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Oryza sativa
cluster # 10622 cluster # 10622       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10622#0 length = 824 sequences # 6  
consensus_10622#1 length = 293 sequences # 1  

consensusID : consensus_10622#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 824
fasta sequence
                              [TCCGACTGGAGCACGAGGACACTGAATGGACTGAAGGAGTAGAAAAATTAGCGACCCTTCCTTTTTACCTCCAGCGAAGTCCTCTCCGGCGCTGGCTTTCTCCTCCACGGGTCTAGGGTTCCGGCCACCGCCGCCGCCGCCGCACGGGGGAGAGAGAGTGAGAGGATGAGCGGGAGCGCGTTCAACGCGTTCAAGTCGCGGGTGGCGGTGGCGTGGAGCCCCAAGCTGTACATCACGCT-GGTGCGGGGCCTCCCGGGGACGCGCCGCCTCCACCGCCGCACGCTCGAGGCCATGCGCCTCCGCCGCTGCCACCGCACCGTCGAGCACCGCACCACCCCTTCCCTCCTCGGCATGCTCACCCAGGTCAAGCGCCTCGTCGTCGTCGAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCCGAGGACGACCGCCGCGCGCCCAGGCCACCCCTCGTCGTCTCCCACCGCCCGCCCGCCGCTGCCACGCCCACGCCCACGCCCACTGCGGGCCACTAGACTCACCAGTGGGCACCAGAAGCCATTCTTCAATCAAGACTGGCTACTATATGCTTGAGACTATCTTTGCTCTCAATGATGATTTCATTGAACCTGTTCTGGTAACTCATTATTTACCAAAGTGGTCTCATCAAGCTTGTACCTTTGAAGACCGTAATGTCTTGGCCTTTGTAGTCAGTTAAATGAATAAAGCCTTTTTGATATGTTGGTGCCACT-GTCCAATCTT-GTCAGTTACTGCTTCCTCTATCATCGAAATTATTGCTGCAAAATTCACATTCCATTTATGGTTTATCACTTCATTTCAACTA]

