGGACCTGTGGTCACCTACGAGGAT                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL C27125               [           ATCGATCGATCACAACTACTAGAAATCCAGCCAAGAAGATCGAGACCGGATACAGCTAGCAATCCATCCAAGAAGATCGAGAGAGCGGATACAGCTAGCCTAGCTACGCGAAGGATCAGATCATCGGCATGGAGCTGGAGCTTGGGCTGGCGCCACCGAATTCCGGTCATCTCGTCGTCGA GATCTCAGCAGCAGCAGCAGCAGC GCGGCGNCA NGGCANCGCGCCGNTGGTCTGCCTCGTCGGCCGGGAAGAGGGGATTCAGGGAGGCGTTCCAGGAGACGCTGCTGCTCTTCGACGACGGCAGCTTCTNCAACACCAGCGACGACGATTGCAGGAGGAGGAAGAAGACGGTNGT AGGGTTGCCACCGGTGAGCTCGGCGCGGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CA759078             [                                                                                                                                                                                                                                                                                                                                            AGCGACGACGATTGCAGGAGGAGGAAGAAGACGGTGGT GGGGTGGCCACCGGTGAGCTCGGCTCGGCGGGCGTGCGGCGGCGCCAACTACGTGAAGGTGAAGAAGGAAGGCGACGCCATCGGGAGGAAGGTTGATTTGGCCCTCCATTCCTCCTACGACGAGCTCGATGCCACGCTCGCCCGCATGTTCCCCACCAACGACCACCAAGGCGAGAAGAAAATGGCCAATGATGATCATGGCGATGCCGCTGGACCTGTGGTCACCTACGAGGATGGTGATGGGGATTGGATGCTGGTTGGGGACGTGCCATGGGATGATTTTGCACGATCTGTGAAACGCCTGAAGATACTGGGTTAACTGAACTGAAGGAGATGCATGCGTGAGTTGATGGAGCACAGCTCGGTTTTGGTTGCCTGGCATCTGCGTGTGGGTGTGCACTGATGTATGTACATGTTTTCGTTTTCAGTCAGGATGTTAGGACGAGAGAAAGAGCTTTCTGTCAAAGACTATATACTGCTAGCTTATATATACTGTAGTTGGGCACATCTCATGTGTGCCCAGGGCTAGGTTTTGAGAATGTTTACAGAGTTCTGTGTTTTTACACCTTCTATATGTTTTGCAAACTGATCTTGTACTATAATACTACTTCTATTT TTT TCAAAAAAAAAAAA]




>consensus_10588#0
CGCCATCATCGATCGATCGATCACAACTACTAGAAATCCAGCCAAGAAGATCGAGACCGG
ATACAGCTAGCAATCCATCCAAGAAGATCGAGAGAGCGGATACAGCTAGCCTAGCTACGC
GAAGGATCAGATCATCGGCATGGAGCTGGAGCTTGGGCTGGCGCCACCGAATTCCGGTCA
TCTCGTCGTCGACGAGCTCAGCAGCAGCAGCAGCAGCGGCGGCGGCAGCGGCAGCGCGCC
GGTGTCTGCCTCGTCGGCCGGGAAGAGGGGATTCAGGGAGGCGTTCCAGGAGACGCTGCT
GCTCTTCGACGACGGCAGCTGCTGCAACACCAGCGACGACGATTGCAGGAGGAGGAAGAA
GACGGTGGTGGGGTGGCCACCGGTGAGCTCGGCGCGGCGGGCGTGCGGCGGCGCCAACTA
CGTGAAGGTGAAGAAGGAAGGCGACGCCATCGGGAGGAAGGTTGATTTGGCCCTCCATTC
CTCCTACGACGAGCTCGCTGCCACGCTCGCCCGCATGTTCCCCACCAACGACCACCAAGG
CGAGAAGAAAATGGCCAATGATGATCATGGCGATGCCGCTGGACCTGTGGTCACCTACGA
GGATGGTGATGGGGATTGGATGCTGGTTGGGGACGTGCCATGGGATGATTTTGCACGATC
TGTGAAACGCCTGAAGATACTGGGTTAACTGAACTGAAGGAGATGCATGCGTGAGTTGAT
GGAGCACAGCTCGGTTTTGGTTGCCTGGCATCTGCGTGTGGGTGTGCACTGATGTATGTA
CATGTTTTCGTTTTCAGTCAGGATGTTAGGACGAGAGAAAGAGCTTTCTGTCAAAGACTA
TATACTGCTAGCTTATATATACTGTAGTTGGGCACATCTCATGTGTGCCCAGGGCTAGGT
TTTGAGAATGTTTACAGAGTTCTGTGTTTTTACACCTTCTATATGTTTTGCAAACTGATC
TTGTACTATAATACTACTTTTATTTATTTCTCTAAAAAAAAAAA

consensusID : consensus_10588#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 482
fasta sequence

