cluster # 10624

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Oryza sativa
cluster # 10624 cluster # 10624 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10624#0 length = 821 sequences # 5

consensus_10624#1 length = 335 sequences # 2

consensusID : consensus_10624#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 821
fasta sequence

                              [ACTAGAGTAACCTTGCATTTCAATCGCTTAAAAAAAGCTTCTCATCCCGTGAAAATTGTATTCTGAGAGAACAAAATCATTGTAAAATGAAAACTATGATCACATGCAGTAGTATCACAAAAGTTGCATGCCAACAACTACAAATGCTACAAAAGAATGGAAATTTACACATTTCTAATGTCTCAATAATACCTACAACTACTCAGCCAGGCCTTCAACGAAGATCGATGGCAACGCTGGATCGATAATCAGGTCCTTGCCTTCTGTTTATCTAGGTATAACATTAAGAATCCTTCCAGGCACATAAATTCTCTTCCTGATGCCCTTCCCAGTCAAATATTTGGAGAGTTTCTCGTCGGAGGCTGCTATTTGGAATGCATCATCCTCAGAGCACTCTTTGTCGACAAGAATTGTACCCCTGGTCTTCCCATTGATTTGCACTGGAAGCACGAGCTTTGATTCTTTCAAGTACTCACTTTTTCCCTCTGGAAATTGCTCGTGGGCCAATGATCTTGAGTTCCCAAGGCGAAACCAAAGCTCCTCAGCCATGTGTGGTGCAAAAGGCGAAAGCAACAGAATAAAGGATTCAATAACTGACTTTGGTTGGGTGTCCCACTTGTATGCAGCATTCAC-AAATTCCATCATTG-CGGAATTTGCAGTGTTAAATCTTGTTTCTTGAATTTCCTCTGTGACTCTTGCAATGCATTTGTGAAGAACTCGGAGCTGATCCAAGGTTGGTTCCTCATCAGTAACCGTAGTTCCAACTCCATATGATCCATCTGGTAATGGTGTACCAACTACGAGTCTCCATGTCCTTCCTA]