[+] EMBL CF340039             [TCCGACTGGAGCACGAGGACACTGAATGGACTGAAGGAGTAGAAAAATTAGCGACCCTTCCTTTTTACCTCCAGCGAAGTCCTCTCCGGCGCTGGCTTTCTCCTCCACGGGTCTAGGGTTCCGGCCACCGCCGCCGCCGCCGCACGGGGGAGAGAGAGTGAGAGGATGAGCGGGAGCGCGTTCAACGCGTTCAAGTCGCGGGTGGCGGTGGCGTGGAGCCCCAAGCTGTACATCACGCT GGTGCGGGGCCTCCCGGGGACGCGCCGCCTCCACCGCCGCACGCTCGAGGCCATGCGCCTCCGCCGCTGCCACCGCACCGTCGAGCACCGCACCACCCCTTCCCTCCTCGGCATGCTCACCCAGGTCAAGCGCCTCGTCGTCGTCGAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCCGAGGACGACCGCCGCGCGCCCAGGCCACCCCTCGTCGTCTCCCACCGCCCGCCCGCCGCTGCCACGCCCACGCCCACGCCCA                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CF338622             [                       GAATGGACTGAAGGAGTAGAAAAATTAGCGACCCTTCCTTTTTACCTCCAGCGAAGTCCTCTCCGGCGCTGGCTTTCTCCTCCACGGGTCTAGGGTTCCGGCCACCGCCGCCGCCGCCGCACGGGGGAGAGAGAGTGAGAGGATGAGCGGGAGCGCGTTCAACGCGTTCAAGTCGCGGGTGGCGGTGGCGTGGAGCCCCAAGCTGTACATCACGCT GGTGCGGGGCCTNCCGGGGACGCGCCGCCTCCACCGCCGCACGCTCGAGGCCATGCGCCTCCGCCGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CF340699             [                               TGAAGGAGTAGAAAAATTAGCGACCCTTCCTTTTTACCTCCAGCGAAGTCCTCTCCGGCGCTGGCTTTCTCCTCCACGGGTCTAGGGTTCCGGCCACCGCCGCCGCCGCCGCACGGGGGAGAGAGAGTGAGAGGATGAGCGGGAGCGCGTTCAACGCGTTC AGTCGCGGGTGGCGGTGGCGTGGAGCCCCAAGCTGTACATCACGCTGGGTGCGGNGCCTCCCGGGGACGCGCCGCCTCCACCGCCGCACGCTCGAGGCCATGCGCCTCCGCCGCTGCCACCGCACCGTCGAGCACCGCACCACCCCTTCCCTCCTCGGCATGCTCACCCAGGTCAAGCGCCTCGTCGTCGTCGAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCCGAGGACGACCGCCGCGCGCCCAGGCCACCCCTCGTCGTCTCCCACCGCCCGCCCGCCGTTGCCACGCCCACGCCCACGCCCACTGCGGGCCACTAGACTCACCAGTGGGCACCAGAAGCCATTCTTCAATCAAGACTGGC                                                                                                                                                                                                                                                                          ]
[+] EMBL CF340458             [                               TGAAGGAGTAGAAAAATTAGCGACCCTTCCTTTTTACCTCCAGCGAAGTCCTCTCCGGCGCTGGCTTTCTCCTCCACGGGTCTAGGGTTCCGGCCACCGCCGCCGCCGCCGCACGGGGGAGAGAGAGTGAGAGGATGAGCGGGAGCGCGTTCAACGCGTTCAAGTCGCGGGTGGCGGTGGCGTGGAGCCCCAAGCTGTACATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK063315             [                                                                                                     CCTCCACGGGTCTAGGGTTCCGGCCACCGCCGCCGCCGCCGCACGGGGGAGAGAGAGTGAGAGGATGAGCGGGAGCGCGTTCAACGCGTTCAAGTCGCGGGTGGCGGTGGCGTGGAGCCCCAAGCTGTACATCACGCT GGTGCGGGGCCTCCCGGGGACGCGCCGCCTCCACCGCCGCACGCTCGAGGCCATGCGCCTCCGCCGCTGCCACCGCACCGTCGAGCACCGCACCACCCCTTCCCTCCTCGGCATGCTCACCCAGGTCAAGCGCCTCGTCGTCGTCGAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCCGAGGACGACCGCCGCGCGCCCAGGCCACCCCTCGTCGTCTCCCACCGCCCGCCCGCCGCTGCCACGCCCACGCCCACGCCCACTGCGGGCCACTAGACTCACCAGTGGGCACCAGAAGCCATTCTTCAATAAAGACTGGCTACTATATGCTTGAGACTATCTTTGCTCTCAATGATGATTTCATTGAACCTGTTCTGGTAACTCATTATTTACCAAAGTGGTCTCATCAAGCTTGTACCTTTGAAGACCGTAATGTCTTGGCCTTTGTAGTCAGTTAAATGAATAAAGCCTTTTTGATATGTTGGTGCCACT GTCCAATCTT GTCAGTTACTGCTTCCTCTATCATCGAAATTATTGCTGCAAAATTCACATTCCATTTATGGTTTATCACTTCATTTCAACTA]
[+] EMBL AU162251             [                                                                                                                                                                                                                                                                                                                                                                                                                            AGGCAGGCCGAGGACGACCGCCGCGCGCCCAGGCCACCCCTCGTCGTCTCCCACCGCCCGCCCGCCGCTGCCACGCCCACGCCCACGCCCACTGCGGGCCACTAGACTCACCAGTGGGCACCAGAAGCCATTCTTCAATCAAGACTGGCTACTATATGCTTGAGACTATCTTTGCTCTCAATGATGATTTCATTGAACCTGTTCTGGTAACTCATTATTTACCAAAGTGGTCTCATCAAGCTTGTACCTTTGAAGACCGTAATGTCTTGGCCTTTGTAGTCAGTTAAATGAATAAAGCCTTTTTGATATGTTGGTGCCACTGGTCCAATCTTGGTCAGTTACTGCTTCCTCTATCATCGAAATTATTGCTGCAAAATTCACATTCC                             ]


