cluster # 10641

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Oryza sativa
cluster # 10641 cluster # 10641 Sequences # 7 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10641#0 length = 482 sequences # 3
consensus_10641#1 length = 459 sequences # 1

consensus_10641#2 length = 396 sequences # 1
consensus_10641#3 length = 395 sequences # 1
consensus_10641#4 length = 349 sequences # 1

consensusID : consensus_10641#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 482
fasta sequence

                              [ACCACTACAAACAATCACAACCAATCACCAAGACTACTTGTCTTCTTCAAATCAATCAACATGGACACCGTCAAGAACGCCGCCAACTACGTCTCCGAGACCGTCCAGAGCGCCACCTCGGGTGCTTCCAAGGAGGCCAACAAGGAGGTCGCCAAGGACAACAACGCCAGCCTTGGAACTCGTGCCGAGGCCGGCATTGACGCCCTCAAGGACAAGGGCAACGAGCACAAGCACG-ATGCTTCGGCCACCGCCAACAAGGAGGCTGCCAAGCACTAAGCAGTTCACCATGCATCCTCATCGCTTCCACGAACGGGACGCAGCTTTCTTCTCATGACAAATTCAGACGGCGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTTCACTTCGTCGACACAATACCCTTTAGGCAGATTACTTAGTCTAATTCATTCAGACGATTGATACCAAAAAAAAAAAAA]

[+] EMBL AT003350             [ACCACTACAAACAATCACAACCAATCACCAAGACTACTTGTCTTCTTCAAATCAATCAACATGGACACCGTCAAGAACGCCGCCAACTACGTCTCCGAGACCGTCCAGAGCGCCACCTCGGGTGCTTCCAAGGAGGCCAACAAGGAGGTCGCCAAGGACAACAACGCCAGCCTTGGAACTCGTGCCGAGGCCGGCATTGACGCCCTCAAGGACAAGGGCAACGAGCACAAGCACG ATGCTTCGGCCACCGCCAACAAGGAGGCTGCCAAGCACTAAGCAGTTCACCATGCATCCTCATCGCTTCCACGAACGGGACGCAGCTTTCTTCTCATGACAAATTCAGACGGCGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTTCACTTCGTCGACACAATACCCTTTAGGCAGATTACTTAGTCTAATTCATTCAGACGATTGATAACAAAAAAAA     ]
[+] EMBL AT003646             [                                                                                                          anAGCGCCNCCTCGGGTGCTTCCAAGGAGGCCAACAAGGAGGTCGCCAAGGACAACAACGCCAGCCTTGGAACTCGTGCCGAGGCCGGCATTGACGCCCTCAAGGACAAGGGCAACGAGCACAAGCACG ATGCTTCGGCCACCGCCAACAAGGAGGCTGCCAAGCACTAAGCAGTTCACCATGCATCCTCATCGCTTCCACGAACGGGACGCAGCTTTCTTCTCATGACAAATTCAGACGGCGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTTCACTTCGTCGACACAATACCCTTTAGGCAGATTACTTAGTCTAATTCATTCAGACGATTGATACCAAAAAAAAAAAAA]
[+] EMBL AT003594             [                                                                                                                                                                                                  CATTGACGCCCTCAAGGNCAAGGGCACCGAGCCCAAGCACGAATGTTTCGGCCACCGCCAACAAGAAGGCTGCCAAGCACTAAGCAGTTCACCATGCATCCTCATCGCTTCCACGAACGGGACGCAGCTTTCTTCTCATGACAAATTCAGACGGCGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTTCACTTCGTCGACACAATACCCTTTAGGCAGATTACTTAGTCTAATTCATTCAGACGATTGATACCAAAAAAAAAAAAA]




>consensus_10641#0
ACCACTACAAACAATCACAACCAATCACCAAGACTACTTGTCTTCTTCAAATCAATCAAC
ATGGACACCGTCAAGAACGCCGCCAACTACGTCTCCGAGACCGTCCAGAGCGCCACCTCG
GGTGCTTCCAAGGAGGCCAACAAGGAGGTCGCCAAGGACAACAACGCCAGCCTTGGAACT
CGTGCCGAGGCCGGCATTGACGCCCTCAAGGACAAGGGCAACGAGCACAAGCACGATGCT
TCGGCCACCGCCAACAAGGAGGCTGCCAAGCACTAAGCAGTTCACCATGCATCCTCATCG
CTTCCACGAACGGGACGCAGCTTTCTTCTCATGACAAATTCAGACGGCGTTTCGGACATT
TGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTTCACTTCGTCGACACAA
TACCCTTTAGGCAGATTACTTAGTCTAATTCATTCAGACGATTGATACCAAAAAAAAAAA
AA

consensusID : consensus_10641#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 459
fasta sequence