[+] EMBL CB621536             [ACTAGAGTAACCTTGCATTTCAATCGCTTAAAAAAAGCTTCTCATCCCGTGAAAATTGTATTCTGAGAGAACAAAATCATTGTAAAATGAAAACTATGATCACATGCAGTAGTATCACAAAAGTTGCATGCCAACAACTACAAATGCTACAAAAGAATGGAAATTTACACATTTCTAATGTCTCAATAATACCTACAACTACTCAGCCAGGCCTTCAACGAAGATCGATGGCAACGCTGGATCGATAATCAGGTCCTTGCCTTCTGTTTATCTAGGTATAACATTAAGAATCCTTCCAGGCACATAAATTCTCTTCCTGATGCCCTTCCCAGTCAAATATTTGGAGAGTTTCTCGTCGGAGGCTGCTATTTGGAATGCATCATCCTCAGAGCACTCTTTGTCGACAAGAATTGTACCCCTGGTCTTCCCATTGATTTGCACTGGAAGCACGAGCTTTGATTCTTTCAAGTACTCACTTTTTCCCTCTGGAAATTGCTCGTGGGCCAATGATCTTGAGTTCCCAAGGCGAAACCAAAGCTCCTCAGCCATGTGTGGTGCAAAAGGCGAAAGCAACAGAATAAAGGATTCAATAACTGACTTTGGTTGGGTGTCCCACTTGTATGCAGCATTCAC AAA                                                                                                                                                                                          ]
[+] EMBL CF337209             [           ttttttTTTCAATCGCTTAAAAAAAGCTTCTCATCCCGTGAAAATTGTATTCTGAGAGAACAAAATCATTGTAAAATGAAAACTATGATCACATGCAGTAGTATCACAAAAGTTGCATGCCAACAACTACAAATGCTACAAAAGAATGGAAATTTACACATTTCTAATGTCTCAATAATACCTACAACTACTCAGCCAGGCCTTCAACGAAGATCGATGGCAACGCTGGATCGATAATCAGGTCCTTGCCTTCTGTTTATCTAGGTATAACATTAAGAATCCTTCCAGGCACATAAATTCTCTTCCTGATGCCCTTCCCAGTCAAATATTTGGAGAGTTTCTCGTCGGAGGCTGCTATTTGGAATGCATCATCCTCAGAGCACTCTTTGTCGACAAGAATTGTACCCCTGGTCTTCCCATTGATTTGCACTGGAAGCACGAGCTTTGATTCTTTCAAGTACTCACTTTTTCCCTCTGGAAATTGCTCGTGGGCCAATGATCTTGAGTTCCCAAGGCGAAACC                                                                                                                                                                                                                                                                                                  ]
[-] EMBL AU032484             [                                                                            tttTTTTAAAATGAAAACTATGATCACATGCAGTAGTATCACAAAAGTTGCATGCCAACAACTACAAATGCTACAAAAGAATGGAAATTTACACATTTCTAATGTCTCAATAATACCTACAACTACTCAGCCAGGCCTTCAACGAAGATCGATGGCAACGCTGGATCGATAATCAGGTCCTTGCCTTCTGTTTATCTAGGTATAACATTAAGAATCCTTCCAGGCACATAAATTCTCTTCCTGATGCCCTTCCCAGTCAAATATTTGGAGAGTTTCTCGTCGGAGGCTGCTATTTGGAATGCATCATCCTCAGAGCACTCTTTGTCGACAAGAATTGTACCCCTGGTCTTCCCATTGATTTGCACTGGAAGCACGAGCTTTGATTCTTTCAAGTACTCACTTTTTCCCTCTGGAAATTGCTCGTGGGCCAATGATCNTGAGTTCCCAAGGCGAAACCAAAGCTCCTCAGCCATGTGTGGTGCAAAAGGCGAAA NAACAGAATAAAGGATTCAATAACTGACTTTGGNTGGGTGTCCCACTTGGATGCAGCATTCACAAAATTCCATCATTGACGGAAT                                                                                                                                                                        ]
[-] EMBL AU093406             [                                                                            tttTTTTAAAATGAAAACTATGATCACATGCAGTAGTATCACAAAAGTTGCATGCCAACAACTACAAATGCTACAAAAGAATGGAAATTTACACATTTCTAATGTCTCAATAATACCTACAACTACTCAGCCAGGCCTTCAACGAAGATCGATGGCAACGCTGGATCGATAATCAGGTCCTTGCCTTCTGTTTATCTAGGTATAACATTAAGAATCCTTCCAGGCACATAAATTCTCTTCCTGATGCCCTTCCCAGTCAAATATTTGGAGAGTTTCTCGTCGGAGGCTGCTATTTGGAATGCATCATCCTCAGAGCACTCTTTGTCGACAAGAATTGTACCCCNGGTCTTCCCATTGATTTGCACTGGAAGCACGAGCTTTGATTCTTTCAAGTACTCACTTTTTCCCNCTGGAAATTGCTCGTGGGCCAATGATCTTGAGTTCCCAAGGCGAAACCAAAGCTCCTCAGCCATGTGTGGTGCAAAAGGCGAAAGCAACAGAATAAAGGATTCAATAANTGACTTTGGTTGGGTGTCCCACTTGTATGCAGCATTNAC AAATTC                                                                                                                                                                                       ]
[+] EMBL CB676414             [                                                                                          AAACTATGATCACATGCAGTAGTATCACAAAAGTTGCATGCCAACAACTACAAATGCTACAAAAGAATGGAAATTTACACATTTCTAATGTCTCAATAATACCTACAACTACTCAGCCAGGCCTTCAACGAAGATCGATGGCAACGCTGGATCGATAATCAGGTCCTTGCCTTCTGTTTATCTAGGTATAACATTAAGAATCCTTCCAGGCACATAAATTCTCTTCCTGATGCCCTTCCCAGTCAAATATTTGGAGAGTTTCTCGTCGGAGGCTGCTATTTGGAATGCATCATCCTCAGAGCACTCTTTGTCGACAAGAATTGTACCCCTGGTCTTCCCATTGATTTGCACTGGAAGCACGAGCTTTGATTCTTTCAAGTACTCACTTTTTCCCTCTGGAAATTGCTCGTGGGCCAATGATCTTGAGTTCCCAAGGCGAAACCAAAGCTCCTCAGCCATGTGTGGTGCAAAAGGCGAAAGCAACAGAATAAAGGATTCAATAACTGACTTTGGTTGGGTGTCCCACTTGTATGCAGCATTCAC AAATTCCATCATTG CAGAAATTGCAGTGTTAAATCTTGTTTCTTGAATTTCCTCTGTGACTCTTGCAATGCATTTGTGAAGAACTCGGAGCTGATCCAAGGTTGGTTCCTCATCAGTAACCGTAGTTCCAACTCCATATGATCCATCTGGTAATGGTGTACCAACTACGAGTCTCCATGTCCTTCCTA]