                              [TGCCGCTGGACCTGTGGTCACCTACGAGGATGGTGATGGGGATTGGATGCTGGTTGGGGACGTGCCATGGGATGATTTTGCACGATCTGTGAAACGCCTGAAGATACTGGGTTAACTGAACTGAAGGAGATGCATGCGTGAGTTGATGGAGCACAGCTCGGTTTTGGTTGCCTGGCATCTGCGTGTGGGTGTGCACTGATGTATGTACATGTTTTCGTTTTCAGCCAGGATGTTAGGACGAGAGAAAAAAAATTCTGTCAAAGACTATATACTGCTAGCTTATATATACTGT-AAATGGGCACATCTCATGTGTGCCCAGGGCTAGGTTTTGAGAATGTTTACAGAGTTCTGTGTTTTTACACCTTCTATATGTTTTGCAAACTGATCTTGTACTATAATACTACTTTTATTTATTTCTCTCTGTTTTTTCAAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTACGTAGCGTATCGTTTCAG]

[-] EMBL CF330410             [TGCCGCTGGACCTGTGGTCACCTACGAGGATGGTGATGGGGATTGGATGCTGGTTGGGGACGTGCCATGGGATGATTTTGCACGATCTGTGAAACGCCTGAAGATACTGGGTTAACTGAACTGAAGGAGATGCATGCGTGAGTTGATGGAGCACAGCTCGGTTTTGGTTGCCTGGCATCTGCGTGTGGGTGTGCACTGATGTATGTACATGTTTTCGTTTTCAGCCAGGATGTTAGGACGAGAGAAAAAAAATTCTGTCAAAGACTATATACTGCTAGCTTATATATACTGT AAATGGGCACATCTCATGTGTGCCCAGGGCTAGGTTTTGAGAATGTTTACAGAGTTCTGTGTTTTTACACCTTCTATATGTTTTGCAAACTGATCTTGTACTATAATACTACTTTTATTTATTTCTCTCTGTTTTTTCAAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTACGTAGCGTATCGTTTCAG]
[+] EMBL CF330409             [TGCCGCTGGACCTGTGGTCACCTACGAGGATGGTGATGGGGATTGGATGCTGGTTGGGGACGTGCCATGGGATGATTTTGCACGATCTGTGAAACGCCTGAAGATACTGGGTTAACTGAACTGAAGGAGATGCATGCGTGAGTTGATGGAGCACAGCTCGGTTTTGGTTGCCTGGCATCTGCGTGTGGGTGTGCACTGATGTATGTACATGTTTTCGTTTTCAGCCAGGATGTTAGGACGAGAGAAAGAGCTTTCTGTCAAAGACTATATACTGCTAGCTTATATAT CTGTNAGTTGGGCACATCTCATGTGTGCCCAGGGCTAGGTTTTGAGAATGTTTACAGAGTTCTGTGTTTTTACACCTTCTATATGTTTTGCAAACTGATCTTGTACTATAATACTACTTTTATTTATTTCTCTCTTTTTTTTCAAAAA                                               ]




>consensus_10588#1
TGCCGCTGGACCTGTGGTCACCTACGAGGATGGTGATGGGGATTGGATGCTGGTTGGGGA
CGTGCCATGGGATGATTTTGCACGATCTGTGAAACGCCTGAAGATACTGGGTTAACTGAA
CTGAAGGAGATGCATGCGTGAGTTGATGGAGCACAGCTCGGTTTTGGTTGCCTGGCATCT
GCGTGTGGGTGTGCACTGATGTATGTACATGTTTTCGTTTTCAGCCAGGATGTTAGGACG
AGAGAAAAAAAATTCTGTCAAAGACTATATACTGCTAGCTTATATATACTGTAAATGGGC
ACATCTCATGTGTGCCCAGGGCTAGGTTTTGAGAATGTTTACAGAGTTCTGTGTTTTTAC
ACCTTCTATATGTTTTGCAAACTGATCTTGTACTATAATACTACTTTTATTTATTTCTCT
CTGTTTTTTCAAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTACGTAGCGTATCGTTTC
AG

consensusID : consensus_10588#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 301
fasta sequence