                              [NGTGGGCCCGCTTCTTAGAANCTTAGGTGGATTCCNNCCCGGGCTGCAAGGAATTTCGGGCACCCAAGAAGCCGTTCCAGAGCGCCCACCTTGGGGTGCTTCCCAAGGAGGCCCAACAAGGAGGTCGCCAAGGACAACCAACGCCACCTTGGAACTCGTGCCGAGGCCGGCATTGACGCCCCTCAAGGACAAGGGCAACGAGCACAAGCACGATGCTTCGGCCACCGCCAACAAGGAGGCTGCCAAGCACTAACCAGTTCACCATGCATCCTCATCGCTTCCACGAACGGGACGCAGCTTTCTTCTCATGACAAATTCAGACGGCGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTTCACTTCGTCGACACAATACCCNTTAGGCAGATTACTTAGTCTAATTCATTCAGACGATTGATAACAAAAAAAAAAAAA]

[+] EMBL AT003618             [NGTGGGCCCGCTTCTTAGAANCTTAGGTGGATTCCNNCCCGGGCTGCAAGGAATTTCGGGCACCCAAGAAGCCGTTCCAGAGCGCCCACCTTGGGGTGCTTCCCAAGGAGGCCCAACAAGGAGGTCGCCAAGGACAACCAACGCCACCTTGGAACTCGTGCCGAGGCCGGCATTGACGCCCCTCAAGGACAAGGGCAACGAGCACAAGCACGATGCTTCGGCCACCGCCAACAAGGAGGCTGCCAAGCACTAACCAGTTCACCATGCATCCTCATCGCTTCCACGAACGGGACGCAGCTTTCTTCTCATGACAAATTCAGACGGCGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTTCACTTCGTCGACACAATACCCNTTAGGCAGATTACTTAGTCTAATTCATTCAGACGATTGATAACAAAAAAAAAAAAA]




>consensus_10641#1
NGTGGGCCCGCTTCTTAGAANCTTAGGTGGATTCCNNCCCGGGCTGCAAGGAATTTCGGG
CACCCAAGAAGCCGTTCCAGAGCGCCCACCTTGGGGTGCTTCCCAAGGAGGCCCAACAAG
GAGGTCGCCAAGGACAACCAACGCCACCTTGGAACTCGTGCCGAGGCCGGCATTGACGCC
CCTCAAGGACAAGGGCAACGAGCACAAGCACGATGCTTCGGCCACCGCCAACAAGGAGGC
TGCCAAGCACTAACCAGTTCACCATGCATCCTCATCGCTTCCACGAACGGGACGCAGCTT
TCTTCTCATGACAAATTCAGACGGCGTTTCGGACATTTGCGAGGCAGGGACATCATGAAT
AGGGTTTTTTAATTGGGATTTCACTTCGTCGACACAATACCCNTTAGGCAGATTACTTAG
TCTAATTCATTCAGACGATTGATAACAAAAAAAAAAAAA

consensusID : consensus_10641#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence

                              [GGCTNCCAANAACCCNTCCCAGAGNGGNNNNNTTNNGGGGGTTCAAAGNGGNCCNCTAGGAGNNGGCAAGGACCACNNNTCTNGCTTGGAACTCTGTGCCGAGGCCGGCATTGACGCCTTCAAGGNCAANGGCANCGAGCANAAGCGNGATGCTTCGGCCCCCGCCANCAAGGAGNCTGCCAAGCNCTAAGCAGTTCACCATGCATCCTCATCGCTTCCACGAACGGGACGCAGCTTTCTTNTCATGACAAATTCAGACGGCGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTTCNCTTNGTCGACNCAATACCCTNTAGGCAGATTNNTTAGTCTAATTCATTCAGACGATTGCTACCAAAAAAAAAAAAA]

