These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10635#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1400 fasta sequence [TTTTTTTTTTGGAGTAGTAATACTCTAGTCAGTATTACCAAATGAAAATCTACTACAAGTCAAAGAACACACAATCTCTAATAAGAACACATCGTTCAGAAAACAATTCATTCTTAATCAAAA-GAAACATAAGGCACATGGGATATGTTGTCCCATTCAGGACCATAGTCGCCATACTTCTCCTT-CAGAA-TGGGGCAACCACTGATGCGCAGTTCAGT-CAGATTGTTCGGCAGGCAAGTCAAGGATT-CCATGTTAGG-ACAGTTGAT-CA-AGTGGAGGCTCTCAAGACCAA-GGACTC-GATCCATATTCTGTGGCAGTGATTTGATGCTGTTACAG-TTGATCAACTGCAGCTGCTCCA-GTGTATCCGGCAAATGGTCGGATTCCA-GCAATACATCGAGTGAGTTCAGTTCTTCGCTGTCTTCGATGATCAGGACTCTGAGAGCCTGGAGGCTAAGCAGAAATGGATCCATATGCGTTGCGACGCTGTCGATGTGCAGAGTGTGGAGTGATTGCATCACATTGCCTTCAGGCAGCTTCAGAGAACTGTGGCACTTCTCAATGTGCAGCTTCTCAACAATGCCGAGGGCACCTTCAATGGCCTTCAGTTCCTTGCACTCAGTTAATTCTAGCTGAAGTAGAGGCCCAGCACAGTGGCTAGAACTAGAAATATCATCCTCCGGAATTCGGAAAGTTGATAGGTTAGAGCAATATCGCAGAATGAACGTTTTAGATCTGTGCATGTCTCTATCTTCAACCCTATTGGGAGATCGGTCGGAAACATCAAGACTTTCACCAGAGGAAATAGCTGATTCCATCCGAGGAGAATCGAAGGATCTCAACTGCACCCCCTCTATTCTGATCTTTTTAACTCTAGCATGAAGACGAGGCAAAACAGTGAGCTCCGGGCAGTTCCTTACTGTAAATTCCTCAAGGCAGGGAAAGCATGGTTCTTGCATTGTCCAATCTTCTAGTGATGGCATATCCTCAATGCAAAGCTTCACTAATGCCGGGAAGTGGCATGCGGTGGAAGAATATGTACGATCAGATTCTGACATTGTTTTCAACATTGAATGTCTTTCTAAAGTCAGCACTTCCAAATTTGGAAGCTTGGCCAAAGGGGCAAACACACTGACAAAAAAGCAGTTCCTCAATGTGATTATCTTCATATTTATCAGTTGATCTTCAGTAAACCAGGTGGGAGTATTGATGCCTGGGTACCCATTGATTTCCAGTTCACTGAGGGACTCCGGTGGTTTGAGCCGTTCAAGAACTTCTTCGCTTAAAAGTTGCGATGTTTCTGTGGAATGCCATTCTAGTTTCAGAGAAACAAGAGAAGTTTTCAAGCTTAAATTAACCTTAGCTGCATTGTTTGCAATCGTCACGTTCTCGAGGTTTGTAATAGA] [-] EMBL BI813365 [TTTTTTTTTTGGAGTAGTAATACTCTAGTCAGTATTACCAAATGACAATCTACTACAAGTCAAAGAACACACAATCTCTAATAAGAACACATCGTTCAGAAAACAATTCATTCTTAATCAAAACGAAACATAAGGCACATGGGATATGTTGTCCCATTCAGGACCATAGTCGCCATACTTCTCCTT CAGAA TGGGGCAACCACTGATGCGCAGTTCAGT CAGATTGTTCGGCAGGCAAGTCAAGGATT CCATGTTAGG ACAGTTGAT CACAGTGGAGGCTCTCAAGACCAA GGGCTC GATCCATATTCTGTGGCAGTGATTTGATGCTGTTACAGTTTGATCAACTG AGCTGCTCCAGGTGTATCCGGCAAATGGTCGGATTCCACGCAATACA ] [-] EMBL BM038975 [ TTTTTTTTT TAGTAATACTCTAGTCAGTATTACCAAATGAAAATCTACTACAAGTCAAAGAACACACAATCTCTAATAAGAACACATCGTTCAGAAAACAATTCATTCTTAATCAAAA GAAACATAAGG ACATGGGATATGTTGTCCCATTCAGGACCATAGTCGCCATACTTCTCCTTCCAGAAGTGGGGCAACCACTGATGCGCAGTTCAGTCCAGATTGTTCGGCAGG