These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10622#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 824 fasta sequence [TCCGACTGGAGCACGAGGACACTGAATGGACTGAAGGAGTAGAAAAATTAGCGACCCTTCCTTTTTACCTCCAGCGAAGTCCTCTCCGGCGCTGGCTTTCTCCTCCACGGGTCTAGGGTTCCGGCCACCGCCGCCGCCGCCGCACGGGGGAGAGAGAGTGAGAGGATGAGCGGGAGCGCGTTCAACGCGTTCAAGTCGCGGGTGGCGGTGGCGTGGAGCCCCAAGCTGTACATCACGCT-GGTGCGGGGCCTCCCGGGGACGCGCCGCCTCCACCGCCGCACGCTCGAGGCCATGCGCCTCCGCCGCTGCCACCGCACCGTCGAGCACCGCACCACCCCTTCCCTCCTCGGCATGCTCACCCAGGTCAAGCGCCTCGTCGTCGTCGAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCCGAGGACGACCGCCGCGCGCCCAGGCCACCCCTCGTCGTCTCCCACCGCCCGCCCGCCGCTGCCACGCCCACGCCCACGCCCACTGCGGGCCACTAGACTCACCAGTGGGCACCAGAAGCCATTCTTCAATCAAGACTGGCTACTATATGCTTGAGACTATCTTTGCTCTCAATGATGATTTCATTGAACCTGTTCTGGTAACTCATTATTTACCAAAGTGGTCTCATCAAGCTTGTACCTTTGAAGACCGTAATGTCTTGGCCTTTGTAGTCAGTTAAATGAATAAAGCCTTTTTGATATGTTGGTGCCACT-GTCCAATCTT-GTCAGTTACTGCTTCCTCTATCATCGAAATTATTGCTGCAAAATTCACATTCCATTTATGGTTTATCACTTCATTTCAACTA] [+] EMBL CF340039 [TCCGACTGGAGCACGAGGACACTGAATGGACTGAAGGAGTAGAAAAATTAGCGACCCTTCCTTTTTACCTCCAGCGAAGTCCTCTCCGGCGCTGGCTTTCTCCTCCACGGGTCTAGGGTTCCGGCCACCGCCGCCGCCGCCGCACGGGGGAGAGAGAGTGAGAGGATGAGCGGGAGCGCGTTCAACGCGTTCAAGTCGCGGGTGGCGGTGGCGTGGAGCCCCAAGCTGTACATCACGCT GGTGCGGGGCCTCCCGGGGACGCGCCGCCTCCACCGCCGCACGCTCGAGGCCATGCGCCTCCGCCGCTGCCACCGCACCGTCGAGCACCGCACCACCCCTTCCCTCCTCGGCATGCTCACCCAGGTCAAGCGCCTCGTCGTCGTCGAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCCGAGGACGACCGCCGCGCGCCCAGGCCACCCCTCGTCGTCTCCCACCGCCCGCCCGCCGCTGCCACGCCCACGCCCACGCCCA ] [+] EMBL CF338622 [ GAATGGACTGAAGGAGTAGAAAAATTAGCGACCCTTCCTTTTTACCTCCAGCGAAGTCCTCTCCGGCGCTGGCTTTCTCCTCCACGGGTCTAGGGTTCCGGCCACCGCCGCCGCCGCCGCACGGGGGAGAGAGAGTGAGAGGATGAGCGGGAGCGCGTTCAACGCGTTCAAGTCGCGGGTGGCGGTGGCGTGGAGCCCCAAGCTGTACATCACGCT GGTGCGGGGCCTNCCGGGGACGCGCCGCCTCCACCGCCGCACGCTCGAGGCCATGCGCCTCCGCCGCTG ] [+] EMBL CF340699 [ TGAAGGAGTAGAAAAATTAGCGACCCTTCCTTTTTACCTCCAGCGAAGTCCTCTCCGGCGCTGGCTTTCTCCTCCACGGGTCTAGGGTTCCGGCCACCGCCGCCGCCGCCGCACGGGGGAGAGAGAGTGAGAGGATGAGCGGGAGCGCGTTCAACGCGTTC AGTCGCGGGTGGCGGTGGCGTGGAGCCCCAAGCTGTACATCACGCTGGGTGCGGNGCCTCCCGGGGACGCGCCGCCTCCACCGCCGCACGCTCGAGGCCATGCGCCTCCGCCGCTGCCACCGCACCGTCGAGCACCGCACCACCCCTTCCCTCCTCGGCATGCTCACCCAGGTCAAGCGCCTCGTCGTCGTCGAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCCGAGGACGACCGCCGCGCGCCCAGGCCACCCCTCGTCGTCTCCCACCGCCCGCCCGCCGTTGCCACGCCCACGCCCACGCCCACTGCGGGCCACTAGACTCACCAGTGGGCACCAGAAGCCATTCTTCAATCAAGACTGGC ] [+] EMBL CF340458 [ TGAAGGAGTAGAAAAATTAGCGACCCTTCCTTTTTACCTCCAGCGAAGTCCTCTCCGGCGCTGGCTTTCTCCTCCACGGGTCTAGGGTTCCGGCCACCGCCGCCGCCGCCGCACGGGGGAGAGAGAGTGAGAGGATGAGCGGGAGCGCGTTCAACGCGTTCAAGTCGCGGGTGGCGGTGGCGTGGAGCCCCAAGCTGTACATCA ] [+] EMBL AK063315 [ CCTCCACGGGTCTAGGGTTCCGGCCACCGCCGCCGCCGCCGCACGGGGGAGAGAGAGTGAGAGGATGAGCGGGAGCGCGTTCAACGCGTTCAAGTCGCGGGTGGCGGTGGCGTGGAGCCCCAAGCTGTACATCACGCT GGTGCGGGGCCTCCCGGGGACGCGCCGCCTCCACCGCCGCACGCTCGAGGCCATGCGCCTCCGCCGCTGCCACCGCACCGTCGAGCACCGCACCACCCCTTCCCTCCTCGGCATGCTCACCCAGGTCAAGCGCCTCGTCGTCGTCGAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCCGAGGACGACCGCCGCGCGCCCAGGCCACCCCTCGTCGTCTCCCACCGCCCGCCCGCCGCTGCCACGCCCACGCCCACGCCCACTGCGGGCCACTAGACTCACCAGTGGGCACCAGAAGCCATTCTTCAATAAAGACTGGCTACTATATGCTTGAGACTATCTTTGCTCTCAATGATGATTTCATTGAACCTGTTCTGGTAACTCATTATTTACCAAAGTGGTCTCATCAAGCTTGTACCTTTGAAGACCGTAATGTCTTGGCCTTTGTAGTCAGTTAAATGAATAAAGCCTTTTTGATATGTTGGTGCCACT GTCCAATCTT GTCAGTTACTGCTTCCTCTATCATCGAAATTATTGCTGCAAAATTCACATTCCATTTATGGTTTATCACTTCATTTCAACTA] [+] EMBL AU162251 [ AGGCAGGCCGAGGACGACCGCCGCGCGCCCAGGCCACCCCTCGTCGTCTCCCACCGCCCGCCCGCCGCTGCCACGCCCACGCCCACGCCCACTGCGGGCCACTAGACTCACCAGTGGGCACCAGAAGCCATTCTTCAATCAAGACTGGCTACTATATGCTTGAGACTATCTTTGCTCTCAATGATGATTTCATTGAACCTGTTCTGGTAACTCATTATTTACCAAAGTGGTCTCATCAAGCTTGTACCTTTGAAGACCGTAATGTCTTGGCCTTTGTAGTCAGTTAAATGAATAAAGCCTTTTTGATATGTTGGTGCCACTGGTCCAATCTTGGTCAGTTACTGCTTCCTCTATCATCGAAATTATTGCTGCAAAATTCACATTCC ] consensusID : consensus_10622#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [GCGGGAGCGCGTTCAAGGCGTTCAAGTCGCGGGTGGAGGTGGCGTGGAGCCCCAAGCTGGTGCGGGGCCTCCCAGGTACGCGCCGCCTCCACCGCCACACGCTTGAGGCCATGAGCCTCCGCCGCTGCCACCGCACCGTCGAGCACCGCACCACGCCCTCCCTGCTCGGCATGCTCACCCAGGTCAAGTGCCTCGTCGTCGTCGAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCCGAGGAGGACCGACGCGCCCCCAGGCCCCCGCTCATCGTCTCCCACACCCGCCGC] [+] EMBL CA756244 [GCGGGAGCGCGTTCAAGGCGTTCAAGTCGCGGGTGGAGGTGGCGTGGAGCCCCAAGCTGGTGCGGGGCCTCCCAGGTACGCGCCGCCTCCACCGCCACACGCTTGAGGCCATGAGCCTCCGCCGCTGCCACCGCACCGTCGAGCACCGCACCACGCCCTCCCTGCTCGGCATGCTCACCCAGGTCAAGTGCCTCGTCGTCGTCGAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCCGAGGAGGACCGACGCGCCCCCAGGCCCCCGCTCATCGTCTCCCACACCCGCCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10622#0 TCCGACTGGAGCACGAGGACACTGAATGGACTGAAGGAGTAGAAAAATTAGCGACCCTTC 60 consensus_10622#1 ------------------------------------------------------------ consensus_10622#0 