[+] EMBL AT003605             [GGCTNCCAANAACCCNTCCCAGAGNGGNNNNNTTNNGGGGGTTCAAAGNGGNCCNCTAGGAGNNGGCAAGGACCACNNNTCTNGCTTGGAACTCTGTGCCGAGGCCGGCATTGACGCCTTCAAGGNCAANGGCANCGAGCANAAGCGNGATGCTTCGGCCCCCGCCANCAAGGAGNCTGCCAAGCNCTAAGCAGTTCACCATGCATCCTCATCGCTTCCACGAACGGGACGCAGCTTTCTTNTCATGACAAATTCAGACGGCGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTTCNCTTNGTCGACNCAATACCCTNTAGGCAGATTNNTTAGTCTAATTCATTCAGACGATTGCTACCAAAAAAAAAAAAA]




>consensus_10641#2
GGCTNCCAANAACCCNTCCCAGAGNGGNNNNNTTNNGGGGGTTCAAAGNGGNCCNCTAGG
AGNNGGCAAGGACCACNNNTCTNGCTTGGAACTCTGTGCCGAGGCCGGCATTGACGCCTT
CAAGGNCAANGGCANCGAGCANAAGCGNGATGCTTCGGCCCCCGCCANCAAGGAGNCTGC
CAAGCNCTAAGCAGTTCACCATGCATCCTCATCGCTTCCACGAACGGGACGCAGCTTTCT
TNTCATGACAAATTCAGACGGCGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGG
GTTTTTTAATTGGGATTTCNCTTNGTCGACNCAATACCCTNTAGGCAGATTNNTTAGTCT
AATTCATTCAGACGATTGCTACCAAAAAAAAAAAAA

consensusID : consensus_10641#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence

                              [NAAATNNNACCCGCCCCANCCGGNTCTTGGAAATANACNTCTAGAGCAGATGGTNNTGATANTGTCAANGTCTCTNACAGCNAGATTGCCCTTAGTGGAGAGNACNCCATNATTGGCCTAAAGGTTGTTGNCCATGAGTGATAANTGATGATNTTGGNAAGGGTGGNCATAAGGNGAGCAANAACCCTTAAAANGTTGGGNATGNATNTTCATNGGTTNNNNGAAGGGGACNNAGTTTTNTTTTCATGNCAAATTCANACGGNGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTTCACTTAGGTCGACACAATACCCTTTAGGCAGATTATTTAGTCTAATTCATTCAGACCCCTTCATANCAAAAAAAAA]

[+] EMBL AT003592             [NAAATNNNACCCGCCCCANCCGGNTCTTGGAAATANACNTCTAGAGCAGATGGTNNTGATANTGTCAANGTCTCTNACAGCNAGATTGCCCTTAGTGGAGAGNACNCCATNATTGGCCTAAAGGTTGTTGNCCATGAGTGATAANTGATGATNTTGGNAAGGGTGGNCATAAGGNGAGCAANAACCCTTAAAANGTTGGGNATGNATNTTCATNGGTTNNNNGAAGGGGACNNAGTTTTNTTTTCATGNCAAATTCANACGGNGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTTCACTTAGGTCGACACAATACCCTTTAGGCAGATTATTTAGTCTAATTCATTCAGACCCCTTCATANCAAAAAAAAA]




>consensus_10641#3
NAAATNNNACCCGCCCCANCCGGNTCTTGGAAATANACNTCTAGAGCAGATGGTNNTGAT
ANTGTCAANGTCTCTNACAGCNAGATTGCCCTTAGTGGAGAGNACNCCATNATTGGCCTA
AAGGTTGTTGNCCATGAGTGATAANTGATGATNTTGGNAAGGGTGGNCATAAGGNGAGCA
ANAACCCTTAAAANGTTGGGNATGNATNTTCATNGGTTNNNNGAAGGGGACNNAGTTTTN
TTTTCATGNCAAATTCANACGGNGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAG
GGTTTTTTAATTGGGATTTCACTTAGGTCGACACAATACCCTTTAGGCAGATTATTTAGT
CTAATTCATTCAGACCCCTTCATANCAAAAAAAAA

consensusID : consensus_10641#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 349
fasta sequence