AAGTCAAGGATTCCCATGTTAGGCACAGTTGATCCA AGTGGAGGCTCTCAAGAACAAGGGACTCTGATCCATATTCTGT ] [+] EMBL CB623027 [ GTCAGTATTACCAAATGAAAACCTACTACAAGTCAAAGAACACACAATCTCTAATAAGAACACATCGTTCAGAAAACAATTCATTCTTAATCAAAA GAAACATAAGGCACATGGGATATGTTGTCCCATTCAGGACCATAGTCGCCATACTTCTCCTT CAGAA TGGGGCAACCACTGATGCGCAGTTCAGT CAGATTGTTCGGCAGGCAAGTCAAGGATT CCATGTTAGG ACAGTTGAT CA AGTGGAGGCTCTCAAGACCAA GGACTC GATCCATATTCTGTGGCAGTGATTTGATGCTGTTACAG TTGATCAACTGCAGCTGCTCCA GTGTATCCGGCAAATGGTCGGATTCCA GCAATACATCGAGTGAGTTCAGTTCTTCGCTGTCTTCGATGATCAGGACTCTGAGAGCCTGGAGGCTAAGCAGAAATGGATCCATATGCGTTGCGACGCTGTCGATGTGCAGAGTGTGGAGTGATTGCATCACATTGCCTTCAGGCAGCTTCAGAGAACTGTGGCACTTCTCAATGTGCAGCTTCTCAACAATGCCGAGGGCACCTTCAATGGCCTTCAGTTCCTTGCACTCAGTTAATTCTAGCTGAAGTAGAGGCCCAGCACAGTGGCTAGAACTAGAAATATCATCCTCCGGAATTCGGAAAGTTGATAGGTTAGAGCAATATCGCAGAATGAACGTTTTAGATCTGTGCATGTCTCTATCTTCAACCCTATTGGGAGATCGGTCGGAAACATCAAGACTTTCACCAGAGGAAATAGCTGATTCCATCCGAGGAGAATCGAAGGATCTCAACTGCACCCCCTCTATTCTGATCTTTTTAACTCTAGCATGAAGACGAGGC ANACAGTGAGCTCCGG ] [+] EMBL CB623029 [ TCAGTATTACCAAATGAAAATCCTTTACAAGTCAAAGAACACACAATCTCTAATAAGAACACATCGTTCAGAAAACAATTCATTCTTAATCAAAA GAAACATAAGGCACATGGGATATGTTGTCCCATTCAGGACCATAGTCGCCATACTTCTCCTT CAGAA TGGGGCAACCACTGATGCGCAGTTCAGT CAGATTGTTCGGCAGGCAAGTCAAGGATT CCATGTTAGG ACAGTTGAT CA AGTGGAGGCTCTCAAGACCAA GGACTC GATCCATATTCTGTGGCAGTGATTTGATGCTGTTACAG TTGATCAACTGCAGCTGCTCCA GTGTATCCGGCAAATGGTCGGATTCCA GCAATACATCGAGTGAGTTCAGTTCTTCGCTGTCTTCGATGATCAGGACTCTGAGAGCCTGGAGGCTAAGCAGAAATGGATCCATATGCGTTGCGACGCTGTCGATGTGCAGAGTGTGGAGTGATTGCATCACATTGCCTTCAGGCAGCTTCAGAGAACTGTGGCACTTCTCAATGAGCAGCTTCTCAACAATGCCGAGGGCACCTTCAATGGCCTTCAGTTCCTTGCACTCAGTTAATTCTAGCTGAAGTAGAGGCCCAGCACAGTGGCTAGAACTAGAAATATCATCCTCCGGAATTCGGAGAGTTGATAGGTTAGAGCAATATCGCAGAATGAACGTTTTAGATCTGTGCATGTCTCTATCTTCAACCCTATTGGGAGATCGGTCGGAA ] [-] EMBL CB623026 [ CACTCAGTTAATTCTAGCTGAAGTAGAGGCCCAGCACAGTGGCTAGAACTAGAAATATCATCCTCCGGAATTCGGAAAGTTGATAGGTTAGAGCAATATCGCAGAATGAACGTTTTAGATCTGTGCATGTCTCTATCTTCAACCCTATTGGGAGATCGGTCGGAAACATCAAGACTTTCACCAGAGGAAATAGCTGATTCCATCCGAGGAGAATCGAAGGATCTCAACTGCACCCCCTCTATTCTGATCTTTTTAACTCTAGCATGAAGACGAGGCAAAACAGTGAGCTCCGGGCAGTTCCTTACTGTAAATTCCTCAAGGCAGGGAAAGCATGGTTCTTGCATTGTCCAATCTTCTAGTGATGGCATATCCTCAATGCAAAGCTTCACTAATGCCGGGAAGTGGCATGCGGTGGAAGAATATGTACGATCAGATTCTGACATTGTTTTCAACATTGAATGTCTTTCTAAAGTCAGCACTTCCAAATTTGGAAGCTTGGCCAAAGGGGCAAACACACTGACAAAAAAGCAGTTCCTCAATGTGATTATCTTCATATTTATCAGTTGATCTTCAGTAAACCAGGTGGGAGTATTGATGCCTGGGTACCCATTGATTTCCAGTTCACTGAGGGACTCCGGTGGTTTGAGCCGTTCAAGAACTTCTTCGCTTAAAAGTTGCGATGTTTCTGTGGAATGCCATTCTAGTTTCAGAGAAACAAGAGAAGTTTTCAAGCTTAAATTAACCTTAGCTGCATTGTTTGCAATCGTCACGTTCTCGAGGTTTGTAATAGA] [-] EMBL CB623028 [ CTAGCTGAAGTAGAGGCCCAGCACAGTGGCTAGAACTAGAAATATCATCCTCCGGAATTCGGAAAGTTGATAGGTTAGAGCAATATCGCAGAATGAACGTTTTAGATCTGTGCATGTCTCTATCTTCAACCCTATTGGGAGATCGGTCGGAAACATCAAGACTTTCACCAGAGGAAATAGCTGATTCCATCCGAGGAGAATCGAAGGATCTCAACTGCACCCCCTCTATTCTGATCTTTTTAACTCTAGCATGAAGACGAGGCAAAACAGTGAGCTCCGGGCAGTTCCTTACTGTAAATTCCTCAAGGCAGGGAAAGCATGGTTCTTGCATTGTCCAATCTTCTAGTGATGGCATATCCTCAATGCAAAGCTTCACTAATGCCGGGAAGTGGCATGCGGTGGAAGAATATGTACGATCAGATTCTGACATTGTTTTCAACATTGAATGTCTTTCTAAAGTCAGCACTTCCAAATTTGGAAGCTTGGCCAAAGGGGCAAACACACTGACAAAAAAGCAGTTCCTCAATGTGATTATCTTCATATTTATCAGTTGATCTTCAGTAAACCAGGTGGGAGTATTGATGCCTGGGTACCCATTGATTTCCAGTTCACTGAGGGACTCCGGTGGTTTGAGCCGTTCAAGAACTTCTTCGCTTAAAAGTTGCGATGTTTCTGTGGAATGCCATTCTAGTTTCAGAGAAACAAGAGAAGTTTTCAAGCTTAAATTAACCTTAGCTGCATTGTTTGCAATCGTCACGTTCTCGAGGTTTGTAATAGA] consensusID : consensus_10635#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [CCAAGGAACACACAATCTCTAATTAAGAACCACCATCGTTCCAGCAAAACAATTCCATTCTTTAATCCAAAAGAAACATAAGGGCCATGGGATATGTTGTCCCCATTCAGGGACCATAGTCGGCCATACTTCTCCTTCGAATGGGGGGACCACTGGATGCGCAGTTCAGTCCAGATAGTTCGGCCAGGCCAAGTCAAGATTCCCTGTTCAGGCACCGTTGATCCAAGTGGAGGCTCTCAAGAACAAGGACTCGATCCATATTCTGTGGAGGTGATTTTGATGCTGTTACCGTTGATCACCTGAGCTGCTCCAGTGTATCCGGCAAATGGTCGGATTCCAGCACTACCTCGAGGTGAGTTCAGTTCTTCGCGTGTCTTCGATGATCAGGACTCTGAGAGCCTGGGAGGTAAGCCGAAATGGATCCATAATGCGTTGCGGACGCTGTCGATGTGCACAGCTGTGGCA] [-] EMBL BI810750 [CCAAGGAACACACAATCTCTAATTAAGAACCACCATCGTTCCAGCAAAACAATTCCATTCTTTAATCCAAAAGAAACATAAGGGCCATGGGATATGTTGTCCCCATTCAGGGACCATAGTCGGCCATACTTCTCCTTCGAATGGGGGGACCACTGGATGCGCAGTTCAGTCCAGATAGTTCGGCCAGGCCAAGTCAAGATTCCCTGTTCAGGCACCGTTGATCCAAGTGGAGGCTCTCAAGAACAAGGACTCGATCCATATTCTGTGGAGGTGATTTTGATGCTGTTACCGTTGATCACCTGAGCTGCTCCAGTGTATCCGGCAAATGGTCGGATTCCAGCACTACCTCGAGGTGAGTTCAGTTCTTCGCGTGTCTTCGATGATCAGGACTCTGAGAGCCTGGGAGGTAAGCCGAAATGGATCCATAATGCGTTGCGGACGCTGTCGATGTGCACAGCTGTGGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10635#0 