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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10604#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1180 fasta sequence
[CAGAGCACAGCACGGGTTGTCCCCGGTTTACCACAATCCTTTCGTGCTCCGCTCAGGTTGCGTGTTTGGCCCTAGGGTTTACTTCGCCGTCCTCCTCTCGTCCCTCTCCTCCCGCGGTCCCGTCGTCGGCGAGGCCAGGGGATCGAGCGGCCGGCGGCCGATCGAGGCGGCGGCGGCGATGGCGCACAAGATCCCCCTGGAGGTGGCGCACACGCTCGTGGAGATCGCGGAGGTGGCTCGCTACGCCATCGAGCACCGCCGCGGCCACGGCCCGGCCCACGACGGCGTCTCCCCCCCGGCGGTGGACGGGGAGGAGGCCGAGCGGCTGCGGGCGGAGAACGTTATCCTCCGCGCTCGCCTCGCCGACGACCTCTCCATCCTCCGCGAGCTCCAAGGCGAGCCCTGTGTTTCCCAGGAGTGCCCTGCCGATCTGCATAATCGTCTTGTAGCAGCAGTTAACAATGCTAGCTTCTTGGCTCAGCTTGAGAAAATTCGAGATGAGTCAAGGCATCAACAAACAGAGCTATCTCCTGATAACATGACAGATATTCCATACACTGAAGGTGGCGGGAAGAATGGATCTTGGGTCTTGGTTGCCTGTGATAAACCCGGGGCAAATATGGAGGAAATCAGTGGAATTGATAATGAAAATTATGTACTTGTTAATGATGATGACATTATTGATGGTATGACCTCCTTTATTGCTAGGTGCATTCTTGAAGATCCAAAGTCCAAGTCAATATCACCAGTGGAGCTGCAAAAGGCTGTTGCAATGGCATTGAGCACCCTTAATGATAA-GTGGAAATGGATGAGTATTTGGGAGGCTGGAAAAGTGCTTTACATATTGGCAACATGGGGAATCACAATAGTGGGGTTGTATAGGAGTCGCCAC-GTGCTGAAAATTGCAGCCAAGGGAGCTGTCGTGTCTGCCAAATTCGTCATGAAGGCACTGTGAAGTGTGAAAGCAGTGAAATTATGCATGCGCGATGATCAGCAATTTGTACATACAAAAACTATCCTTGTCAATTGTACAT-ATGTGAAATTGTGAATT-ATGGTTTGTTCTGAACTGTTTGTTCAGAAGCGTCATAACTCATAAA--TTATGAAATGTGAAATGGTGG-AAGAATTCGTTTATTGAGTCTGTATAATGATACATCTGCTTGACAAGTTGACATATTCTCTC]
[+] EMBL AK071171 [CAGAGCACAGCACGGGTTGTCCCCGGTTTACCACAATCCTTTCGTGCTCCGCTCAGGTTGCGTGTTTGGCCCTAGGGTTTACTTCGCCGTCCTCCTCTCGTCCCTCTCCTCCCGCGGTCCCGTCGTCGGCGAGGCCAGGGGATCGAGCGGCCGGCGGCCGATCGAGGCGGCGGCGGCGATGGCGCACAAGATCCCCCTGGAGGTGGCGCACACGCTCGTGGAGATCGCGGAGGTGGCTCGCTACGCCATCGAGCACCGCCGCGGCCACGGCCCGGCCCACGACGGCGTCTCCCCCCCGGCGGTGGACGGGGAGGAGGCCGAGCGGCTGCGGGCGGAGAACGTTATCCTCCGCGCTCGCCTCGCCGACGACCTCTCCATCCTCCGCGAGCTCCAAGGCGAGCCCTGTGTTTCCCAGGAGTGCCCTGCCGATCTGCATAATCGTCTTGTAGCAGCAGTTAACAATGCTAGCTTCTTGGCTCAGCTTGAGAAAATTCGAGATGAGTCAAGGCATCAACAAACAGAGCTATCTCCTGATAACATGACAGATATTCCATACACTGAAGGTGGCGGGAAGAATGGATCTTGGGTCTTGGTTGCCTGTGATAAACCCGGGGCAAATATGGAGGAAATCAGTGGAATTGATAATGAAAATTATGTACTTGTTAATGATGATGACATTATTGATGGTATGACCTCCTTTATTGCTAGGTGCATTCTTGAAGATCCAAAGTCCAAGTCAATATCACCAGTGGAGCTGCAAAAGGCTGTTGCAATGGCATTGAGCACCCTTAATGATAA GTGGAAATGGATGAGTATTTGGGAGGCTGGAAAAGTGCTTTACATATTGGCAACATGGGGAATCACAATAGTGGGGTTGTATAGGAGTCGCCAC GTGCTGAAAATTGCAGCCAAGGGAGCTGTCGTGTCTGCCAAATTCGTCATGAAGGCACTGTGAAGTGTGAAAGCAGTGAAATTATGCATGCGCGATGATCAGCAATTTGTACATACAAAAACTATCCTTGTCAATTGTACAT ATGTGAAATTGTGAATT ATGGTTTGTTCTGAACTGTTTGTTCAGAAGCGTCATAACTCATAAA TTATGAAATGTGAAATGGTGG AAGAATTCGTTTATTGAGTCTGTATAATGATACATCTGCTTGACAAGTTGACATATTCTCTC]
