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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10597#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2011 fasta sequence
[CTCTTAACTATATTACGTAAAAATTACGGCATTCGCTTTAAGCGTCAGTGCGTCACACATAGTGTTGCAAAGGAAAAATGATGTGACCGTATATGTGCTAGGACGAAGATCTTAGAAACAGAGAGTACCCGCAAGAGCTTCACTTGTCGATGTCTTTATCCAAAATTCCTTCCTGAATCATTATTGGAGTAATTTTAATCAGCTGATGCTAAAACTGTCATCCCTATCACATC-ATCTGAGAACATATATAATTACGTGCTCTATTTGGACTACACGATGCTGTCATCGTAACTAAAATAGCTATAAGCATCAGTAATGCCATTTAGGTCTCAACTCCTCTTCTTCCTCGGTCAACTCCTG-GTATCTGTACCATTG-CGATGCTG-CTTTACCAACAGGCAATGGAGGTCGGACAAAGATCTCAACAGGCTTGGGAACATGTACTCTCAAATGCAGTTCACCACTCTCATTGTCTTCTTCCTCAGCACTCTCATCTGGGTTGCTTGATGGCACACCAAGTGGCTCAACCGCAACCCACCCGAGACCAGAAATTGCAATGTCACAAGCAGGTCTATCAGACTCTTCGTATTTTATCTGCAACTCACGAACACCCTGCAGACCAACCCATCCTTCAGCCTTCTCTTTGCCAGCTGGGGGAGTCAATGTAACTCCAACTTCTCTCTCATAAAATTCATCTGCTTCTGTGGTTGGGACCATATTAATCTTTAGCTTCTTGGGTCCATAGAACGTCAGTCGTGTGCGTGGAAGAGCCTTGACAACATCAATACGGACTAGTCCACCCCAGAATAATGAATTCCCACTCAATCCAACATCTGTATCATTAGCCTGAACACAACATTATATTAGGAAAACACCGTGCCCTTAGACGACTTTGTGGTGCAAGAGAAGGCAGATCATCAGCATGGATAACTGCTGCTTGCCGGTGGTGAAGATGGACTCCAGGTGTATCATATAATTTCCCGCCTCCTAAAAATGCTTCAATTTGAATAGGACCAAGGGTCGTTCCAGGAACAGCAGATTGTATCGGCTTGTATTTTTGAGTTGCAGCTGCCACTGGATCCTTATATGCCATCGTCCTTAGCATAGCACTTATAAATGCAGATTTCCCAACATTTGCTGAACCCAGTATATATACATCTCGGCCCTTCTTTTCCTGCTGAATCTGGATATAACCCCAGTGACGCCACCGAGTGACTTTGAGCTTGTCAAATGGACACTAAGTTCGCTGAGCTTCTTCTTGACAACTGCCTCAACAACCCAGTCGCCAATGCAATTCAAATCTGTATCTCTAGGAAGGAGATCAACCTTTGTGATGAGTAGTATAATAGGATTAGCACCAGCAAAATCGCGCACACGCGCCAGGAAGCTCCCATTGAAGTCAACTATGTCAACCAGCTTGATAATCAAAGCTTTCTCATGACGAAGGTAGGAGAGCTTGTCCCTGAGTTGGTCCGCGGAAAAGAGGTGCTTCCCTCCAGGATAGCCGCCATGGCCACCAACAGCAGTGATCATGTGGCCATGAGACAAGAGCTTGCATCTCCCACATAGCACGGTTCTCAGCTGATGGTGTCTCTTCTTCAGGTCGTAGGTGGCGGGGTGGACGTAGCCGGGCGCGGCCTCGTCGGCCGTCTGCAGCGGCGCGCCGCAGCCGTAGCAGGCGGCGGCGGAGGGCTTCCGCGCGAGGGCCTTGCGCTTCTCCCGGCGGCGGCGGCGCCTCTCGGCGTCCTCCGGAGCGAGGACGCGGGCGGCGGCCTCGGCCGCGAGCTGGGTGCCGAGGAAGCGGTCCCCGCGGGATGGCGCGGCGGGGCCCGCCCCTTCCGGAGGTGGCGGGGCGGTGGAGGCGGCGCGCGTGGGGGAGAACGAGGAGGGGTTGGGGGCGAGCTGTGGCTTGGGGAGGGAGAGGGAGAGGAAGAGTAGCCGCTGGCTCAGGCTCAGCAGAGGAGGCGCCGCCATTGCCGCCGATGCTCTACTAGTACTAGGAGCAGAAGGAGAA]
