These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10592#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1178 fasta sequence [CTCTTCCTCCCGCCCCCGACCTCTCTTCCCTATCCACCCCATCCATGGCTGCCTCCTCCCACTACGCCCTCCTCCACCACCACCTCCCCAACCCTCTCCATCCCCGTCACCTCTCCTCCTCCTCCTCCCCTTCTCCTCCCCCTCCTCTCCACCTCCACCTCCACCTCCACCGCCACCGCCTCGCCCTCTCCACCGCCCGTTTCTTCCGCCTCGCGGAGCGGCGAGCCAGCGCGGGGCCACTGGTGTTCGAAACGGAGGAGGAGAGGAGTGGGTGGTCGGGTGCGGAGGCAGCGGAGTCGAACTACGACGATGAGGAGGATGAGGAGGAGGAGCAAGGGTGGGCGGGCGGCAATGCCGCGGGGTGGCGCGGGGAGAGCCACGAGGATGATCAGGAGGAGGGTTCCGGTTCCGGGGAGGGGCGGAGGCCGCGGCGGTCGCGGCCGCGCGAGCTGTTCGTATGCAATCTTCCCCGCCGCTGCGACGTCGACGACCTCTACGAGCTCTTCAAGCCCTACGGCACCGTCCTCTCCGTTGAGATTTCCCGTGACCCTGAGACTGGACTTAGCCGAGGATGTGGTTTCGTCACAATGCGTTCTCTCCCAGAAGCTCGGACAGCCATGAACGCTCTCGATGGATTTGACCTGGATGGGCGTGAAATGCTTGTAAAACTATCATCCGACGTTGTTTCTAAAAGGAGAAACATCAACATGACTCATACGCCACCTGTGAAAGACCACATCTTCGAGAGCCCACACAAGATCTACGTTGGCAACATCGCGTGGTCTGTTGAGCCACAAGAATTGCGAGAGTACTTCTCTCAGTGCGGAACCGTCGTCAGTACAAGGCTGCTGACAGATCGCAAAGGAGGGAGAGGCCGTGTCTATGGATTCCTCTCATTTGCTTCAGCTGAAGAGCTTGAGGCTGCATTGAAGCTTGACAATACGCATTTTCATGGACGGAACATCCTCGTCAGGCAAGCTCATGAAGAGCGTCAGGCACACTGAACCG-TCCAGGGATTATTGGAGACCTA-TTGCAATTTTGTCTAGCTTATTTGCTGATTGAGTTCGTCCTTGGGCGCAATGCTGCACATCAAGACTAACATGTGTTTTTTTTTTTTGGTATGTATTGAGTATTCTGTATTCTAGTGA-CTTGAGTACAATGCGAATGGGTACTAGCAA] [+] EMBL AK099630 [CTCTTCCTCCCGCCCCCGACCTCTCTTCCCTATCCACCCCATCCATGGCTGCCTCCTCCCACTACGCCCTCCTCCACCACCACCTCCCCAACCCTCTCCATCCCCGTCACCTCTCCTCCTCCTCCTCCCCTTCTCCTCCCCCTCCTCTCCACCTCCACCTCCACCTCCACCGCCACCGCCTCGCCCTCTCCACCGCCCGTTTCTTCCGCCTCGCGGAGCGGCGAGCCAGCGCGGGGCCACTGGTGTTCGAAACGGAGGAGGAGAGGAGTGGGTGGTCGGGTGCGGAGGCAGCGGAGTCGAACTACGACGATGAGGAGGATGAGGAGGAGGAGCAAGGGTGGGCGGGCGGCAATGCCGCGGGGTGGCGCGGGGAGAGCCACGAGGATGATCAGGAGGAGGGTTCCGGTTCCGGGGAGGGGCGGAGGCCGCGGCGGTCGCGGCCGCGCGAGCTGTTCGTATGCAATCTTCCCCGCCGCTGCGACGTCGACGACCTCTACGAGCTCTTCAAGCCCTACGGCACCGTCCTCTCCGTTGAGATTTCCCGTGACCCTGAGACTGGACTTAGCCGAGGATGTGGTTTCGTCACAATGCGTTCTCTCCCAGAAGCTCGGACAGCCATGAACGCTCTCGATGGATTTGACCTGGATGGGCGTGAAATGCTTGTAAAACTATCATCCGACGTTGTTTCTAAAAGGAGAAACATCAACATGACTCATACGCCACCTGTGAAAGACCACATCTTCGAGAGCCCACACAAGATCTACGTTGGCAACATCGCGTGGTCTGTTGAGCCACAAGAATTGCGAGAGTACTTCTCTCAGTGCGGAACCGTCGTCAGTACAAGGCTGCTGACAGATCGCAAAGGAGGGAGAGGCCGTGTCTATGGATTCCTCTCATTTGCTTCAGCTGAAGAGCTTGAGGCTGCATTGAAGCTTGACAATACGCATTTTCATGGACGGAACATCCTCGTCAGGCAAGCTCATGAAGAGCGTCAGGCACACTGAACCG TCCAGGGATTATTGGAGACCTA TTGCAATTTTGTCTAGCTTATTTGCTGATTGAGTTCGTCCTTGGGCGCAATGCTGCACATCAAGACTAACATGTGTTTTTTTTTTTTGGTATGTATTGAGTATTCTGTATTCTAGTGA