[+] EMBL CB685734 [ TACCACTTTCCTTTCGTGCTCCGCTCAGGTTGCGTGTTTGGCCCTAGGGTTTACTTCGCCGTCCTCCTCTCGTCCCTCTCCTCCCGCGGTCCCGTCGTCGGCGAGGCCAGGGGATCGAGCGGCCGGCGGCCGATCGAGGCGGCGGCGGCGATGGCGCACAAGATCCCCCTGGAGGTGGCGCACACGCTCGTGGAGATCGCGGAGGTGGCTCGCTACGCCATCGAGCACCGCCGCGGCCACGGCCCGGCCCACGACGGCGTCTCCCCCCCGGCGGTG ]
[-] EMBL CB679229 [ ACAAAGCTAGCTTTTTGGCTCAGCTTGAGAAAATTCGAGATGAGTCAAGGCATCAACAAACAGAGCTATCTCCTGATAACATGACAGATATTCCATACCCTGAAGGTGGCGGGAAGAATGGATCTTGGGTCTTGGTTGCCTGTGATAAACCCGGGGCAAATATGGAGGAAATCAGTGGAATTGATAATGAAAATTATGTACTTGTTAATGAGGATGCCATTATTGATGGTAGGCCCTCCTTTATTGCTAGGTGCATTTTTGAAGATCCAAAGTCCAAGTCAATATCCCCAGTGGAGCTGCAAAAGGCTGTTGCAATGGCATTGAGCCCCCTTAATGATAA GTGGAAATGGATGAGTATTTGGGAGGCTGGAAAAGTGCTTTACATATTGGCACCATGGGGAATCCCAATAGTGGGGTTGTATAGGAGTCCCCCC GTGGTGAAAATTGCACCCAAGGGAGCTGTGGGGTGTGCCAAATTTGTCATGAAGGCCCTGTGAAGTGTGAAAGCAGGGAAATTATGCATGCGCCATGATCAGCAATTTGTACATACAAAAACTCTCCTTGTCAATTGTACAT ACGAGAAATTGGGAATTCTTGGTTTGTTCTGAACTGTTTTTTCTGAAGGGTCTTAAC ]
[+] EMBL BI801304 [ GGA CTCCAAAAGGCTGTTGCAAT GCATGGACCACCCTTAATGATAAGGTGGAAATGGATGATTATTTGGGA GCTGGAAAAGTGCTTTACATATTGGCAACATGGGGAATCACAATAGT GGGTTGTATAGGAGTC CCACAGTGCTGAAAATTCCAGCCAAGGGAGCTTTCGTGTCT CCAAATTCGTCATGAAGCCACTGTGAAGTGTGAAA CAGTGAAATTATGCATGCGCGATGATCA C ATTTGTACATACAAAAACTATCCTTGTC ATTGTACATAATGTGAAATTGTGAATT ATGGTTTGTTCTGAACTGTTTGTTCAGAAGCGTCATAACTCATAAA TTATGAAATGTGAAATGGTGG AAGAATTCGTTaaa ]
[+] EMBL BQ906288 [ TAA GTGGAAATGGATGAGTATTTGGGAGGCTGGAAAAGTGCTTTACATATTGGCAACATGGGGAATCACAATAGTGGGGTTGTATAGGAGTCGCCAC GTGCTGAAAATTGCAGCCAAGGGAGCTGTCGTGTCTGCCAAATTCGTCATGAAGGCACTGTGAAGTGTGAAAGCAGTGAAATTATGCATGCGCGATGATCAGCAATTTGTACATACAAAAACTATCCTTGTCAATTGTACAT ATGTGAAATTGTGAATT ATGGTTTGTTCTGAACTGTTTGTTCAGAAGCGTCATAACTCATAAAATTTATGAAATGTGAAATGGTGGAAAGAATTCGTTTATTGAGTCTGTATAATGATACATCTGCTTGACAAGTTGACATAaaaaaa ]
consensusID : consensus_10604#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 769 fasta sequence
[GCCCTGCCGATCTGCATAATCGTCTTGTAGCAGCAGTTAACAATGCTAGCTTCTTGGCTCAGCTTGAGAAAATTCGAGATGAGTCAAGGCATCAACAAACAGAGCTATCTCCTGATAACATGACAGAACTGGATATTGCAGATATTCCATACACTGAAGGTGGCGGGAAGAATGGATCTTGGGTCTTGGTTGCCTGTGATAAACCCGGGGCAAATATGGAGGAAATCAGTGGAATTGATAATGAAAATTATGTACTTGTTAATGATGATGACATTATTGATGGTATGACCTCCTTTATTGCTAGGTGCATTCTTGAAGATCCAAAGTCCAAGTCAATATCACCAGTGGAGCTGCAAAAGGCTGTTGCAATGGCATTGAGCACCCTTAATGATAAGTGGAAATGGATGAGTATTTGGGAGGCTGGAAAAGTGCTTTACATATTGGCAACATGGGGAATCACAATAGTGGGGTTGTATAGGAGTCGCCACGTGCTGAAAATTGCAGCCAAGGGAGCTGTCGTGTCTGCCAAATTCGTCATGAAGGCACTGTGAAGTGTGAAAGCAGTGAAATTATGCATGCGCGATGATCAGCAATTTGTACATACAAAAACTATCCTTGTCAATTGTACATATGTGAAATTGTGAATTATGGTTTGTTCTGAACTGTTTGTTCAGAAGCGTCATAACTAATGAATTATGAAATGTGAAATGGTGGAAGAATTTGTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACT]