                              [GATACTGGGTTAACTGAACTGAAGGAGATGCATGCGTGAGTTGATGGAGCACAGCTCGGTTTTGGTTGCCTGGCATCTGCGTGTGGGTGTGCACTGATGTATGTACATGTTTTCGTTTTCATTCAGGATGTTAGGACGAGAGAAAGAGCTTTCTGTCAAAGACTATATACTGCTAGCTTATATATACTGTAGTTGGGCACATCTCATGTGTGCCCAGGGCTAGGTTTTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF319941             [GATACTGGGTTAACTGAACTGAAGGAGATGCATGCGTGAGTTGATGGAGCACAGCTCGGTTTTGGTTGCCTGGCATCTGCGTGTGGGTGTGCACTGATGTATGTACATGTTTTCGTTTTCATTCAGGATGTTAGGACGAGAGAAAGAGCTTTCTGTCAAAGACTATATACTGCTAGCTTATATATACTGTAGTTGGGCACATCTCATGTGTGCCCAGGGCTAGGTTTTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_10588#2
GATACTGGGTTAACTGAACTGAAGGAGATGCATGCGTGAGTTGATGGAGCACAGCTCGGT
TTTGGTTGCCTGGCATCTGCGTGTGGGTGTGCACTGATGTATGTACATGTTTTCGTTTTC
ATTCAGGATGTTAGGACGAGAGAAAGAGCTTTCTGTCAAAGACTATATACTGCTAGCTTA
TATATACTGTAGTTGGGCACATCTCATGTGTGCCCAGGGCTAGGTTTTGAGAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10588#0      CGCCATCATCGATCGATCGATCACAACTACTAGAAATCCAGCCAAGAAGATCGAGACCGG 60
consensus_10588#1      ------------------------------------------------------------
consensus_10588#2      ------------------------------------------------------------
                                                                                   

consensus_10588#0      ATACAGCTAGCAATCCATCCAAGAAGATCGAGAGAGCGGATACAGCTAGCCTAGCTACGC 120
consensus_10588#1      ------------------------------------------------------------
consensus_10588#2      ------------------------------------------------------------
                                                                                   

consensus_10588#0      GAAGGATCAGATCATCGGCATGGAGCTGGAGCTTGGGCTGGCGCCACCGAATTCCGGTCA 180
consensus_10588#1      ------------------------------------------------------------
consensus_10588#2      ------------------------------------------------------------
                                                                                   

consensus_10588#0      TCTCGTCGTCGACGAGCTCAGCAGCAGCAGCAGCAGCGGCGGCGGCAGCGGCAGCGCGCC 240
consensus_10588#1      ------------------------------------------------------------
consensus_10588#2      ------------------------------------------------------------
                                                                                   

consensus_10588#0      GGTGTCTGCCTCGTCGGCCGGGAAGAGGGGATTCAGGGAGGCGTTCCAGGAGACGCTGCT 300
consensus_10588#1      ------------------------------------------------------------
consensus_10588#2      ------------------------------------------------------------
                                                                                   

consensus_10588#0      GCTCTTCGACGACGGCAGCTGCTGCAACACCAGCGACGACGATTGCAGGAGGAGGAAGAA 360
consensus_10588#1      ------------------------------------------------------------
consensus_10588#2      ------------------------------------------------------------
                                                                                   

consensus_10588#0      GACGGTGGTGGGGTGGCCACCGGTGAGCTCGGCGCGGCGGGCGTGCGGCGGCGCCAACTA 420
consensus_10588#1      ------------------------------------------------------------
consensus_10588#2      ------------------------------------------------------------
                                                                                   