>consensus_10624#0
ACTAGAGTAACCTTGCATTTCAATCGCTTAAAAAAAGCTTCTCATCCCGTGAAAATTGTA
TTCTGAGAGAACAAAATCATTGTAAAATGAAAACTATGATCACATGCAGTAGTATCACAA
AAGTTGCATGCCAACAACTACAAATGCTACAAAAGAATGGAAATTTACACATTTCTAATG
TCTCAATAATACCTACAACTACTCAGCCAGGCCTTCAACGAAGATCGATGGCAACGCTGG
ATCGATAATCAGGTCCTTGCCTTCTGTTTATCTAGGTATAACATTAAGAATCCTTCCAGG
CACATAAATTCTCTTCCTGATGCCCTTCCCAGTCAAATATTTGGAGAGTTTCTCGTCGGA
GGCTGCTATTTGGAATGCATCATCCTCAGAGCACTCTTTGTCGACAAGAATTGTACCCCT
GGTCTTCCCATTGATTTGCACTGGAAGCACGAGCTTTGATTCTTTCAAGTACTCACTTTT
TCCCTCTGGAAATTGCTCGTGGGCCAATGATCTTGAGTTCCCAAGGCGAAACCAAAGCTC
CTCAGCCATGTGTGGTGCAAAAGGCGAAAGCAACAGAATAAAGGATTCAATAACTGACTT
TGGTTGGGTGTCCCACTTGTATGCAGCATTCACAAATTCCATCATTGCGGAATTTGCAGT
GTTAAATCTTGTTTCTTGAATTTCCTCTGTGACTCTTGCAATGCATTTGTGAAGAACTCG
GAGCTGATCCAAGGTTGGTTCCTCATCAGTAACCGTAGTTCCAACTCCATATGATCCATC
TGGTAATGGTGTACCAACTACGAGTCTCCATGTCCTTCCTA

consensusID : consensus_10624#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 335
fasta sequence

                              [TTTTGGCCGACAAAGAATTGTACCCCTGGGCCTTCCCCATTTGATTTGNACTGNAAGCACGAGCTTTGATTCTTTCAAGTACTAACTTTTTCCCTCTGGAAATTGCTCGTGGGCCAATGATCTTGAGTNCCCAAGGCGAAACCAAAGCTCCTCAGCCATGTGTGGTGCAAAAGGCGAAAGCAACAGAATAAAGGATTCAATAACTGACTTTGGTTGGGTGTCCCACTTGTATGCAGCATTCACAAATTCCATCATTGCAGAAATTGCAGTGTTAAATCTTGTTCCTTGGATCAGCTCCGAGTTCTTCACAAATGCATTGCAAGAGTCACAGAGGA]

[-] EMBL OSS10429A            [TTTTGGCCGACAAAGAATTGTACCCCTGGGCCTTCCCCATTTGATTTGNACTGNAAGCACGAGCTTTGATTCTTTCAAGTACTAACTTTTTCCCTCTGGAAATTGCTCGTGGGCCAATGATCTTGAGTNCCCAAGGCGAAACCAAAGCTCCTCAGCCATGTGTGGTGCAAAAGGCGAAAGCAACAGAATAAAGGATTCAATAACTGACTTTGGTTGGGTGTCCCACTTGTATGCAGCATTCACAAATTCCATCATTGCAGAAATTGCAGTGTTAAATCTTGTTCCTTGGATCAGCTCCGAGTTCTTCACAAATGCATTGCAAGAGTCACAGAGGA]
[-] EMBL OSS10623A            [                                                                                                 GGAAANTNCCCNTGGGCCAATGNNCCTGAGNTCCCAAGGCGAAACCAAAGCTCCTCAACCATGTGTGGTGCAAAAGGCGAAAGCAACAGAATAAAGGANTCAATAACTGACTTTGGTTGGGTGTCCCACTTGTATGCAGCATTCACAAATTCCATCATTGCAGAAATTGCAGTGTTAAATCTTGTTCCTTGGATCAGCTCCGAGTTCTTCANAAATGCATTGCAAGAGTNACAGAGGA]