TTTTTTTTTTGGAGTAGTAATACTCTAGTCAGTATTACCAAATGAAAATCTACTACAAGT 60 consensus_10635#1 -----------------------------------------------------------C 1 consensus_10635#0 CAAAGAACACACAATCTCTAAT-AAGAACA--CATCGTTCAG--AAAACAATTC-ATTCT 114 consensus_10635#1 CAAGGAACACACAATCTCTAATTAAGAACCACCATCGTTCCAGCAAAACAATTCCATTCT 61 *** ****************** ****** ******** ********** ***** consensus_10635#0 TAA--TCAAAAGAAACATAAGGCACATGGGATATGTTGTCCC-ATTCAGG-ACCATAGTC 170 consensus_10635#1 TTAATCCAAAAGAAACATAAGGGCCATGGGATATGTTGTCCCCATTCAGGGACCATAGTC 121 * * **************** ****************** ******* ********* consensus_10635#0 G-CCATACTTCTCCTTCAGAATGGGGCAACCACTG-ATGCGCAGTTCAGTC-AGATTGTT 227 consensus_10635#1 GGCCATACTTCTCCTTC-GAATGGGGGGACCACTGGATGCGCAGTTCAGTCCAGATAGTT 180 * *************** ******** ******* *************** **** *** consensus_10635#0 CGGC-AGGCAAGTCAAGGATTCCATGTTAGGACA--GTTGATC-AAGTGGAGGCTCTCAA 283 consensus_10635#1 CGGCCAGGCCAAGTCAAGATTCCCTGTTCAGGCACCGTTGATCCAAGTGGAGGCTCTCAA 240 **** **** * * ****** **** * ** ******* **************** consensus_10635#0 GACCAAGGACTCGATCCATATTCTGTGGCAGTGATTT-GATGCTGTTACAGTTGATCAAC 342 consensus_10635#1 GAACAAGGACTCGATCCATATTCTGTGGAGGTGATTTTGATGCTGTTACCGTTGATCACC 300 ** ************************* ******* *********** ******** * consensus_10635#0 TGCAGCTGCTCCAGTGTATCCGGCAAATGGTCGGATTCCAGCAATACATCGAG-TGAGTT 401 consensus_10635#1 TG-AGCTGCTCCAGTGTATCCGGCAAATGGTCGGATTCCAGCACTACCTCGAGGTGAGTT 359 ** **************************************** *** ***** ****** consensus_10635#0 CAGTTCTTCGC-TGTCTTCGATGATCAGGACTCTGAGAGCCTGGAGGCTAAGCAGAAATG 460 consensus_10635#1 CAGTTCTTCGCGTGTCTTCGATGATCAGGACTCTGAGAGCCTGGGAGGTAAGCCGAAATG 419 *********** ******************************** * ***** ****** consensus_10635#0 GATCCATA-TGCGTTGCG-ACGCTGTCGATGTGCAGAG-TGTGGAGTGATTGCATCACAT 517 consensus_10635#1 GATCCATAATGCGTTGCGGACGCTGTCGATGTGCACAGCTGTGGCA-------------- 465 ******** ********* **************** ** ***** consensus_10635#0 TGCCTTCAGGCAGCTTCAGAGAACTGTGGCACTTCTCAATGTGCAGCTTCTCAACAATGC 577 consensus_10635#1 ------------------------------------------------------------ consensus_10635#0 CGAGGGCACCTTCAATGGCCTTCAGTTCCTTGCACTCAGTTAATTCTAGCTGAAGTAGAG 637 