cluster # 1059

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Oryza sativa
cluster # 1059 cluster # 1059 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1059#0 length = 366 sequences # 1

consensus_1059#1 length = 202 sequences # 1

consensusID : consensus_1059#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence

                              [ATGAGGGGGTGGGCGGCGAGGTGGCTGTCCCGATGGACGCGGAGGCCGCCGCGCANTGGACCCGCACGGCGGGATGCTCGCCGCCTCCGGGCNTGTCCAGCCCATGGCGTCCAACCAACTCACCCTCTCGTTCCAGGGCGAGGTCTACGTCTTCGACTCTGTCTCCCCTGACAAGGTTCAAGCAGTGCTCTTGCTACTCGGTGGAAGGGAGCTGAACCCAGGTTTGGGCTCTGGAGCATCGTCATCTGCGCCATACAGTAAGANGTTGAATTTTCCACACCGGGTGGCATCTTTGATGCGGTTCAGAGAAAAGCGGAAGGAGCGCAACTTTNATAAGAAGATCCGGTATTCTGTTCGGAAGGAAGT]

[+] EMBL C74289               [ATGAGGGGGTGGGCGGCGAGGTGGCTGTCCCGATGGACGCGGAGGCCGCCGCGCANTGGACCCGCACGGCGGGATGCTCGCCGCCTCCGGGCNTGTCCAGCCCATGGCGTCCAACCAACTCACCCTCTCGTTCCAGGGCGAGGTCTACGTCTTCGACTCTGTCTCCCCTGACAAGGTTCAAGCAGTGCTCTTGCTACTCGGTGGAAGGGAGCTGAACCCAGGTTTGGGCTCTGGAGCATCGTCATCTGCGCCATACAGTAAGANGTTGAATTTTCCACACCGGGTGGCATCTTTGATGCGGTTCAGAGAAAAGCGGAAGGAGCGCAACTTTNATAAGAAGATCCGGTATTCTGTTCGGAAGGAAGT]




>consensus_1059#0
ATGAGGGGGTGGGCGGCGAGGTGGCTGTCCCGATGGACGCGGAGGCCGCCGCGCANTGGA
CCCGCACGGCGGGATGCTCGCCGCCTCCGGGCNTGTCCAGCCCATGGCGTCCAACCAACT
CACCCTCTCGTTCCAGGGCGAGGTCTACGTCTTCGACTCTGTCTCCCCTGACAAGGTTCA
AGCAGTGCTCTTGCTACTCGGTGGAAGGGAGCTGAACCCAGGTTTGGGCTCTGGAGCATC
GTCATCTGCGCCATACAGTAAGANGTTGAATTTTCCACACCGGGTGGCATCTTTGATGCG
GTTCAGAGAAAAGCGGAAGGAGCGCAACTTTNATAAGAAGATCCGGTATTCTGTTCGGAA
GGAAGT

consensusID : consensus_1059#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 202
fasta sequence

                              [GACGCGCAACATCATGAGGGGGTGGGCGGCGAGGTGGCTGTCCCGATGGACGCGGAGGCCGCCGCGCAGCTGGACCCGCACGGCGGGATGCTCGCCGCCTCCGGCGCTGTCCAGCCCATGGCGTCCAACCAACTCACCCTCTCGTTCCAGGGCGAGGTCTACGTCTTNGACTCTGTCTCCCCTGANNNNNNNCAAGCNNTGC]

[+] EMBL CF197019             [GACGCGCAACATCATGAGGGGGTGGGCGGCGAGGTGGCTGTCCCGATGGACGCGGAGGCCGCCGCGCAGCTGGACCCGCACGGCGGGATGCTCGCCGCCTCCGGCGCTGTCCAGCCCATGGCGTCCAACCAACTCACCCTCTCGTTCCAGGGCGAGGTCTACGTCTTNGACTCTGTCTCCCCTGANNNNNNNCAAGCNNTGC]




>consensus_1059#1
GACGCGCAACATCATGAGGGGGTGGGCGGCGAGGTGGCTGTCCCGATGGACGCGGAGGCC
GCCGCGCAGCTGGACCCGCACGGCGGGATGCTCGCCGCCTCCGGCGCTGTCCAGCCCATG
GCGTCCAACCAACTCACCCTCTCGTTCCAGGGCGAGGTCTACGTCTTNGACTCTGTCTCC
CCTGANNNNNNNCAAGCNNTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1059#0      -------------ATGAGGGGGTGGGCGGCGAGGTGGCTGTCCCGATGGACGCGGAGGCC 47
consensus_1059#1      GACGCGCAACATCATGAGGGGGTGGGCGGCGAGGTGGCTGTCCCGATGGACGCGGAGGCC 60
                                   ***********************************************

consensus_1059#0      GCCGCGCAN-TGGACCCGCACGGCGGGATGCTCGCCGCCTCCGGGCNTGTCCAGCCCATG 106
consensus_1059#1      GCCGCGCAGCTGGACCCGCACGGCGGGATGCTCGCCGCCTCCGGCGCTGTCCAGCCCATG 120
                      ********  **********************************   *************

consensus_1059#0      GCGTCCAACCAACTCACCCTCTCGTTCCAGGGCGAGGTCTACGTCTTCGACTCTGTCTCC 166
consensus_1059#1      GCGTCCAACCAACTCACCCTCTCGTTCCAGGGCGAGGTCTACGTCTTNGACTCTGTCTCC 180
                      *********************************************** ************

consensus_1059#0      CCTGACAAGGTTCAAGCAGTGCTCTTGCTACTCGGTGGAAGGGAGCTGAACCCAGGTTTG 226
consensus_1059#1      CCTGANNNNNNNCAAGCNNTGC-------------------------------------- 202
                      *****       *****  ***                                      

consensus_1059#0      GGCTCTGGAGCATCGTCATCTGCGCCATACAGTAAGANGTTGAATTTTCCACACCGGGTG 286
consensus_1059#1      ------------------------------------------------------------
                                                                                  

consensus_1059#0      GCATCTTTGATGCGGTTCAGAGAAAAGCGGAAGGAGCGCAACTTTNATAAGAAGATCCGG 346
consensus_1059#1      ------------------------------------------------------------
                                                                                  

consensus_1059#0      TATTCTGTTCGGAAGGAAGT 366
consensus_1059#1      --------------------