cluster # 1063

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Oryza sativa
cluster # 1063 cluster # 1063 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1063#0 length = 1271 sequences # 1

consensus_1063#1 length = 661 sequences # 1

consensusID : consensus_1063#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1271
fasta sequence

                              [ATATACTGCCCTACATTGGATAATGGAAAGCCAGAAGATCTCACACACTTCCAGAAGCATTGGGTGAAAGGCGAACCCGTAATTGTTCAACAGGTTCTCAAGAAAATGTCATGTTTGAGTTGGGAGCCACCAGATATGTGGTCTAAAGTACATGGCACCGGCACTAGTCCTGAGATGAAAAACGTGAAGGCTATTGATTGTTTATCTTGCTGTGAGGTCGAGATATGCACTCAAGACTTCTTCAATGGGTATTATGAAGGTCGGATGTATCAAAATCTATGGCCTGAAATGCTTAAATTGAAGGACTGGCCTACATCAAATCATTTTGAAGAGCTTTTGCCTTCCCATGGAGTTAAATACATGAATTCTTTACCTTTTCAACCATACACAAACTTGAAGTCTGGTTTGCTGAATGTCTCAACCTTGCTTCCTGATGACATCTTAAAGCTTGACATGGGCCCAAAATCATATATAGCTTATGGCTATGCACAGGAACTTGGTAGAGGAGATTCTGTTACAAAGCTTCACTGCGATTTGTCTGATGCAGTTAACGTTTTGATGCATACTGCTGAAGTTGACCCTTCCGAGGAACAAATAGATGCAATAAAAAGTTTGAAAAGAAGACATACAGCGCAAAATGAAAAGGAGTGTTCTGGGAATGCAGACGGAAATTATACATCTCCTAAAATCTGTGGGGATGCAAATGAGTTGTCCTGTCCTATAAACAGTGAGACCAACAAGGGAGGTGCTTTATGGGATATTTTTAGGAGGGAAGATGTTCCAAAACTGAAATTGTATCTCGACAAGCATTCTAAGGAATTTCGCCATATATACTGTTCTGCAGTTCAAAAGGTATGTAACCCTGTACATGATGAAACATTTTATCTAACAGAAGAACACAAGAGAAAACTCAAGGAGGAGCATGGAATTGAGCCTTGGACATTTGTACAAAAACTTGGGGAGGCAGTATTCATTCCTGCTGGGTGTCCTCATCAAGTACGGAATCTTAAGTCCTGCACCAAGATTGCCTTGGATTTTGTATCACCCGAGAATGTTAAGGAGTGTCTCAGCTTAACCGAGGACTTCCGAAGACTTCCTAAGAACCACAGGGCCAAAGAAGACAAATTAGAGCTAGGTGTGGTTCAAAATGGACCCAAGCCCACATACCCTCGAGAAACTATTCTAAACTCTCAATGGGACATCTTGTTGTTTGCATATCATCCAAATAGTTATGACAAAGTTTAAGAAGATAGATTAATATGTGATAATCA]