consensus_10635#1 ------------------------------------------------------------ consensus_10635#0 GCCCAGCACAGTGGCTAGAACTAGAAATATCATCCTCCGGAATTCGGAAAGTTGATAGGT 697 consensus_10635#1 ------------------------------------------------------------ consensus_10635#0 TAGAGCAATATCGCAGAATGAACGTTTTAGATCTGTGCATGTCTCTATCTTCAACCCTAT 757 consensus_10635#1 ------------------------------------------------------------ consensus_10635#0 TGGGAGATCGGTCGGAAACATCAAGACTTTCACCAGAGGAAATAGCTGATTCCATCCGAG 817 consensus_10635#1 ------------------------------------------------------------ consensus_10635#0 GAGAATCGAAGGATCTCAACTGCACCCCCTCTATTCTGATCTTTTTAACTCTAGCATGAA 877 consensus_10635#1 ------------------------------------------------------------ consensus_10635#0 GACGAGGCAAAACAGTGAGCTCCGGGCAGTTCCTTACTGTAAATTCCTCAAGGCAGGGAA 937 consensus_10635#1 ------------------------------------------------------------ consensus_10635#0 AGCATGGTTCTTGCATTGTCCAATCTTCTAGTGATGGCATATCCTCAATGCAAAGCTTCA 997 consensus_10635#1 ------------------------------------------------------------ consensus_10635#0 CTAATGCCGGGAAGTGGCATGCGGTGGAAGAATATGTACGATCAGATTCTGACATTGTTT 1057 consensus_10635#1 ------------------------------------------------------------ consensus_10635#0 TCAACATTGAATGTCTTTCTAAAGTCAGCACTTCCAAATTTGGAAGCTTGGCCAAAGGGG 1117 consensus_10635#1 ------------------------------------------------------------ consensus_10635#0 CAAACACACTGACAAAAAAGCAGTTCCTCAATGTGATTATCTTCATATTTATCAGTTGAT 1177 consensus_10635#1 ------------------------------------------------------------ consensus_10635#0 CTTCAGTAAACCAGGTGGGAGTATTGATGCCTGGGTACCCATTGATTTCCAGTTCACTGA 1237 consensus_10635#1 ------------------------------------------------------------ consensus_10635#0 GGGACTCCGGTGGTTTGAGCCGTTCAAGAACTTCTTCGCTTAAAAGTTGCGATGTTTCTG 1297 consensus_10635#1 ------------------------------------------------------------ consensus_10635#0 TGGAATGCCATTCTAGTTTCAGAGAAACAAGAGAAGTTTTCAAGCTTAAATTAACCTTAG 1357 consensus_10635#1 ------------------------------------------------------------ consensus_10635#0 CTGCATTGTTTGCAATCGTCACGTTCTCGAGGTTTGTAATAGA 1400 consensus_10635#1 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Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||