>consensus_10622#0 TCCGACTGGAGCACGAGGACACTGAATGGACTGAAGGAGTAGAAAAATTAGCGACCCTTC CTTTTTACCTCCAGCGAAGTCCTCTCCGGCGCTGGCTTTCTCCTCCACGGGTCTAGGGTT CCGGCCACCGCCGCCGCCGCCGCACGGGGGAGAGAGAGTGAGAGGATGAGCGGGAGCGCG TTCAACGCGTTCAAGTCGCGGGTGGCGGTGGCGTGGAGCCCCAAGCTGTACATCACGCTG GTGCGGGGCCTCCCGGGGACGCGCCGCCTCCACCGCCGCACGCTCGAGGCCATGCGCCTC CGCCGCTGCCACCGCACCGTCGAGCACCGCACCACCCCTTCCCTCCTCGGCATGCTCACC CAGGTCAAGCGCCTCGTCGTCGTCGAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCC GAGGACGACCGCCGCGCGCCCAGGCCACCCCTCGTCGTCTCCCACCGCCCGCCCGCCGCT GCCACGCCCACGCCCACGCCCACTGCGGGCCACTAGACTCACCAGTGGGCACCAGAAGCC ATTCTTCAATCAAGACTGGCTACTATATGCTTGAGACTATCTTTGCTCTCAATGATGATT TCATTGAACCTGTTCTGGTAACTCATTATTTACCAAAGTGGTCTCATCAAGCTTGTACCT TTGAAGACCGTAATGTCTTGGCCTTTGTAGTCAGTTAAATGAATAAAGCCTTTTTGATAT GTTGGTGCCACTGTCCAATCTTGTCAGTTACTGCTTCCTCTATCATCGAAATTATTGCTG CAAAATTCACATTCCATTTATGGTTTATCACTTCATTTCAACTA



consensusID : consensus_10622#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence
                              [GCGGGAGCGCGTTCAAGGCGTTCAAGTCGCGGGTGGAGGTGGCGTGGAGCCCCAAGCTGGTGCGGGGCCTCCCAGGTACGCGCCGCCTCCACCGCCACACGCTTGAGGCCATGAGCCTCCGCCGCTGCCACCGCACCGTCGAGCACCGCACCACGCCCTCCCTGCTCGGCATGCTCACCCAGGTCAAGTGCCTCGTCGTCGTCGAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCCGAGGAGGACCGACGCGCCCCCAGGCCCCCGCTCATCGTCTCCCACACCCGCCGC]

[+] EMBL CA756244             [GCGGGAGCGCGTTCAAGGCGTTCAAGTCGCGGGTGGAGGTGGCGTGGAGCCCCAAGCTGGTGCGGGGCCTCCCAGGTACGCGCCGCCTCCACCGCCACACGCTTGAGGCCATGAGCCTCCGCCGCTGCCACCGCACCGTCGAGCACCGCACCACGCCCTCCCTGCTCGGCATGCTCACCCAGGTCAAGTGCCTCGTCGTCGTCGAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCCGAGGAGGACCGACGCGCCCCCAGGCCCCCGCTCATCGTCTCCCACACCCGCCGC]