[+] EMBL AK059445             [ATATACTGCCCTACATTGGATAATGGAAAGCCAGAAGATCTCACACACTTCCAGAAGCATTGGGTGAAAGGCGAACCCGTAATTGTTCAACAGGTTCTCAAGAAAATGTCATGTTTGAGTTGGGAGCCACCAGATATGTGGTCTAAAGTACATGGCACCGGCACTAGTCCTGAGATGAAAAACGTGAAGGCTATTGATTGTTTATCTTGCTGTGAGGTCGAGATATGCACTCAAGACTTCTTCAATGGGTATTATGAAGGTCGGATGTATCAAAATCTATGGCCTGAAATGCTTAAATTGAAGGACTGGCCTACATCAAATCATTTTGAAGAGCTTTTGCCTTCCCATGGAGTTAAATACATGAATTCTTTACCTTTTCAACCATACACAAACTTGAAGTCTGGTTTGCTGAATGTCTCAACCTTGCTTCCTGATGACATCTTAAAGCTTGACATGGGCCCAAAATCATATATAGCTTATGGCTATGCACAGGAACTTGGTAGAGGAGATTCTGTTACAAAGCTTCACTGCGATTTGTCTGATGCAGTTAACGTTTTGATGCATACTGCTGAAGTTGACCCTTCCGAGGAACAAATAGATGCAATAAAAAGTTTGAAAAGAAGACATACAGCGCAAAATGAAAAGGAGTGTTCTGGGAATGCAGACGGAAATTATACATCTCCTAAAATCTGTGGGGATGCAAATGAGTTGTCCTGTCCTATAAACAGTGAGACCAACAAGGGAGGTGCTTTATGGGATATTTTTAGGAGGGAAGATGTTCCAAAACTGAAATTGTATCTCGACAAGCATTCTAAGGAATTTCGCCATATATACTGTTCTGCAGTTCAAAAGGTATGTAACCCTGTACATGATGAAACATTTTATCTAACAGAAGAACACAAGAGAAAACTCAAGGAGGAGCATGGAATTGAGCCTTGGACATTTGTACAAAAACTTGGGGAGGCAGTATTCATTCCTGCTGGGTGTCCTCATCAAGTACGGAATCTTAAGTCCTGCACCAAGATTGCCTTGGATTTTGTATCACCCGAGAATGTTAAGGAGTGTCTCAGCTTAACCGAGGACTTCCGAAGACTTCCTAAGAACCACAGGGCCAAAGAAGACAAATTAGAGCTAGGTGTGGTTCAAAATGGACCCAAGCCCACATACCCTCGAGAAACTATTCTAAACTCTCAATGGGACATCTTGTTGTTTGCATATCATCCAAATAGTTATGACAAAGTTTAAGAAGATAGATTAATATGTGATAATCA]




>consensus_1063#0
ATATACTGCCCTACATTGGATAATGGAAAGCCAGAAGATCTCACACACTTCCAGAAGCAT
TGGGTGAAAGGCGAACCCGTAATTGTTCAACAGGTTCTCAAGAAAATGTCATGTTTGAGT
TGGGAGCCACCAGATATGTGGTCTAAAGTACATGGCACCGGCACTAGTCCTGAGATGAAA
AACGTGAAGGCTATTGATTGTTTATCTTGCTGTGAGGTCGAGATATGCACTCAAGACTTC
TTCAATGGGTATTATGAAGGTCGGATGTATCAAAATCTATGGCCTGAAATGCTTAAATTG
AAGGACTGGCCTACATCAAATCATTTTGAAGAGCTTTTGCCTTCCCATGGAGTTAAATAC
ATGAATTCTTTACCTTTTCAACCATACACAAACTTGAAGTCTGGTTTGCTGAATGTCTCA
ACCTTGCTTCCTGATGACATCTTAAAGCTTGACATGGGCCCAAAATCATATATAGCTTAT
GGCTATGCACAGGAACTTGGTAGAGGAGATTCTGTTACAAAGCTTCACTGCGATTTGTCT
GATGCAGTTAACGTTTTGATGCATACTGCTGAAGTTGACCCTTCCGAGGAACAAATAGAT
GCAATAAAAAGTTTGAAAAGAAGACATACAGCGCAAAATGAAAAGGAGTGTTCTGGGAAT
GCAGACGGAAATTATACATCTCCTAAAATCTGTGGGGATGCAAATGAGTTGTCCTGTCCT
ATAAACAGTGAGACCAACAAGGGAGGTGCTTTATGGGATATTTTTAGGAGGGAAGATGTT
CCAAAACTGAAATTGTATCTCGACAAGCATTCTAAGGAATTTCGCCATATATACTGTTCT
GCAGTTCAAAAGGTATGTAACCCTGTACATGATGAAACATTTTATCTAACAGAAGAACAC
AAGAGAAAACTCAAGGAGGAGCATGGAATTGAGCCTTGGACATTTGTACAAAAACTTGGG
GAGGCAGTATTCATTCCTGCTGGGTGTCCTCATCAAGTACGGAATCTTAAGTCCTGCACC
AAGATTGCCTTGGATTTTGTATCACCCGAGAATGTTAAGGAGTGTCTCAGCTTAACCGAG
GACTTCCGAAGACTTCCTAAGAACCACAGGGCCAAAGAAGACAAATTAGAGCTAGGTGTG
GTTCAAAATGGACCCAAGCCCACATACCCTCGAGAAACTATTCTAAACTCTCAATGGGAC
ATCTTGTTGTTTGCATATCATCCAAATAGTTATGACAAAGTTTAAGAAGATAGATTAATA
TGTGATAATCA