CTTGAGTACAATGCGAATGGGTACTAGCAA] [+] EMBL CB964686 [ atagctgGGCTG GCGAGCTGTTCGTATGCAATCTTCCCCG CGCTGCGACGTCGACGACCTCTACGAGCTCTTCAAGCCCTACGGCACCGTCCTCTCCGTTGAGATTTCCCGTGACCCTGAGACTGGACTTAGCCGAGGATGTGGTTTCGTCACAATGCGTTCTCTCCCAGAAGCTCGGACAGCCATGAACGCTCTCGATGGATTTGACCTGGATGGGCGTGAAATGCTTGTAAAACTATCATCCGACGTTGTTTCTAAAAGGAGAAACATCAACATGACTCATACGCCACCTGTGAAAGACCACATCTTCGAGAGCCCACACAAGATCTACGTTGGCAACATCGCGTGGTCTGTTGAGCCACAAGAATTGCGAGAGTACTTCTCTCAGTGCGGAACCGTCGTCAGTACAAGGCTGCTGACAGATCGCAAAGGAGGGAGAGGCCGTGTCTATGGATTCCTCTCATTTGCTTCAGCTGAAGAGCTTGAGGCTGCATTGAAGCTTGACAATACGCATTTTCATGGACGGAACATCCTCGTCAGGCAAGCTCATGAAGAGCGTCAGGCACACTGAACCG TCCANGGATTATTGGAGACCTA TTGCAATTTTGTCTAGCTTATTTGCTGATTGAGTTCGTCCTTGGGCGCAATGCTGCACATCAAGACTAACATGTG TTTTTTTTATTGGTATGTATTGAGTATTCTGTATTCTAGTGACCTTGAGTACCATGCGAATGGGTACTA ] [+] EMBL CB964782 [ TCGTATGCAATCTTCCCCGCCGCTGCGACGTCGACGACCTCTACGAGCTCTTCAAGCCCTACGGCACCGTCCTCTCCGTTGAGATTTCCCGTGACCCTGAGACTGGACTTAGCCGAGGATGTGGTTTCGTCACAATGCGTTCTCTCCCAGAAGCTCGGACAGCCATGAACGCTCTCGATGGATTTGACCTGGATGGGCGTGAAATGCTTGTAAAACTATCATCCGACGTTGTTTCTAAAAGGAGAAACATCAACATGACTCATACGCCACCTGTGAAAGACCACATCTTCGAGAGCCCACACAAGATCTACGTTGGCAACATCGCGTGGTCTGTTGAGCCACAAGAATTGCGAGAGTACTTCTCTCAGTGCGGAACCGTCGTCAGTACAAGGCTGCTGACAGATCGCAAAGGAGGGAGAGGCCGTGTCTATGGATTCCTCTCATTTGCTTCAGCTGAAGAGCTTGAGGCTGCATTGAAGCTTGACAATACGCATTTTCATGGACGGAACATCCTCGTCAGGCAAGCTCATGAAGAGCGTCAGGCACACTGAACCGNTCCA GGATTATTGGAGACCTATTTGCAA TTTGTCTAGCTTATTTGCTGATTGAGTTCGTCCTTGGGCGCAATGCTGCACATCAAGA ] consensusID : consensus_10592#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 803 fasta sequence [CACTAAAGGGAATAGCTTGGGCCTTGCGAGCTGTTCGTATGCAATCTTCCCCGCGCTGCGACGTCGACGACCTCTACGAGCTCTTCAAGCCCTACGGCACCGTCCTCTCCGTTGAGATTTCCCGTGACCCTGA-GACTGGACTTAGCCGAG-GATGTGGTTTC-GTCACAATGCGTTCTCTCCCAGAAGCTCGGACAGCCATGAACGCTCTCGATGGATTTGACCTGGATGGGCGTGAAATGCTTGTAAAACTATCATCCGACGTTGTTTCTAAAAGGAGAAACATCAACATGACTCATACGCCACCTGTGAAAGACCACATCTTCGAGAGCCCACACAAGATCTACGTTGGCAACATCGCGTGGTCTGTTGAGCCACAAGAATTGCGAGAGTACTTCTCTCAGTGCGGAACCGTCGTCAGTACAAGGCTGCTGACAGATCGCAAAGGAGGGAGAGGCCGTGTCTATGGATTCCTCTCATTTGCTTCAGCTGAAGAGCTTGAGGCTGCATTGAAGCTTGACAATACGCATTTTCATGGACGGAACATCCTCGTCAGGCAAGCTCATGAAGAGCGTCAGGCACACTGAACCGTCCAGGGATTATTGGAGACCTATTGGAATTTTGTCTAAGCTTATTTGCTGATTGAGTTCGTCCTTGGGGCGCAATGGTGCACATCAAGACTAACATGTGTTTCGTATTAAGGAATGTATTGAGTATCTGTATTCAGTGACTGAGTTAAGGGGAATGGGTCTAGCATCTTCCCTCGGGCGAATCTGGGCTCGAGGCCAAATCCTATAGGAGTCGAT] [+] EMBL BU673826 [CACTAAAGGGAATAGCTTGGGCCTTGCGAGCTGTTCGTATGCAATCTTCCCCGCGCTGCGACGTCGACGACCTCTACGAGCTCTTCAAGCCCTACGGCACCGTCCTCTCCGTTGAGATTTCCCGTGACCCTGA GACTGGACTTAGCCGAG GATGTGGTTTC GTCACAATGCGTTCTCTCCCAGAAGCTCGGACAGCCATGAACGCTCTCGATGGATTTGACCTGGATGGGCGTGAAATGCTTGTAAAACTATCATCCGACGTTGTTTCTAAAAGGAGAAACATCAACATGACTCATACGCCACCTGTGAAAGACCACATCTTCGAGAGCCCACACAAGATCTACGTTGGCAACATCGCGTGGTCTGTTGAGCCACAAGAATTGCGAGAGTACTTCTCTCAGTGCGGAACCGTCGTCAGTACAAGGCTGCTGACAGATCGCAAAGGAGGGAGAGGCCGTGTCTATGGATTCCTCTCATTTGCTTCAGCTGAAGAGCTTGAGGCTGCATTGAAGCTTGACAATACGCATTTTCATGGACGGAACATCCTCGTCAGGCAAGCTCATGAAGAGCGTCAGGCACACTGAACCGTCCAGGGATTATTGGAGACCTATTGGAATTTTGTCTAAGCTTATTTGCTGATTGAGTTCGTCCTTGGGGCGCAATGGTGCACATCAAGACTAACATGTGTTTCGTATTAAGGAATGTATTGAGTATCTGTATTCAGTGACTGAGTTAAGGGGAATGGGTCTAGCATCTTCCCTCGGGCGAATCTGGGCTCGAGGCCAAATCCTATAGGAGTCGAT] [+] EMBL CB964789 [ GGGAATAGC TGGGCC GGCGAGCTGTTCGTATGCAATCTTCCCCGCGCTGCGACGTCGACGACCTCTACGAGCTCTTCAAGCCCTACGGCACCGTCCTCTCCGTTGAGATTTCCCGTGACCCTGA GACTGGACTTAGCCGAG GATGTGGTTTC GTCACAATGCGTTCTCTCCCAGAAGCTCGGACAGCCATGAACGCTCTCGATGGATTTGACCTGGATGGGCGTGAAATGCTTGTAAAACTATCATCCGACGTTGTTTCTAAAAGGAGAAACATCAACATGACTCATACGCCACCTGTGAAAGACCACATCTTCGAGAGCCCACACAAGATCTACGTTGGCAACATCGCGTGGTCTGTTGAGCCACAAGAATTGCGAGAGTACTTCTCTCAGTGCGGAACCGTCGTCAGTACAAGGCTGCTGACAGATCGCAAAGGAGGGAGAGGCCGTGTCTATGGATTCCTCTCATTTGCTTCAGCTGAAGAGCTTGAGGCTGCATTGAAGCTTGACAATACGCATTTTCATGGACGGAACATCCTCGTCAGGCAAGCTCATGAAGAGCGTCAGGCACACTGAACCGTCCAGGGATTATTGGAGACCTATTGCAATTTTGTCT AGCTTATTTGCTGATTGAGTTCGTCCTT GGGCGCAATGGTGCACATCAAGACTAA ] [+] EMBL CB965986 [ GCTGTTCGTATGCAATCTTCCCCGCGCTGCGACGTCGACGACCTCTACGAGCTCTTCAAGCCCTACGGCACCGTCCTCTCCGTTGAGATTTCCCGTGACCCTGACGACTGGACTTAGCCGAGTGATGTGGTTTCTGTCACAca ] consensusID : consensus_10592#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 139 fasta sequence [TTCGTATGCAATCTTCCCCGCCGCTGCGACGTCTGACGACCTCTACGATGCTCTTCAATGCCCTACGTGCACCTGTCCTCTCCTGTTGAGATTTCCCTGTGACCCTTGAGACTTGGACTTAGCCTGAGTGATGTTGTGT] [+] EMBL CB965988 [TTCGTATGCAATCTTCCCCGCCGCTGCGACGTCTGACGACCTCTACGATGCTCTTCAATGCCCTACGTGCACCTGTCCTCTCCTGTTGAGATTTCCCTGTGACCCTTGAGACTTGGACTTAGCCTGAGTGATGTTGTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10592#0 CTCTTCCTCCCGCCCCCGACCTCTCTTCCCTATCCACCCCATCCATGGCTGCCTCCTCCC 60 consensus_10592#2 ------------------------------------------------------------ consensus_10592#1 ------------------------------------------------------------ consensus_10592#0 ACTACGCCCTCCTCCACCACCACCTCCCCAACCCTCTCCATCCCCGTCACCTCTCCTCCT 120 consensus_10592#2 ------------------------------------------------------------ consensus_10592#1 ------------------------------------------------------------ consensus_10592#0 CCTCCTCCCCTTCTCCTCCCCCTCCTCTCCACCTCCACCTCCACCTCCACCGCCACCGCC 180 consensus_10592#2 ------------------------------------------------------------ consensus_10592#1 ------------------------------------------------------------ consensus_10592#0 TCGCCCTCTCCACCGCCCGTTTCTTCCGCCTCGCGGAGCGGCGAGCCAGCGCGGGGCCAC 240 consensus_10592#2 ------------------------------------------------------------ consensus_10592#1 ------------------------------------------------------------ consensus_10592#0 TGGTGTTCGAAACGGAGGAGGAGAGGAGTGGGTGGTCGGGTGCGGAGGCAGCGGAGTCGA 300 consensus_10592#2 ------------------------------------------------------------ consensus_10592#1 ------------------------------------------------------------ consensus_10592#0 ACTACGACGATGAGGAGGATGAGGAGGAGGAGCAAGGGTGGGCGGGCGGCAATGCCGCGG 360 consensus_10592#2 ------------------------------------------------------------ consensus_10592#1 ------------------------------------------------------------ consensus_10592#0 GGTGGCGCGGGGAGAGCCACGAGGATGATCAGGAGGAGGGTTCCGGTTCCGGGGAGGGGC 420 consensus_10592#2 ------------------------------------------------------------ consensus_10592#1 -----------------------------------------------------------C 1 consensus_10592#0 GGAGGCCGCGGCGGTCGCGGCCGCGCGAGCTGTTCGTATGCAATCTTCCCCGCCGCTGCG 480 consensus_10592#2 --------------------------------TTCGTATGCAATCTTCCCCGCCGCTGCG 28 consensus_10592#1 ACTAAAGGGAATAGCTTGGGCCTTGCGAGCTGTTCGTATGCAATCTTCCCCGC-GCTGCG 60 ********************* ****** consensus_10592#0 ACGTC-GACGACCTCTACGA-GCTCTTCAA-GCCCTACG-GCACC-GTCCTCTCC-GTTG 534 consensus_10592#2 ACGTCTGACGACCTCTACGATGCTCTTCAATGCCCTACGTGCACCTGTCCTCTCCTGTTG 88 consensus_10592#1 ACGTC-GACGACCTCTACGA-GCTCTTCAA-GCCCTACG-GCACC-GTCCTCTCC-GTTG 114 ***** ************** ********* ******** ***** ********* **** consensus_10592#0 AGATTTCCC-GTGACCCT-GAGACT-GGACTTAGCCGAGGATGTGGTTTCGTCACAATGC 591 consensus_10592#2 AGATTTCCCTGTGACCCTTGAGACTTGGACTTAGCCT-GAGTGATGTTGTGT-------- 139 consensus_10592#1 AGATTTCCC-GTGACCCT-GAGACT-GGACTTAGCCGAGGATGTGGTTTCGTCACAATGC 171 ********* ******** ****** ********** * ** *** ** consensus_10592#0 GTTCTCTCCCAGAAGCTCGGACAGCCATGAACGCTCTCGATGGATTTGACCTGGATGGGC 651 consensus_10592#2 ------------------------------------------------------------ consensus_10592#1 GTTCTCTCCCAGAAGCTCGGACAGCCATGAACGCTCTCGATGGATTTGACCTGGATGGGC 