[-] EMBL CB685735 [GCCCTGCCGATCTGCATAATCGTCTTGTAGCAGCAGTTAACAATGCTAGCTTCTTGGCTCAGCTTGAGAAAATTCGAGATGAGTCAAGGCATCAACAAACAGAGCTATCTCCTGATAACATGACAGAACTGGATATTGCAGATATTCCATACACTGAAGGTGGCGGGAAGAATGGATCTTGGGTCTTGGTTGCCTGTGATAAACCCGGGGCAAATATGGAGGAAATCAGTGGAATTGATAATGAAAATTATGTACTTGTTAATGATGATGACATTATTGATGGTATGACCTCCTTTATTGCTAGGTGCATTCTTGAAGATCCAAAGTCCAAGTCAATATCACCAGTGGAGCTGCAAAAGGCTGTTGCAATGGCATTGAGCACCCTTAATGATAAGTGGAAATGGATGAGTATTTGGGAGGCTGGAAAAGTGCTTTACATATTGGCAACATGGGGAATCACAATAGTGGGGTTGTATAGGAGTCGCCACGTGCTGAAAATTGCAGCCAAGGGAGCTGTCGTGTCTGCCAAATTCGTCATGAAGGCACTGTGAAGTGTGAAAGCAGTGAAATTATGCATGCGCGATGATCAGCAATTTGTACATACAAAAACTATCCTTGTCAATTGTACATATGTGAAATTGTGAATTATGGTTTGTTCTGAACTGTTTGTTCAGAAGCGTCATAACTAATGAATTATGAAATGTGAAATGG ]
[-] EMBL CA754994 [ GTCATGAAGGCCCTGTGAAGTGTGAAAGCAGTGAAATTATGCATGCGCGATGATCAGCAATTTGTTCATACAAAAACTATCCTTGTCAATTGTACATATGTGAAATTGTGAATTATGGTTTGTTTTGAACTGTTTGTTTAGAAGGGTCATAACTCATAAATTTTGAAATGTGAAATGGTGGAAGAATTTGTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10604#0 CAGAGCACAGCACGGGTTGTCCCCGGTTTACCACAATCCTTTCGTGCTCCGCTCAGGTTG 60
consensus_10604#1 ------------------------------------------------------------
consensus_10604#0 CGTGTTTGGCCCTAGGGTTTACTTCGCCGTCCTCCTCTCGTCCCTCTCCTCCCGCGGTCC 120
consensus_10604#1 ------------------------------------------------------------
consensus_10604#0 CGTCGTCGGCGAGGCCAGGGGATCGAGCGGCCGGCGGCCGATCGAGGCGGCGGCGGCGAT 180
consensus_10604#1 ------------------------------------------------------------
consensus_10604#0 GGCGCACAAGATCCCCCTGGAGGTGGCGCACACGCTCGTGGAGATCGCGGAGGTGGCTCG 240
consensus_10604#1 ------------------------------------------------------------
consensus_10604#0 CTACGCCATCGAGCACCGCCGCGGCCACGGCCCGGCCCACGACGGCGTCTCCCCCCCGGC 300
consensus_10604#1 ------------------------------------------------------------
consensus_10604#0 GGTGGACGGGGAGGAGGCCGAGCGGCTGCGGGCGGAGAACGTTATCCTCCGCGCTCGCCT 360
consensus_10604#1 ------------------------------------------------------------
consensus_10604#0 CGCCGACGACCTCTCCATCCTCCGCGAGCTCCAAGGCGAGCCCTGTGTTTCCCAGGAGTG 420
consensus_10604#1 -----------------------------------------------------------G 1
*
consensus_10604#0 CCCTGCCGATCTGCATAATCGTCTTGTAGCAGCAGTTAACAATGCTAGCTTCTTGGCTCA 480
consensus_10604#1 CCCTGCCGATCTGCATAATCGTCTTGTAGCAGCAGTTAACAATGCTAGCTTCTTGGCTCA 61
************************************************************
consensus_10604#0 GCTTGAGAAAATTCGAGATGAGTCAAGGCATCAACAAACAGAGCTATCTCCTGATAACAT 540
consensus_10604#1 GCTTGAGAAAATTCGAGATGAGTCAAGGCATCAACAAACAGAGCTATCTCCTGATAACAT 121