[+] EMBL CB635975 [CTCTTAACTATATTACGTAAAAATTACGGCATTCGCTTTAAGCGTCAGTGCGTCACACATAGTGTTGCAAAGGAAAAATGATGTGACCGTATATGTGCTAGGACGAAGATCTTAGAAACAGAGAGTACCCGCAAGAGCTTCACTTGTCGATGTCTTTATCCAAAATTCCTTCCTGAATCATTATTGGAGTAATTTTAATCAGCTGATGCTAAAACTGTCATCCCTATCACATC ATCTGAGAACATATATAATTACGTGCTCTATTTGGACTACACGATGCTGTCATCGTAACTAAAATAGCTATAAGCATCAGTAATGCCATTTAGGTCTCAACTCCTCTTCTTCCTCGGTCAACTCCTG GTATCTGTACCATTG CGATGCTG CTTTACCAACAGGCAATGGAGGTCGGACAAAGATCTCAACAGGCTTGGGAACATGTACTCTCAAATGCAGTTCACCACTCTCATTGTCTTCTTCCTCAGCACTCTCATCTGGGTTGCTTGATGGCACACCAAGTGGCTCAACCGCAACCCACCCGAGACCAGAAATTGCAATGTCACAAGCAGGTCTATCAGACTCTTCGTATTTTATCTGCAACTCACGAACACCCTGCAGACCAACCCATCCTTCAGCCTTCTCTTTGCCAGCTGGGGGAGTCAATGTAACTCCAACTTCTCTCTCATAAAATTCATCTGCTTCTGTGGTTGGGAC ]
[+] EMBL CB669582 [ tctttttTTTATCCAAAATTCCTTCCTGAATCATTATTGGAGTAATTTTAATCAGCTGATGCTAAAACTGTCATCCCTATCACATC ATCTGAGAACATATATAATTACGTGCTCTATTTGGACTACACGATGCTGTCATCGTAACTAAAATAGCTATAAGCATCAGTAATGCCATTTAGGTCTCAACTCCTCTTCTTCCTCGGTCAACTCCTG GTATCTGTACCATTG CGATGCTG CTTTACCAACAGGCAATGGAGGTCGGACAAAGATCTCAACAGGCTTGGGAACATGTACTCTCAAATGCAGTTCACCACTCTCATTGTCTTCTTCCTCAGCACTCTCATCTGGGTTGCTTGATGGCACACCAAGTGGCTCAACCGCAACCCACCCGAGACCAGAAATTGCAATGTCACAAGCAGGTCTATCAGACTCTTCGTATTTTATCTGCAACTCACGAACACCCTGCAGACCAACCCATCCTTCAGCCTTCTCTTTGCCAGCTGGGGGAGTCAATGTAACTCCAACTTCTCTCTCATAAAATTCATCTGCTTCTGTGGTTGGGACCATATTAATCTTTAGCTTCTTGGGTCCATAGAACGTCAGTCGTGTGCGTGGAAGAGCCTTGACAACATCAATACGGACTAGTCCACCCCAGAATAATGAATTCCCACTCAATCCAACATCTGTATCATTAGCCTGAACACAACATTATATTAGGAAAACACCGTGCCCTTAGACGACTTTGTGGTGCAAGAGAAGGCAGATCATCAGCATGGATAAC ]
[+] EMBL CB669543 [ CTGATGCTAAAACTGTCATCCCTATCACATCGATCTGAGAACATATATAATTACGTGCTCGATTTGGACTACACGATGCTGTCATCGGAACTAAAATAGCTATAGGCATCAGTAATGCCATTTAGGACTCAACTCCTCTTCTTCCTCGGTCAACTCCTGAGAATCTGTACCATTGTCGATGCTGTCTTTACCAACAGGCAATGGAGGTCGGACAAAGATCTCAACAGGCTTGGGAACATGTACTCTCAAATGCAGTTCACCACTCGCATTGTCTTCTTCCTCACCACTCTCATCTGGGTTGCTTGATGGCACACCAGGTGGCTCAACCGCAACCCACCCGAGACCAAAAATTGCAATGTCACAAGCAGGTCTATCAGACTCTTCATATTTTATCTGCAACTCACGAACACCCTGCAGACCAACCCATCCTTCAGCCTTCTCTTTGCCAGCTGGGGGAGTCAATGTAACTCCAACTTCTCTCTCATAAAATTCATCTGCTTCTGTGGATGGGACCATATTAATCTTTAGCTTCTTGGGGCCATAGAACGACAGGCGTGTGCGTGGAAGATCCTTGACAACATCAATACGGACTACTCCACCCCAGAATAATGAATTCCCACTCAATCCAACATCTGTATCATTAGCCTGAACACTACATTATATTAGGAAAACACCGTGCCCTTAGA ]