consensusID : consensus_1063#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 661
fasta sequence

                              [TGGGATATTTTTAGGAGGGAAGATGTTCCAAAACTGAAATTGTATCTCGACAAGCATTCTAAGGAATTTCGCCATATATACTGTTCTGCAGTTCAAAAGGTATGTAACCCTGTACATGATGAAACATTTTATCTAACAGAAGAACACAAGAGAAAACTCAAGGAGGAGCATGGAATTGAGCCTTGGACATTTGTACAAAAACTTGGGGAGGCAGTATTCATTCCTGCTGGGTGTCCTCATCAAGTACGGAATCTTAAGTCCTGCACCAAGATTGCCTTGGATTTTGTATCACCCGAGAATGTTAAGGAGTGTCTCAGCTTAACCGAGGACTTCCGAAGACTTCCTAAGAACCACAGGGCCAAAGAAGACAAATTAGAGGTGAATAAGATGATAATCTATGCTATCGACCACAGCTTGAGGATTCTGAAAGAGCGTTTCCCCTCTCCGTCCGATTGATGACGATGGTTGCATTGACGTCGTCTTCAAATGGGGTTCCTACGAGAAAGCGGATTAGATTATATGCAGGCATGTAGAGTTAGAGATATTTGAGCTCAATAAATAAAGACTTTGNTGAGCAGNTTATGNTTTGTACTATGGGGGGGATTTTCGAATTAANTGGTCAATCCCTTAATGNGCTATAGTAGTGATCTAATGNGATGAT]

[+] EMBL CA766173             [TGGGATATTTTTAGGAGGGAAGATGTTCCAAAACTGAAATTGTATCTCGACAAGCATTCTAAGGAATTTCGCCATATATACTGTTCTGCAGTTCAAAAGGTATGTAACCCTGTACATGATGAAACATTTTATCTAACAGAAGAACACAAGAGAAAACTCAAGGAGGAGCATGGAATTGAGCCTTGGACATTTGTACAAAAACTTGGGGAGGCAGTATTCATTCCTGCTGGGTGTCCTCATCAAGTACGGAATCTTAAGTCCTGCACCAAGATTGCCTTGGATTTTGTATCACCCGAGAATGTTAAGGAGTGTCTCAGCTTAACCGAGGACTTCCGAAGACTTCCTAAGAACCACAGGGCCAAAGAAGACAAATTAGAGGTGAATAAGATGATAATCTATGCTATCGACCACAGCTTGAGGATTCTGAAAGAGCGTTTCCCCTCTCCGTCCGATTGATGACGATGGTTGCATTGACGTCGTCTTCAAATGGGGTTCCTACGAGAAAGCGGATTAGATTATATGCAGGCATGTAGAGTTAGAGATATTTGAGCTCAATAAATAAAGACTTTGNTGAGCAGNTTATGNTTTGTACTATGGGGGGGATTTTCGAATTAANTGGTCAATCCCTTAATGNGCTATAGTAGTGATCTAATGNGATGAT]