CTTTTTACCTCCAGCGAAGTCCTCTCCGGCGCTGGCTTTCTCCTCCACGGGTCTAGGGTT 120 consensus_10622#1 ------------------------------------------------------------ consensus_10622#0 CCGGCCACCGCCGCCGCCGCCGCACGGGGGAGAGAGAGTGAGAGGATGAGCGGGAGCGCG 180 consensus_10622#1 -------------------------------------------------GCGGGAGCGCG 11 *********** consensus_10622#0 TTCAACGCGTTCAAGTCGCGGGTGGCGGTGGCGTGGAGCCCCAAGCTGTACATCACGCTG 240 consensus_10622#1 TTCAAGGCGTTCAAGTCGCGGGTGGAGGTGGCGTGGAGCCCCAAGCTG------------ 59 ***** ******************* ********************** consensus_10622#0 GTGCGGGGCCTCCCGGGGACGCGCCGCCTCCACCGCCGCACGCTCGAGGCCATGCGCCTC 300 consensus_10622#1 GTGCGGGGCCTCCCAGGTACGCGCCGCCTCCACCGCCACACGCTTGAGGCCATGAGCCTC 119 ************** ** ******************* ****** ********* ***** consensus_10622#0 CGCCGCTGCCACCGCACCGTCGAGCACCGCACCACCCCTTCCCTCCTCGGCATGCTCACC 360 consensus_10622#1 CGCCGCTGCCACCGCACCGTCGAGCACCGCACCACGCCCTCCCTGCTCGGCATGCTCACC 179 *********************************** ** ***** *************** consensus_10622#0 CAGGTCAAGCGCCTCGTCGTCGTCGAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCC 420 consensus_10622#1 CAGGTCAAGTGCCTCGTCGTCGTCGAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCC 239 ********* ************************************************** consensus_10622#0 GAGGACGACCGCCGCGCGCCCAGGCCACCCCTCGTCGTCTCCCACCGCCCGCCCGCCGCT 480 consensus_10622#1 GAGGAGGACCGACGCGCCCCCAGGCCCCCGCTCATCGTCTCCCA-----CACCCGCCGC- 293 ***** ***** ***** ******** ** *** ********** * ******** consensus_10622#0 GCCACGCCCACGCCCACGCCCACTGCGGGCCACTAGACTCACCAGTGGGCACCAGAAGCC 540 consensus_10622#1 ------------------------------------------------------------ consensus_10622#0 ATTCTTCAATCAAGACTGGCTACTATATGCTTGAGACTATCTTTGCTCTCAATGATGATT 600 consensus_10622#1 ------------------------------------------------------------ consensus_10622#0 TCATTGAACCTGTTCTGGTAACTCATTATTTACCAAAGTGGTCTCATCAAGCTTGTACCT 660 consensus_10622#1 ------------------------------------------------------------ consensus_10622#0 TTGAAGACCGTAATGTCTTGGCCTTTGTAGTCAGTTAAATGAATAAAGCCTTTTTGATAT 720 consensus_10622#1 ------------------------------------------------------------ consensus_10622#0 GTTGGTGCCACTGTCCAATCTTGTCAGTTACTGCTTCCTCTATCATCGAAATTATTGCTG 780 consensus_10622#1 ------------------------------------------------------------ consensus_10622#0 CAAAATTCACATTCCATTTATGGTTTATCACTTCATTTCAACTA 824 consensus_10622#1 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||