[-] EMBL CB669581 [ TGAATTCCCACTCAATCCAACATCTGTATCATTAGCCTGAACGCAACATTATATTAGGAAAACACCGTGCCCGTAGACGACTTTGTGGTGCAAGAGAAGGCAGATCATCAGCATGGATAACTGCTGCTTGCCGGTGGTGAAGATGGACTCCAGGTGTATCATATAATTTCCCGCCTCCTAAAAATGCTTCAATTTGAATAGGACCAAGGGTCGTTCCAGGAACAGCAGATTGTATCGGCTTGTATTTTTGAGTTGCAGCTGCCACTGGATCCTTATATGCCATCGTCCTTAGCATAGCACTTATAAATGCAGATTTCCCAACATTTGCTGAACCCAGTATATATACATCTCGGCCCTTCTTTTCCTGCTGAATCTGGATATAACCCCAGTGACGCCACCGAGTGACTTTGAGCTTGTCAAATGGACACTAAGTTCGCTGAGCTTCTTCTTGACAACTGCCTCAACAACCCAGTCGCCAATGCAATTCAAATCTGTATCTCTAGGAAGGAGATCAACCTTTGTGATGAGTAGTATAATAGGATTAGCACCAGCAAAATCGCGCACACGCGCCAGGAAGCTCCCATTGAAGTCAACTATGTCAACCAGCTTGATAATCAAAGCTTTCTCATGACGAAGGTAGGAGAGCTTGTCCCTGAGTTGGTCCGCGGAAAAGAGGTGCTTCCC ]
[-] EMBL CB669542 [ caGACTTTGTGGTGCAAGAGAAGGCAGATCATCAGCATGGATAACTGCTGCTTGCCGGTGGTGAAGATGGACTCCAGGTGTATCATATAATTTCCCGCCTCCTAAAAATGCTTCAATGAGAATAGGGCCACGGGTCGTTCCAGGAACAGCAGATTGTATCGGCTTGTATTTTTGAGTTGCAGCTGCCACTGGATCCTTATATGCCATCGTCCGTAGCATAGCACTTATAAATGCAGATTTCCCTTCATTGTCTGAACCCAGTATATATACATCTCGGCC ]
[-] EMBL CB635974 [ TTGTGATGACTAGTATAATAGGATTAGCACCAGCAAAATCGCGCACACGCGCCAGGAAGCTCCCAGTGAAGTCAACTATGTCAACCAGCTTGATAATCAAAGCTTTCTCATGACGAAGGTAGGAGAGCTTGTCCCTGAGTTGGTCCGCGGAAACGAACTGCTTCCCTCCAGGATAGCCGCCATGGCCACCAACAGCAGTGATCATGTGGCCATGAGACAAGAGCTTGCATCTCCCACATAGCACGGTTCTCAGCTGATGGTGTCTCTTCTTCAGGTCGTAGGTGGCGGGGTGGACGTAGCCGGGCGCGGCCTCGTCGGCCGTCTGCAGCGGCGCGCCGCAGCCGTAGCAGGCGGCGGCGGAGGGCTTCCGCGCGAGGGCCTTGCGCTTCTCCCGGCGGCGGCGGCGCCTCTCGGCGTCCTCCGGAGCGAGGACGCGGGCGGCGGCCTCGGCCGCGAGCTGGGTGCCGAGGAAGCGGTCCCCGCGGGATGGCGCGGCGGGGCCCGCCCCTTCCGGAGGTGGCGGGGCGGTGGAGGCGGCGCGCGTGGGGGAGAACGAGGAGGGGTTGGGGGCGAGCTGTGGCTTGGGGAGGGAGAGGGAGAGGAAGAGTAGCCGCTGGCTCAGGCTCAGCAGAGGAGGCGCCGCCATTGCCGCCGATGCTCTACTAGTACTAGGAGCAGAAGGAGAA]
consensusID : consensus_10597#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence
[CCATACTAATCATTGTAGCGTTCTTGGGCTCCACTAGAACAGTCATCTCTGTGCTGCCCCGCGAAGAGCCCTTTCGACGGACATCCATATCGGATTAGTCCACCCCAGAATAATGAACTTCCCACTCGATCCCACATCTGTATCATTAGCAGGAAACACCGGGCCCTTAGACGACTGTGTGGTGCAAGAGAAGGCAGATCATCACCATGGATAACTGCTGCTTGCCGCTAGTTTAG]
[+] EMBL BI810511 [CCATACTAATCATTGTAGCGTTCTTGGGCTCCACTAGAACAGTCATCTCTGTGCTGCCCCGCGAAGAGCCCTTTCGACGGACATCCATATCGGATTAGTCCACCCCAGAATAATGAACTTCCCACTCGATCCCACATCTGTATCATTAGCAGGAAACACCGGGCCCTTAGACGACTGTGTGGTGCAAGAGAAGGCAGATCATCACCATGGATAACTGCTGCTTGCCGCTAGTTTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10597#0 CTCTTAACTATATTACGTAAAAATTACGGCATTCGCTTTAAGCGTCAGTGCGTCACACAT 60