>consensus_1063#1
TGGGATATTTTTAGGAGGGAAGATGTTCCAAAACTGAAATTGTATCTCGACAAGCATTCT
AAGGAATTTCGCCATATATACTGTTCTGCAGTTCAAAAGGTATGTAACCCTGTACATGAT
GAAACATTTTATCTAACAGAAGAACACAAGAGAAAACTCAAGGAGGAGCATGGAATTGAG
CCTTGGACATTTGTACAAAAACTTGGGGAGGCAGTATTCATTCCTGCTGGGTGTCCTCAT
CAAGTACGGAATCTTAAGTCCTGCACCAAGATTGCCTTGGATTTTGTATCACCCGAGAAT
GTTAAGGAGTGTCTCAGCTTAACCGAGGACTTCCGAAGACTTCCTAAGAACCACAGGGCC
AAAGAAGACAAATTAGAGGTGAATAAGATGATAATCTATGCTATCGACCACAGCTTGAGG
ATTCTGAAAGAGCGTTTCCCCTCTCCGTCCGATTGATGACGATGGTTGCATTGACGTCGT
CTTCAAATGGGGTTCCTACGAGAAAGCGGATTAGATTATATGCAGGCATGTAGAGTTAGA
GATATTTGAGCTCAATAAATAAAGACTTTGNTGAGCAGNTTATGNTTTGTACTATGGGGG
GGATTTTCGAATTAANTGGTCAATCCCTTAATGNGCTATAGTAGTGATCTAATGNGATGA
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1063#0      ATATACTGCCCTACATTGGATAATGGAAAGCCAGAAGATCTCACACACTTCCAGAAGCAT 60
consensus_1063#1      ------------------------------------------------------------
                                                                                  

consensus_1063#0      TGGGTGAAAGGCGAACCCGTAATTGTTCAACAGGTTCTCAAGAAAATGTCATGTTTGAGT 120
consensus_1063#1      ------------------------------------------------------------
                                                                                  

consensus_1063#0      TGGGAGCCACCAGATATGTGGTCTAAAGTACATGGCACCGGCACTAGTCCTGAGATGAAA 180
consensus_1063#1      ------------------------------------------------------------
                                                                                  

consensus_1063#0      AACGTGAAGGCTATTGATTGTTTATCTTGCTGTGAGGTCGAGATATGCACTCAAGACTTC 240
consensus_1063#1      ------------------------------------------------------------
                                                                                  

consensus_1063#0      TTCAATGGGTATTATGAAGGTCGGATGTATCAAAATCTATGGCCTGAAATGCTTAAATTG 300
consensus_1063#1      ------------------------------------------------------------
                                                                                  

consensus_1063#0      AAGGACTGGCCTACATCAAATCATTTTGAAGAGCTTTTGCCTTCCCATGGAGTTAAATAC 360
consensus_1063#1      ------------------------------------------------------------
                                                                                  

consensus_1063#0      ATGAATTCTTTACCTTTTCAACCATACACAAACTTGAAGTCTGGTTTGCTGAATGTCTCA 420
consensus_1063#1      ------------------------------------------------------------
                                                                                  

consensus_1063#0      ACCTTGCTTCCTGATGACATCTTAAAGCTTGACATGGGCCCAAAATCATATATAGCTTAT 480
consensus_1063#1      ------------------------------------------------------------
                                                                                  

consensus_1063#0      GGCTATGCACAGGAACTTGGTAGAGGAGATTCTGTTACAAAGCTTCACTGCGATTTGTCT 540
consensus_1063#1      ------------------------------------------------------------
                                                                                  

consensus_1063#0      GATGCAGTTAACGTTTTGATGCATACTGCTGAAGTTGACCCTTCCGAGGAACAAATAGAT 600
consensus_1063#1      ------------------------------------------------------------
                                                                                  

consensus_1063#0      GCAATAAAAAGTTTGAAAAGAAGACATACAGCGCAAAATGAAAAGGAGTGTTCTGGGAAT 660
consensus_1063#1      ------------------------------------------------------------
                                                                                  

consensus_1063#0      GCAGACGGAAATTATACATCTCCTAAAATCTGTGGGGATGCAAATGAGTTGTCCTGTCCT 720
consensus_1063#1      ------------------------------------------------------------
                                                                                  