                              [CANAGGNAGTNTNNCCCAAGGNCAANAACGGCCAGCCTTGNANCTCGGTTCCNAGGCCGNCATTAANGCCCTCAAGGNCAAGGNCAGCGAGCACAAGCNCAATGNTTCGGCCACCGCCAACAAGGAGGCTGCCAAGCANTAACCAGTTCACCANGCATCCTCATNGCTTCCACGAACGGGACGCAGCTTTCTTNTCATNNCAANTTCANACGGCGTTTCGGNCATTTGCNAGGCAGGGTCATCANGAATAGGGTTTTTTAATTGGGATTTCACTTCGTCNACACAATACCCTTTAGGCAGATTACTTAGTCTAATTCATTCAAACGATTGATAACAAAAAAAAAAAAAA]

[+] EMBL AT003587             [CANAGGNAGTNTNNCCCAAGGNCAANAACGGCCAGCCTTGNANCTCGGTTCCNAGGCCGNCATTAANGCCCTCAAGGNCAAGGNCAGCGAGCACAAGCNCAATGNTTCGGCCACCGCCAACAAGGAGGCTGCCAAGCANTAACCAGTTCACCANGCATCCTCATNGCTTCCACGAACGGGACGCAGCTTTCTTNTCATNNCAANTTCANACGGCGTTTCGGNCATTTGCNAGGCAGGGTCATCANGAATAGGGTTTTTTAATTGGGATTTCACTTCGTCNACACAATACCCTTTAGGCAGATTACTTAGTCTAATTCATTCAAACGATTGATAACAAAAAAAAAAAAAA]




>consensus_10641#4
CANAGGNAGTNTNNCCCAAGGNCAANAACGGCCAGCCTTGNANCTCGGTTCCNAGGCCGN
CATTAANGCCCTCAAGGNCAAGGNCAGCGAGCACAAGCNCAATGNTTCGGCCACCGCCAA
CAAGGAGGCTGCCAAGCANTAACCAGTTCACCANGCATCCTCATNGCTTCCACGAACGGG
ACGCAGCTTTCTTNTCATNNCAANTTCANACGGCGTTTCGGNCATTTGCNAGGCAGGGTC
ATCANGAATAGGGTTTTTTAATTGGGATTTCACTTCGTCNACACAATACCCTTTAGGCAG
ATTACTTAGTCTAATTCATTCAAACGATTGATAACAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10641#1      ----------------------------------NGTGGGCCCGCTTCTTAGAANCTTAG 26
consensus_10641#2      ------------------------------------------------------------
consensus_10641#0      ACCACTACAAACAATCACAACCAATCACCAAGACTACTTGTCTTCTTCAAATCAATCAAC 60
consensus_10641#4      ------------------------------------------------------------
consensus_10641#3      ------------------------------------------------------------
                                                                                   

consensus_10641#1      GTGGATTCCNNCCCGGGCTGCAAGGAATTTCGGGCACCCAAGAAGCCGTTCCAGAGCGCC 86
consensus_10641#2      --------------------------------GGCTNCCAANAACCCNTCCCAGAGNGGN 28
consensus_10641#0      ATGGACACCGTCAAGAACGCCGCCAACT-----ACGTCTCCGAGACCGT-CCAGAGCGCC 114
consensus_10641#4      ------------------------------------------------------------
consensus_10641#3      -----------------------------------NAAATNNNACCCGCCCCANCCGGNT 25
                                                                                   

consensus_10641#1      CACCTTGGGGTGCTTCCCAAGGAGGCCCAACAAGGAGGTCGCC-AAGGACAACCAACG-C 144
consensus_10641#2      NNNNTTNNGGGGGTTC--AAAGNGGNCCNCTAGGA--GNNGGC-AAGGACCACNNNT--C 81
consensus_10641#0      A--CCTCGGGTGCTTCC--AAGGAGGCCAACAAGGAGGTCGCC-AAGGACAACAACGC-C 168
consensus_10641#4      ---------------------------CANAGGNAGTNTNNCCCAAGGNCAANAACGGCC 33
consensus_10641#3      CTTGGAAATANACNTCT--AGAGCAGATGGTNNTGATANTGTC-AANGTCTCTNACAG-C 81
                                                                 * ** * *         *