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 AGTGTTGCAAAGGAAAAATGATGTGACCGTATATGTGCTAGGACGAAGATCTTAGAAACA 120
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 GAGAGTACCCGCAAGAGCTTCACTTGTCGATGTCTTTATCCAAAATTCCTTCCTGAATCA 180
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 TTATTGGAGTAATTTTAATCAGCTGATGCTAAAACTGTCATCCCTATCACATCATCTGAG 240
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 AACATATATAATTACGTGCTCTATTTGGACTACACGATGCTGTCATCGTAACTAAAATAG 300
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 CTATAAGCATCAGTAATGCCATTTAGGTCTCAACTCCTCTTCTTCCTCGGTCAACTCCTG 360
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 GTATCTGTACCATTGCGATGCTGCTTTACCAACAGGCAATGGAGGTCGGACAAAGATCTC 420
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 AACAGGCTTGGGAACATGTACTCTCAAATGCAGTTCACCACTCTCATTGTCTTCTTCCTC 480
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 AGCACTCTCATCTGGGTTGCTTGATGGCACACCAAGTGGCTCAACCGCAACCCACCCGAG 540
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 ACCAGAAATTGCAATGTCACAAGCAGGTCTATCAGACTCTTCGTATTTTATCTGCAACTC 600
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 ACGAACACCCTGCAGACCAACCCATCCTTCAGCCTTCTCTTTGCCAGCTGGGGGAGTCAA 660
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 TGTAACTCCAACTTCTCTCTCATAAAATTCATCTGCTTCTGTGGTTGGGACCATATTAAT 720
consensus_10597#1 --------------------------------------CCATACTAATCATTGTAGCGTT 22
* * * * ** *
consensus_10597#0 CTTTAGCTTCTTGGGTCCATAGAACGTCAGTCGTGTGCGTGGAAGAGCCTT---GACA-A 776
consensus_10597#1 CTTGGGCTCCACTAGAACAGTCATC-TCTGTGCTGCCCCGCGAAGAGCCCTTTCGACGGA 81
*** *** * * ** * * ** ** ** * ******** * *** *
consensus_10597#0 CATCAATA-CGGACTAGTCCACCCCAGAATAATGAA-TTCCCACTCAATCCAACATCTGT 834
consensus_10597#1 CATCCATATCGGATTAGTCCACCCCAGAATAATGAACTTCCCACTCGATCCCACATCTGT 141
**** *** **** ********************** ********* **** ********
consensus_10597#0 ATCATTAGCCTGAACACAACATTATATTAGGAAAACACCGTGCCCTTAGACGACTTTGTG 894
consensus_10597#1 ATCATTAGC--------------------AGGAAACACCGGGCCCTTAGACGACTGTGTG 181
********* * ******** ************** ****
consensus_10597#0 GTGCAAGAGAAGGCAGATCATCAGCATGGATAACTGCTGCTTGCCGGTGGTGAAGATGGA 954
consensus_10597#1 GTGCAAGAGAAGGCAGATCATCACCATGGATAACTGCTGCTTGCCGCTAGTTTAG----- 236