231 consensus_10592#0 GTGAAATGCTTGTAAAACTATCATCCGACGTTGTTTCTAAAAGGAGAAACATCAACATGA 711 consensus_10592#2 ------------------------------------------------------------ consensus_10592#1 GTGAAATGCTTGTAAAACTATCATCCGACGTTGTTTCTAAAAGGAGAAACATCAACATGA 291 consensus_10592#0 CTCATACGCCACCTGTGAAAGACCACATCTTCGAGAGCCCACACAAGATCTACGTTGGCA 771 consensus_10592#2 ------------------------------------------------------------ consensus_10592#1 CTCATACGCCACCTGTGAAAGACCACATCTTCGAGAGCCCACACAAGATCTACGTTGGCA 351 consensus_10592#0 ACATCGCGTGGTCTGTTGAGCCACAAGAATTGCGAGAGTACTTCTCTCAGTGCGGAACCG 831 consensus_10592#2 ------------------------------------------------------------ consensus_10592#1 ACATCGCGTGGTCTGTTGAGCCACAAGAATTGCGAGAGTACTTCTCTCAGTGCGGAACCG 411 consensus_10592#0 TCGTCAGTACAAGGCTGCTGACAGATCGCAAAGGAGGGAGAGGCCGTGTCTATGGATTCC 891 consensus_10592#2 ------------------------------------------------------------ consensus_10592#1 TCGTCAGTACAAGGCTGCTGACAGATCGCAAAGGAGGGAGAGGCCGTGTCTATGGATTCC 471 consensus_10592#0 TCTCATTTGCTTCAGCTGAAGAGCTTGAGGCTGCATTGAAGCTTGACAATACGCATTTTC 951 consensus_10592#2 ------------------------------------------------------------ consensus_10592#1 TCTCATTTGCTTCAGCTGAAGAGCTTGAGGCTGCATTGAAGCTTGACAATACGCATTTTC 531 consensus_10592#0 ATGGACGGAACATCCTCGTCAGGCAAGCTCATGAAGAGCGTCAGGCACACTGAACCGTCC 1011 consensus_10592#2 ------------------------------------------------------------ consensus_10592#1 ATGGACGGAACATCCTCGTCAGGCAAGCTCATGAAGAGCGTCAGGCACACTGAACCGTCC 591 consensus_10592#0 AGGGATTATTGGAGACCTATTGCAATTTTGTCTA-GCTTATTTGCTGATTGAGTTCGTCC 1070 consensus_10592#2 ------------------------------------------------------------ consensus_10592#1 AGGGATTATTGGAGACCTATTGGAATTTTGTCTAAGCTTATTTGCTGATTGAGTTCGTCC 651 consensus_10592#0 TTGGG-CGCAATGCTGCACATCAAGACTAACATGTGTTTTTTTTTTTTGGTATGTATTGA 1129 consensus_10592#2 ------------------------------------------------------------ consensus_10592#1 TTGGGGCGCAATGGTGCACATCAAGACTAACATGTGTTTCGTATTAA-GGAATGTATTGA 710 consensus_10592#0 GTATTCTGTATTCTAGTGACTTGAGTACAATGCGAATGGGTACTAGCAA----------- 1178 consensus_10592#2 ------------------------------------------------------------ consensus_10592#1 GTAT-CTGTATTC-AGTGACTGAGTTAAGGGGAATGGGTCTAGCATCTTCCCTCGGGCGA 768 consensus_10592#0 ----------------------------------- consensus_10592#2 ----------------------------------- consensus_10592#1 ATCTGGGCTCGAGGCCAAATCCTATAGGAGTCGAT 803 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||