consensus_10641#1      CACCTTGGAACTC-GTGCCGAGGCCGGCATTGACGCCCCTCAAGGACAAGGGCAACGAGC 203
consensus_10641#2      TNGCTTGGAACTCTGTGCCGAGGCCGGCATTGACGCCT-TCAAGGNCAANGGCANCGAGC 140
consensus_10641#0      AGCCTTGGAACTC-GTGCCGAGGCCGGCATTGACGCCC-TCAAGGACAAGGGCAACGAGC 226
consensus_10641#4      AGCCTTGNANCTCGGTTCCNAGGCCGNCATTAANGCCC-TCAAGGNCAAGGNCAGCGAGC 92
consensus_10641#3      NAGATTGC-CCTTAGTGGAGAGNACNCCATNATTGGCC-TAAAGGTTGTTGNCCATGAGT 139
                           ***   **  **    **  *  ***    * *  * ****     * *   *** 

consensus_10641#1      -ACAAGC-ACGATGCTTCGGCCACCGCCAACAAGGAGGCTGCCAAGCACTAACCAGTTCA 261
consensus_10641#2      -ANAAGC-GNGATGCTTCGGCCCCCGCCANCAAGGAGNCTGCCAAGCNCTAAGCAGTTCA 198
consensus_10641#0      -ACAAGC-ACGATGCTTCGGCCACCGCCAACAAGGAGGCTGCCAAGCACTAAGCAGTTCA 284
consensus_10641#4      -ACAAGC-NCAATGNTTCGGCCACCGCCAACAAGGAGGCTGCCAAGCANTAACCAGTTCA 150
consensus_10641#3      GATAANTGATGATNTTGGNAAGGGTGGNCATAAGGNGAGCAANAACCCTTAAAANGTTGG 199
                        * **      **  *         *     **** *      ** *  ***   ***  

consensus_10641#1      CCATGCATCCTCATCGCTTCCACGAACGGGACGCAGCTTTCTTCTCATGACAAATTCAGA 321
consensus_10641#2      CCATGCATCCTCATCGCTTCCACGAACGGGACGCAGCTTTCTTNTCATGACAAATTCAGA 258
consensus_10641#0      CCATGCATCCTCATCGCTTCCACGAACGGGACGCAGCTTTCTTCTCATGACAAATTCAGA 344
consensus_10641#4      CCANGCATCCTCATNGCTTCCACGAACGGGACGCAGCTTTCTTNTCATNNCAANTTCANA 210
consensus_10641#3      GNATGNATNTTCATNGGTTNNNNGAAGGGGACNNAGTTTTNTTTTCATGNCAAATTCANA 259
                         * * **  **** * **    *** *****  ** *** ** ****  *** **** *

consensus_10641#1      CGGCGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTT 381
consensus_10641#2      CGGCGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTT 318
consensus_10641#0      CGGCGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTT 404
consensus_10641#4      CGGCGTTTCGGNCATTTGCNAGGCAGGGTCATCANGAATAGGGTTTTTTAATTGGGATTT 270
consensus_10641#3      CGGNGTTTCGGACATTTGCGAGGCAGGGACATCATGAATAGGGTTTTTTAATTGGGATTT 319
                       *** ******* ******* ******** ***** *************************

consensus_10641#1      CACTTCG-TCGACACAATACCCNTTAGGCAGATTACTTAGTCTAATTCATTCAGACGA-T 439
consensus_10641#2      CNCTTNG-TCGACNCAATACCCTNTAGGCAGATTNNTTAGTCTAATTCATTCAGACGA-T 376
consensus_10641#0      CACTTCG-TCGACACAATACCCTTTAGGCAGATTACTTAGTCTAATTCATTCAGACGA-T 462
consensus_10641#4      CACTTCG-TCNACACAATACCCTTTAGGCAGATTACTTAGTCTAATTCATTCAAACGA-T 328
consensus_10641#3      CACTTAGGTCGACACAATACCCTTTAGGCAGATTATTTAGTCTAATTCATTCAGACCCCT 379
                       * *** * ** ** ********  **********  ***************** **   *

consensus_10641#1      TGATAACAAAAAAAAAAAAA- 459
consensus_10641#2      TGCTACCAAAAAAAAAAAAA- 396
consensus_10641#0      TGATACCAAAAAAAAAAAAA- 482
consensus_10641#4      TGATAACAAAAAAAAAAAAAA 349
consensus_10641#3      TCATANCAAAAAAAAA----- 395
                       *  ** **********