consensus_1063#0      ATAAACAGTGAGACCAACAAGGGAGGTGCTTTATGGGATATTTTTAGGAGGGAAGATGTT 780
consensus_1063#1      ---------------------------------TGGGATATTTTTAGGAGGGAAGATGTT 27
                                                       ***************************

consensus_1063#0      CCAAAACTGAAATTGTATCTCGACAAGCATTCTAAGGAATTTCGCCATATATACTGTTCT 840
consensus_1063#1      CCAAAACTGAAATTGTATCTCGACAAGCATTCTAAGGAATTTCGCCATATATACTGTTCT 87
                      ************************************************************

consensus_1063#0      GCAGTTCAAAAGGTATGTAACCCTGTACATGATGAAACATTTTATCTAACAGAAGAACAC 900
consensus_1063#1      GCAGTTCAAAAGGTATGTAACCCTGTACATGATGAAACATTTTATCTAACAGAAGAACAC 147
                      ************************************************************

consensus_1063#0      AAGAGAAAACTCAAGGAGGAGCATGGAATTGAGCCTTGGACATTTGTACAAAAACTTGGG 960
consensus_1063#1      AAGAGAAAACTCAAGGAGGAGCATGGAATTGAGCCTTGGACATTTGTACAAAAACTTGGG 207
                      ************************************************************

consensus_1063#0      GAGGCAGTATTCATTCCTGCTGGGTGTCCTCATCAAGTACGGAATCTTAAGTCCTGCACC 1020
consensus_1063#1      GAGGCAGTATTCATTCCTGCTGGGTGTCCTCATCAAGTACGGAATCTTAAGTCCTGCACC 267
                      ************************************************************

consensus_1063#0      AAGATTGCCTTGGATTTTGTATCACCCGAGAATGTTAAGGAGTGTCTCAGCTTAACCGAG 1080
consensus_1063#1      AAGATTGCCTTGGATTTTGTATCACCCGAGAATGTTAAGGAGTGTCTCAGCTTAACCGAG 327
                      ************************************************************

consensus_1063#0      GACTTCCGAAGACTTCCTAAGAACCACAGGGCCAAAGAAGACAAATTAGAGCTAGGTGTG 1140
consensus_1063#1      GACTTCCGAAGACTTCCTAAGAACCACAGGGCCAAAGAAGACAAATTAGAGGTGAATAAG 387
                      *************************************************** *   *  *

consensus_1063#0      GTTCAAA--------ATGGACCCAAGCCCACATACCCTCGAGAAACTATTCTAAACTCTC 1192
consensus_1063#1      ATGATAATCTATGCTATCGACCACAGCTTGAGGATTCTGAAAGAGCGTTTCCCCTCTCCG 447
                       *   **        ** ****  ***      *  **  *  * *  ***    ***  

consensus_1063#0      AATGGGACATCTTGTTGTTTGCAT----ATCATC--CAAATAG-----TTATGACAAAGT 1241
consensus_1063#1      TCCGATTGATGACGATGGTTGCATTGACGTCGTCTTCAAATGGGGTTCCTACGAGAAAGC 507
                         *    **   * ** ******     ** **  ***** *      ** ** **** 

consensus_1063#0      TTAAGAAGATAGATTAATATGTG-ATAATCA----------------------------- 1271
consensus_1063#1      GGATTAGATTATATGCAGGCATGTAGAGTTAGAGATATTTGAGCTCAATAAATAAAGACT 567
                        *  *   ** **  *    ** * * * *                             

consensus_1063#0      ------------------------------------------------------------
consensus_1063#1      TTGNTGAGCAGNTTATGNTTTGTACTATGGGGGGGATTTTCGAATTAANTGGTCAATCCC 627
                                                                                  

consensus_1063#0      ----------------------------------
consensus_1063#1      TTAATGNGCTATAGTAGTGATCTAATGNGATGAT 661