consensus_10588#0      CGTGAAGGTGAAGAAGGAAGGCGACGCCATCGGGAGGAAGGTTGATTTGGCCCTCCATTC 480
consensus_10588#1      ------------------------------------------------------------
consensus_10588#2      ------------------------------------------------------------
                                                                                   

consensus_10588#0      CTCCTACGACGAGCTCGCTGCCACGCTCGCCCGCATGTTCCCCACCAACGACCACCAAGG 540
consensus_10588#1      ------------------------------------------------------------
consensus_10588#2      ------------------------------------------------------------
                                                                                   

consensus_10588#0      CGAGAAGAAAATGGCCAATGATGATCATGGCGATGCCGCTGGACCTGTGGTCACCTACGA 600
consensus_10588#1      ---------------------------------TGCCGCTGGACCTGTGGTCACCTACGA 27
consensus_10588#2      ------------------------------------------------------------
                                                                                   

consensus_10588#0      GGATGGTGATGGGGATTGGATGCTGGTTGGGGACGTGCCATGGGATGATTTTGCACGATC 660
consensus_10588#1      GGATGGTGATGGGGATTGGATGCTGGTTGGGGACGTGCCATGGGATGATTTTGCACGATC 87
consensus_10588#2      ------------------------------------------------------------
                                                                                   

consensus_10588#0      TGTGAAACGCCTGAAGATACTGGGTTAACTGAACTGAAGGAGATGCATGCGTGAGTTGAT 720
consensus_10588#1      TGTGAAACGCCTGAAGATACTGGGTTAACTGAACTGAAGGAGATGCATGCGTGAGTTGAT 147
consensus_10588#2      ---------------GATACTGGGTTAACTGAACTGAAGGAGATGCATGCGTGAGTTGAT 45
                                      *********************************************

consensus_10588#0      GGAGCACAGCTCGGTTTTGGTTGCCTGGCATCTGCGTGTGGGTGTGCACTGATGTATGTA 780
consensus_10588#1      GGAGCACAGCTCGGTTTTGGTTGCCTGGCATCTGCGTGTGGGTGTGCACTGATGTATGTA 207
consensus_10588#2      GGAGCACAGCTCGGTTTTGGTTGCCTGGCATCTGCGTGTGGGTGTGCACTGATGTATGTA 105
                       ************************************************************

consensus_10588#0      CATGTTTTCGTTTTCAGTCAGGATGTTAGGACGAGAGAAAGAGCTTTCTGTCAAAGACTA 840
consensus_10588#1      CATGTTTTCGTTTTCAGCCAGGATGTTAGGACGAGAGAAAAAAAATTCTGTCAAAGACTA 267
consensus_10588#2      CATGTTTTCGTTTTCATTCAGGATGTTAGGACGAGAGAAAGAGCTTTCTGTCAAAGACTA 165
                       ****************  ********************** *   ***************

consensus_10588#0      TATACTGCTAGCTTATATATACTGTAGTTGGGCACATCTCATGTGTGCCCAGGGCTAGGT 900
consensus_10588#1      TATACTGCTAGCTTATATATACTGTAAATGGGCACATCTCATGTGTGCCCAGGGCTAGGT 327
consensus_10588#2      TATACTGCTAGCTTATATATACTGTAGTTGGGCACATCTCATGTGTGCCCAGGGCTAGGT 225
                       **************************  ********************************

consensus_10588#0      TTTGAGAATGTTTACAGAGTTCTGTGTTTTTACACCTTCTATATGTTTTGCAAACTGATC 960
consensus_10588#1      TTTGAGAATGTTTACAGAGTTCTGTGTTTTTACACCTTCTATATGTTTTGCAAACTGATC 387
consensus_10588#2      TTTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 285
                       ********     * * *             * *      * *        ***   *  

consensus_10588#0      TTGTACTATAATACTACTTTTATTTATTTCTCT----------AAAAAAAAAAA------ 1004
consensus_10588#1      TTGTACTATAATACTACTTTTATTTATTTCTCTCTGTTTTTTCAAAAAAAAAAAAAAAAA 447
consensus_10588#2      AAAAAAAAAAAAAAAA-------------------------------------------- 301
                           *  * ** *  *                                            

consensus_10588#0      -----------------------------------
consensus_10588#1      AAAATGTCATGCCGTTACGTAGCGTATCGTTTCAG 482
consensus_10588#2      -----------------------------------