>consensus_10624#1
TTTTGGCCGACAAAGAATTGTACCCCTGGGCCTTCCCCATTTGATTTGNACTGNAAGCAC
GAGCTTTGATTCTTTCAAGTACTAACTTTTTCCCTCTGGAAATTGCTCGTGGGCCAATGA
TCTTGAGTNCCCAAGGCGAAACCAAAGCTCCTCAGCCATGTGTGGTGCAAAAGGCGAAAG
CAACAGAATAAAGGATTCAATAACTGACTTTGGTTGGGTGTCCCACTTGTATGCAGCATT
CACAAATTCCATCATTGCAGAAATTGCAGTGTTAAATCTTGTTCCTTGGATCAGCTCCGA
GTTCTTCACAAATGCATTGCAAGAGTCACAGAGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10624#0      ACTAGAGTAACCTTGCATTTCAATCGCTTAAAAAAAGCTTCTCATCCCGTGAAAATTGTA 60
consensus_10624#1      ------------------------------------------------------------
                                                                                   

consensus_10624#0      TTCTGAGAGAACAAAATCATTGTAAAATGAAAACTATGATCACATGCAGTAGTATCACAA 120
consensus_10624#1      ------------------------------------------------------------
                                                                                   

consensus_10624#0      AAGTTGCATGCCAACAACTACAAATGCTACAAAAGAATGGAAATTTACACATTTCTAATG 180
consensus_10624#1      ------------------------------------------------------------
                                                                                   

consensus_10624#0      TCTCAATAATACCTACAACTACTCAGCCAGGCCTTCAACGAAGATCGATGGCAACGCTGG 240
consensus_10624#1      ------------------------------------------------------------
                                                                                   

consensus_10624#0      ATCGATAATCAGGTCCTTGCCTTCTGTTTATCTAGGTATAACATTAAGAATCCTTCCAGG 300
consensus_10624#1      ------------------------------------------------------------
                                                                                   

consensus_10624#0      CACATAAATTCTCTTCCTGATGCCCTTCCCAGTCAAATATTTGGAGAGTTTCTCGTCGGA 360
consensus_10624#1      ------------------------------------------------------------
                                                                                   

consensus_10624#0      GGCTGCTATTTGGAATGCATCATCCTCAGAGCACTCTTTGTCGACAA-GAATTGTACCCC 419
consensus_10624#1      ----------------------------------TTTTGGCCGACAAAGAATTGTACCCC 26
                                                         * ** * ****** ************

consensus_10624#0      TGGTCTTCCCA---TTGATTTGCACTGGAAGCACGAGCTTTGATTCTTTCAAGTACTCAC 476
consensus_10624#1      TGGGCCTTCCCCATTTGATTTGNACTGNAAGCACGAGCTTTGATTCTTTCAAGTACTAAC 86
                       *** * * **    ******** **** ***************************** **

consensus_10624#0      TTTTTCCCTCTGGAAATTGCTCGTGGGCCAATGATCTTGAGTTCCCAAGGCGAAACCAAA 536
consensus_10624#1      TTTTTCCCTCTGGAAATTGCTCGTGGGCCAATGATCTTGAGTNCCCAAGGCGAAACCAAA 146
                       ****************************************** *****************

consensus_10624#0      GCTCCTCAGCCATGTGTGGTGCAAAAGGCGAAAGCAACAGAATAAAGGATTCAATAACTG 596
consensus_10624#1      GCTCCTCAGCCATGTGTGGTGCAAAAGGCGAAAGCAACAGAATAAAGGATTCAATAACTG 206
                       ************************************************************

consensus_10624#0      ACTTTGGTTGGGTGTCCCACTTGTATGCAGCATTCACAAATTCCATCATTGCGGAATTTG 656
consensus_10624#1      ACTTTGGTTGGGTGTCCCACTTGTATGCAGCATTCACAAATTCCATCATTGCAGAAATTG 266
                       **************************************************** *** ***

consensus_10624#0      CAGTGTTAAATCTTGTTTCTTGAATTTCCTCTGTGACTCTTGCAA-TGCATTTGTGAAGA 715
consensus_10624#1      CAGTGTTAAATCTTGTTCCTTGGATCAGCTCCGAGTTCTTCACAAATGCATT-GCAAGAG 325
                       ***************** **** **   *** * *    *  *** ****** *  *   

consensus_10624#0      ACTCGGAGCTGATCCAAGGTTGGTTCCTCATCAGTAACCGTAGTTCCAACTCCATATGAT 775
consensus_10624#1      TCACAGAGGA-------------------------------------------------- 335
                        * * ***                                                    

consensus_10624#0      CCATCTGGTAATGGTGTACCAACTACGAGTCTCCATGTCCTTCCTA 821
consensus_10624#1      ----------------------------------------------