>consensus_10622#1 GCGGGAGCGCGTTCAAGGCGTTCAAGTCGCGGGTGGAGGTGGCGTGGAGCCCCAAGCTGG TGCGGGGCCTCCCAGGTACGCGCCGCCTCCACCGCCACACGCTTGAGGCCATGAGCCTCC GCCGCTGCCACCGCACCGTCGAGCACCGCACCACGCCCTCCCTGCTCGGCATGCTCACCC AGGTCAAGTGCCTCGTCGTCGTCGAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCCG AGGAGGACCGACGCGCCCCCAGGCCCCCGCTCATCGTCTCCCACACCCGCCGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10622#0      TCCGACTGGAGCACGAGGACACTGAATGGACTGAAGGAGTAGAAAAATTAGCGACCCTTC 60
consensus_10622#1      ------------------------------------------------------------
                                                                                   

consensus_10622#0      CTTTTTACCTCCAGCGAAGTCCTCTCCGGCGCTGGCTTTCTCCTCCACGGGTCTAGGGTT 120
consensus_10622#1      ------------------------------------------------------------
                                                                                   

consensus_10622#0      CCGGCCACCGCCGCCGCCGCCGCACGGGGGAGAGAGAGTGAGAGGATGAGCGGGAGCGCG 180
consensus_10622#1      -------------------------------------------------GCGGGAGCGCG 11
                                                                        ***********

consensus_10622#0      TTCAACGCGTTCAAGTCGCGGGTGGCGGTGGCGTGGAGCCCCAAGCTGTACATCACGCTG 240
consensus_10622#1      TTCAAGGCGTTCAAGTCGCGGGTGGAGGTGGCGTGGAGCCCCAAGCTG------------ 59
                       ***** ******************* **********************            

consensus_10622#0      GTGCGGGGCCTCCCGGGGACGCGCCGCCTCCACCGCCGCACGCTCGAGGCCATGCGCCTC 300
consensus_10622#1      GTGCGGGGCCTCCCAGGTACGCGCCGCCTCCACCGCCACACGCTTGAGGCCATGAGCCTC 119
                       ************** ** ******************* ****** ********* *****

consensus_10622#0      CGCCGCTGCCACCGCACCGTCGAGCACCGCACCACCCCTTCCCTCCTCGGCATGCTCACC 360
consensus_10622#1      CGCCGCTGCCACCGCACCGTCGAGCACCGCACCACGCCCTCCCTGCTCGGCATGCTCACC 179
                       *********************************** ** ***** ***************

consensus_10622#0      CAGGTCAAGCGCCTCGTCGTCGTCGAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCC 420
consensus_10622#1      CAGGTCAAGTGCCTCGTCGTCGTCGAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCC 239
                       ********* **************************************************

consensus_10622#0      GAGGACGACCGCCGCGCGCCCAGGCCACCCCTCGTCGTCTCCCACCGCCCGCCCGCCGCT 480
consensus_10622#1      GAGGAGGACCGACGCGCCCCCAGGCCCCCGCTCATCGTCTCCCA-----CACCCGCCGC- 293
                       ***** ***** ***** ******** ** *** **********     * ******** 

consensus_10622#0      GCCACGCCCACGCCCACGCCCACTGCGGGCCACTAGACTCACCAGTGGGCACCAGAAGCC 540
consensus_10622#1      ------------------------------------------------------------
                                                                                   

consensus_10622#0      ATTCTTCAATCAAGACTGGCTACTATATGCTTGAGACTATCTTTGCTCTCAATGATGATT 600
consensus_10622#1      ------------------------------------------------------------
                                                                                   

consensus_10622#0      TCATTGAACCTGTTCTGGTAACTCATTATTTACCAAAGTGGTCTCATCAAGCTTGTACCT 660
consensus_10622#1      ------------------------------------------------------------
                                                                                   

consensus_10622#0      TTGAAGACCGTAATGTCTTGGCCTTTGTAGTCAGTTAAATGAATAAAGCCTTTTTGATAT 720
consensus_10622#1      ------------------------------------------------------------
                                                                                   

consensus_10622#0      GTTGGTGCCACTGTCCAATCTTGTCAGTTACTGCTTCCTCTATCATCGAAATTATTGCTG 780
consensus_10622#1      ------------------------------------------------------------
                                                                                   

consensus_10622#0      CAAAATTCACATTCCATTTATGGTTTATCACTTCATTTCAACTA 824
consensus_10622#1      --------------------------------------------
                                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)