************************************************************
consensus_10604#0 GACAGA---------------TATTCCATACACTGAAGGTGGCGGGAAGAATGGATCTTG 585
consensus_10604#1 GACAGAACTGGATATTGCAGATATTCCATACACTGAAGGTGGCGGGAAGAATGGATCTTG 181
****** ***************************************
consensus_10604#0 GGTCTTGGTTGCCTGTGATAAACCCGGGGCAAATATGGAGGAAATCAGTGGAATTGATAA 645
consensus_10604#1 GGTCTTGGTTGCCTGTGATAAACCCGGGGCAAATATGGAGGAAATCAGTGGAATTGATAA 241
************************************************************
consensus_10604#0 TGAAAATTATGTACTTGTTAATGATGATGACATTATTGATGGTATGACCTCCTTTATTGC 705
consensus_10604#1 TGAAAATTATGTACTTGTTAATGATGATGACATTATTGATGGTATGACCTCCTTTATTGC 301
************************************************************
consensus_10604#0 TAGGTGCATTCTTGAAGATCCAAAGTCCAAGTCAATATCACCAGTGGAGCTGCAAAAGGC 765
consensus_10604#1 TAGGTGCATTCTTGAAGATCCAAAGTCCAAGTCAATATCACCAGTGGAGCTGCAAAAGGC 361
************************************************************
consensus_10604#0 TGTTGCAATGGCATTGAGCACCCTTAATGATAAGTGGAAATGGATGAGTATTTGGGAGGC 825
consensus_10604#1 TGTTGCAATGGCATTGAGCACCCTTAATGATAAGTGGAAATGGATGAGTATTTGGGAGGC 421
************************************************************
consensus_10604#0 TGGAAAAGTGCTTTACATATTGGCAACATGGGGAATCACAATAGTGGGGTTGTATAGGAG 885
consensus_10604#1 TGGAAAAGTGCTTTACATATTGGCAACATGGGGAATCACAATAGTGGGGTTGTATAGGAG 481
************************************************************
consensus_10604#0 TCGCCACGTGCTGAAAATTGCAGCCAAGGGAGCTGTCGTGTCTGCCAAATTCGTCATGAA 945
consensus_10604#1 TCGCCACGTGCTGAAAATTGCAGCCAAGGGAGCTGTCGTGTCTGCCAAATTCGTCATGAA 541
************************************************************
consensus_10604#0 GGCACTGTGAAGTGTGAAAGCAGTGAAATTATGCATGCGCGATGATCAGCAATTTGTACA 1005
consensus_10604#1 GGCACTGTGAAGTGTGAAAGCAGTGAAATTATGCATGCGCGATGATCAGCAATTTGTACA 601
************************************************************
consensus_10604#0 TACAAAAACTATCCTTGTCAATTGTACATATGTGAAATTGTGAATTATGGTTTGTTCTGA 1065
consensus_10604#1 TACAAAAACTATCCTTGTCAATTGTACATATGTGAAATTGTGAATTATGGTTTGTTCTGA 661
************************************************************
consensus_10604#0 ACTGTTTGTTCAGAAGCGTCATAACTCATAAATTATGAAATGTGAAATGGTGGAAGAATT 1125
consensus_10604#1 ACTGTTTGTTCAGAAGCGTCATAACTAATGAATTATGAAATGTGAAATGGTGGAAGAATT 721
************************** ** ******************************
consensus_10604#0 CGTTTATTGAGTCTGTATAATGATACATCTGCTTGACAAGTTGACATATTCTCTC 1180
consensus_10604#1 TGTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACT------- 769
** * * * ** * * * * ** * ** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||