*********************** ********************** * ** **
consensus_10597#0 CTCCAGGTGTATCATATAATTTCCCGCCTCCTAAAAATGCTTCAATTTGAATAGGACCAA 1014
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 GGGTCGTTCCAGGAACAGCAGATTGTATCGGCTTGTATTTTTGAGTTGCAGCTGCCACTG 1074
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 GATCCTTATATGCCATCGTCCTTAGCATAGCACTTATAAATGCAGATTTCCCAACATTTG 1134
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 CTGAACCCAGTATATATACATCTCGGCCCTTCTTTTCCTGCTGAATCTGGATATAACCCC 1194
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 AGTGACGCCACCGAGTGACTTTGAGCTTGTCAAATGGACACTAAGTTCGCTGAGCTTCTT 1254
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 CTTGACAACTGCCTCAACAACCCAGTCGCCAATGCAATTCAAATCTGTATCTCTAGGAAG 1314
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 GAGATCAACCTTTGTGATGAGTAGTATAATAGGATTAGCACCAGCAAAATCGCGCACACG 1374
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 CGCCAGGAAGCTCCCATTGAAGTCAACTATGTCAACCAGCTTGATAATCAAAGCTTTCTC 1434
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 ATGACGAAGGTAGGAGAGCTTGTCCCTGAGTTGGTCCGCGGAAAAGAGGTGCTTCCCTCC 1494
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 AGGATAGCCGCCATGGCCACCAACAGCAGTGATCATGTGGCCATGAGACAAGAGCTTGCA 1554
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 TCTCCCACATAGCACGGTTCTCAGCTGATGGTGTCTCTTCTTCAGGTCGTAGGTGGCGGG 1614
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 GTGGACGTAGCCGGGCGCGGCCTCGTCGGCCGTCTGCAGCGGCGCGCCGCAGCCGTAGCA 1674
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 GGCGGCGGCGGAGGGCTTCCGCGCGAGGGCCTTGCGCTTCTCCCGGCGGCGGCGGCGCCT 1734
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 CTCGGCGTCCTCCGGAGCGAGGACGCGGGCGGCGGCCTCGGCCGCGAGCTGGGTGCCGAG 1794
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 GAAGCGGTCCCCGCGGGATGGCGCGGCGGGGCCCGCCCCTTCCGGAGGTGGCGGGGCGGT 1854
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 GGAGGCGGCGCGCGTGGGGGAGAACGAGGAGGGGTTGGGGGCGAGCTGTGGCTTGGGGAG 1914
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 GGAGAGGGAGAGGAAGAGTAGCCGCTGGCTCAGGCTCAGCAGAGGAGGCGCCGCCATTGC 1974
consensus_10597#1 ------------------------------------------------------------
consensus_10597#0 CGCCGATGCTCTACTAGTACTAGGAGCAGAAGGAGAA 2011
consensus_10597#1 -------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||