cluster # 1064

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Oryza sativa
cluster # 1064 cluster # 1064 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1064#0 length = 426 sequences # 1

consensus_1064#1 length = 348 sequences # 1

consensusID : consensus_1064#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 426
fasta sequence

                              [TTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATTTTGGGGGTATATAGCCGGATTTTTGTTTTCACATATCCTCACCCAACGAAAATTGGAGTACTCTTTTAATAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATTTGTGTTAAAAACAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCTTACTTTTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAACTTAATTGCCACCAAACTCCTTGAAACCTGGGGGCTTGTAGGCGATGAAACTAATAAACTGCACCTGCCTGACGTTGTCAAACCCGATGATACGGACAAAGGCATCGGGGTAGGCCTT]

[+] EMBL CF298240             [TTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATTTTGGGGGTATATAGCCGGATTTTTGTTTTCACATATCCTCACCCAACGAAAATTGGAGTACTCTTTTAATAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATTTGTGTTAAAAACAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCTTACTTTTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAACTTAATTGCCACCAAACTCCTTGAAACCTGGGGGCTTGTAGGCGATGAAACTAATAAACTGCACCTGCCTGACGTTGTCAAACCCGATGATACGGACAAAGGCATCGGGGTAGGCCTT]




>consensus_1064#0
TTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATTTTGGGGGTATATAGCC
GGATTTTTGTTTTCACATATCCTCACCCAACGAAAATTGGAGTACTCTTTTAATAAACCG
GCCGGAAAGGGAGGGAAAAAATTATTACATTTGTGTTAAAAACAAAGGCCATTGAAATGG
TACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAAC
ATAGCCCAAAACAAAGCTGCTTACTTTTATTATAGGCAGCAATCCACCAGCGCGATGCTT
GATCTTAACTTAATTGCCACCAAACTCCTTGAAACCTGGGGGCTTGTAGGCGATGAAACT
AATAAACTGCACCTGCCTGACGTTGTCAAACCCGATGATACGGACAAAGGCATCGGGGTA
GGCCTT

consensusID : consensus_1064#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 348
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTGTTTTACATATCCTCACCCAACGATAATTGGAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAAAAATTATTACATATGTGTTAAAAACAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAACTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCACCTGCCTGACGTTGTCGAAACCCATG]

[+] EMBL CF298901             [TTTTTTTTTTTTTTTTTTTGTTTTACATATCCTCACCCAACGATAATTGGAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAAAAATTATTACATATGTGTTAAAAACAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAACTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCACCTGCCTGACGTTGTCGAAACCCATG]




>consensus_1064#1
TTTTTTTTTTTTTTTTTTTGTTTTACATATCCTCACCCAACGATAATTGGAGTACTCTTA
CAATAAAACCGGCCGGAGAGGGAGGGAAAAAATTATTACATATGTGTTAAAAACAAAGGC
CATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGAT
ATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCA
GCGCGATGCTTGATCTTAACTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAG
GCGATGAAACTAATCAACTGCACCTGCCTGACGTTGTCGAAACCCATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1064#0      TTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATTTTGGGGGTATATAGCC 60
consensus_1064#1      --------------------------------------------------TTTTTTTTTT 10
                                                                         * * *    

consensus_1064#0      GGATTTTTGTTTTCACATATCCTCACCCAACGAAAATTGGAGTACTCTTTTAATAAA-CC 119
consensus_1064#1      TTTTTTTTTGTTTTACATATCCTCACCCAACGATAATTGGAGTACTCTTACAATAAAACC 70
                         *****  *** ******************* ***************  ****** **

consensus_1064#0      GGCCGGAAAGGGAGGGAAAAAATTATTACATTTGTGTTAAAAACAAAGGCCATTGAAATG 179
consensus_1064#1      GGCCGGAGAGGGAGGGAAAAAATTATTACATATGTGTTAAAAACAAAGGCCATTGAAATG 130
                      ******* *********************** ****************************

consensus_1064#0      GTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAA 239
consensus_1064#1      GTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAA 190
                      ************************************************************

consensus_1064#0      CATAGCCCAAAACAAAGCTGCTTACTTTTATTATAGGCAGCAATCCACCAGCGCGATGCT 299
consensus_1064#1      CATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCT 250
                      ********************* **** *********************************

consensus_1064#0      TGATCTTAACTTAATTGCCACCAAACTCCTTGAAACCTGGGGGCTTGTAGGCGATGAAAC 359
consensus_1064#1      TGATCTTAACTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAAC 310
                      ****************************** * ***************************

consensus_1064#0      TAATAAACTGCACCTGCCTGACGTTGTCAAACCCGATGATACGGACAAAGGCATCGGGGT 419
consensus_1064#1      TAATCAACTGCACCTGCCTGACGTTGTCGAAACCCATG---------------------- 348
                      **** *********************** ** ** ***                      

consensus_1064#0      AGGCCTT 426
consensus_1064#1      -------