These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10642#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1254 fasta sequence [CCTCCTCCCTTCCTCTCTTCTTTCCTCGCCGACGACGCGATTCCCCACCGGCGTACGGCGGCGGCGGCGGCGAGGGATTTCGCCGGCCAGCTAGCCCCATCCTCAACAAAATCGAGGGGTCGGTTGCTCTCCCGGTGGAAGAGCCCCATGGCCTCCGCCACCGCCCCGCAGCCTGTGTCCTCTCCATCCGCCGCAGCCGGCGCCGCGTCGAACAACCCCCACAAGCGCAAGAAGCCGGCGGCG-AGGGGGAAGGGGAAGGGCAA-GGGAAAGGGCCGCCT-CGCCAAGACGCCCAGGCGCTCCGATGACCCCGGCGACCTCCCCCGCCGCCGCAGCAAGCCCAGCGACAGGTTCCTCAAGCTGCTCCGCAAGCGCGCCCGCGACTACAACTCCGACGACTCCGACGACGAGGAGCGCCTCTCGGATGAGGACGAGGAGGAGGAGGGGGCTTCCGGCTCCGGTGACGACGAGGCCGCCGGCGCGGTGACCAGGTTCGAGCAGGGGTGCCGCGCGTTCCGCGTCGCCTTCACGAAGATCATGGCCAAGAAGCTCCCCGACGACCCACTGGGTCCAATTCTTTCGGCGCACAAGAAGCTGGTCGCCGCCAAGTTGGCCGAGGACGCAGAAGAACACAAGCCCAAGGGAGAAGGCCGCAGGGAAAAGCGCATGGCTGCAGAGAAGGGCCATGTCATTCCCACAAATCATTTAGATAGTAAAGAGAAGGAGCTCATCAAAATCGCAACCCAAGGGGTCGTCAGGTTGTTCAACTCGGTAAGCAAGGCGCAGAATTGTCGGAAAGGTTTGAACCCATCAAGGAGTAAAGACGCCAAAGTGTTGGCAAAAGAAACAAAGCAGGCCTTCCTCACAGAATTAAGCAAAACATCTAACCAAAGTCAAAAGGGCAAGGCATCTTCCAACTTTTCTAAGAACAATAGCAAAGACGAAGACGAACCTGGGTGGGCACCCCTACGCGAGACATACATGCTTGGGTCGAAATTGAAAGATTGGGATAAAATGCAGACCTCTGATGTTGTGAATGAACAAACGGAGATCCCTTTGGACGACTCTTCTGATGAGGAATAGGCAATAGATTCACCTGAGTGAGTTGAAGCAGCATTTGGGACAATGTTCCTGTGCTTTGAAGTCGTGTTCTTGTTATTGACATTGTAAAGCGATATTTGGTTCAAATTTGCAAGTTAAGTTTTCTTATCATTGTTTCATGCATTGATGAATGTGATGGCTAATGCACGGCACGGG] [+] EMBL AK073284 [CCTCCTCCCTTCCTCTCTTCTTTCCTCGCCGACGACGCGATTCCCCACCGGCGTACGGCGGCGGCGGCGGCGAGGGATTTCGCCGGCCAGCTAGCCCCATCCTCAACAAAATCGAGGGGTCGGTTGCTCTCCCGGTGGAAGAGCCCCATGGCCTCCGCCACCGCCCCGCAGCCTGTGTCCTCTCCATCCGCCGCAGCCGGCGCCGCGTCGAACAACCCCCACAAGCGCAAGAAGCCGGCGGCG AGGGGGAAGGGGAAGGGCAA GGGAAAGGGCCGCCT CGCCAAGACGCCCAGGCGCTCCGATGACCCCGGCGACCTCCCCCGCCGCCGCAGCAAGCCCAGCGACAGGTTCCTCAAGCTGCTCCGCAAGCGCGCCCGCGACTACAACTCCGACGACTCCGACGACGAGGAGCGCCTCTCGGATGAGGACGAGGAGGAGGAGGGGGCTTCCGGCTCCGGTGACGACGAGGCCGCCGGCGCGGTGACCAGGTTCGAGCAGGGGTGCCGCGCGTTCCGCGTCGCCTTCACGAAGATCATGGCCAAGAAGCTCCCCGACGACCCACTGGGTCCAATTCTTTCGGCGCACAAGAAGCTGGTCGCCGCCAAGTTGGCCGAGGACGCAGAAGAACACAAGCCCAAGGGAGAAGGCCGCAGGGAAAAGCGCATGGCTGCAGAGAAGGGCCATGTCATTCCCACAAATCATTTAGATAGTAAAGAGAAGGAGCTCATCAAAATCGCAACCCAAGGGGTCGTCAGGTTGTTCAACTCGGTAAGCAAGGCGCAGAATTGTCGGAAAGGTTTGAACCCATCAAGGAGTAAAGACGCCAAAGTGTTGGCAAAAGAAACAAAGCAGGCCTTCCTCACAGAATTAAGCAAAACATCTAACCAAAGTCAAAAGGGCAAGGCATCTTCCAACTTTTCTAAGAACAATAGCAAAGACGAAGACGAACCTGGGTGGGCACCCCTACGCGAGACATACATGCTTGGGTCGAAATTGAAAGATTGGGATAAAATGCAGACCTCTGATGTTGTGAATGAACAAACGGAGATCCCTTTGGACGACTCTTCTGATGAGGAATAGGCAATAGATTCACCTGAGTGAGTTGAAGCAGCATTTGGGACAATGTTCCTGTGCTTTGAAGTCGTGTTCTTGTTATTGACATTGTAAAGCGATATTTGGTTCAAATTTGCAAGTTAAGTTTTCTTATCATTGTTTCATGCATTGATGAATGTGATGGCTAATGCACGGCACGGG] [+] EMBL AU062471 [ tatnCCTCGCCGACGACGCGATTCCCCACCGGCGTACGGCGGCGGCGGCGGCGAGGGATTTCGCCGTCCAGCTAGCCCCATCCTCAACAAAATCGAGGGGTCGNTTGCTCTCCCGGTGGAAGAGCCCCATGGCCTCCGNCACCGTCCCGCAGCCTGTGTCCTCTCCATCCGNCGAAGACGNCGCCGCGTCGAACAACCCCCACAAGCGCAAGAAGCCGNCGGCGAAGGNGGAAGGGGAAGGGCAAGGGGAAAGGGCCGCCTNGGCCAAG ] [+] EMBL CB000693 [ gAGAACACAAGCCCAAGGGAGAAGGCCGCAGGGAAAAGCGCATGGCTGCAGAGAAGGGCCATGTCATTCCCACAAATCATTTAGATAGTAAAGAGAAGGAGCTCATCAAAATCGCAACCCAAGGGGTCGTCAGGTTGTTCAACTCGGTAAGCAAGGCGCAGAATTGTCGGAAAGGTTTGAACCCATCAAGGAGTAAAGACGCCAAAGTGTTGGCAAAAGAAACAAAGCAGGCCTTCCTCACAGAATTAAGCAAAACATCTAACCAAAGTCAAAAGGGCAAGGCATCTTCCAACTTTTCTAAGAACAATAGCAAAGACGAAGACGAACCTGGGTGGGCACCCCTACGCGAGACATACATGCTTGGGTCGAAATTGAAAGATTGGGATAAAATGCAGACCTCTGATGTTGTGAATGAACAAACGGAGATCCCTTTGGACGA ] consensusID : consensus_10642#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 682 fasta sequence [TCTTCAAACACATCTATTTACAGTTGGAGGGATTTCATATGGAGGGAGTGTTCAACAATGAGTAAATCTGACATCATTTAAANAAGCACCCGTATCCTCAGCATTAGCATTAAAGAATATACGTGTTAAGAATATACAAAGTTGGACTGTGTTTCTGTATGTGTACCTGTGATTCATCAGATATATAATAAACTATCTACTGTTTCTCATGCCATAAGTTAACTAAATCAGATGTAAAATGATTTAACCTGTGACAAGTTGGCTGCTCTTGTGCGCCATATCTGAATTTCATTTNATTTCGGAACATATTTTATACATATTTTTATGTATTTGGAACTTAAGAAGCTCTTGGATATTTCTCACACTTGATGTGCTTCAGAACAATAGCAAAGACGAAGACGAAACCTGGGTGGGCACCCCTACGCGAGACATACATGCTTGGGTCGAAATTGAAAGATTGGGATAAAATGCAGACCTCTGATGTTGTGAATGAACAAACGGAGATCCCTTTGGACGACTCTTCTGATGAGGAATAGGCAATAGATTCACCTGAGTGAGTTGAAGCAGCATTTGGGACAATGTTCCTGTGC---TTTGAAGTCGTGTTCTTGTTATTGACATTGTAAAGCGATATTTGGTTCAAATTTGCAAGTTAAGTTTTCTTATCATTGTTTCATGCAAAAAA] [+] EMBL AU101166 [TCTTCAAACACATCTATTTACAGTTGGAGGGATTTCATATGGAGGGAGTGTTCAACAATGAGTAAATCTGACATCATTTAAANAAGCACCCGTATCCTCAGCATTAGCATTAAAGAATATACGTGTTAAGAATATACAAAGTTGGACTGTGTTTCTGTATGTGTACCTGTGATTCATCAGATATATAATAAACTATCTACTGTTTCTCATGCCATAAGTTAACTAAATCAGATGTAAAATGATTTAACCTGTGACAAGTTGGCTGCTCTTGTGCGCCATATCTGAATTTCATTTNATTTCGGAACATATTTTATACATATTTTTATGTATTTGGAACTTAAGAAGCTCTTGGATATTTCTCACACTTGATGTGCTTCAGAACAATAGCAAAGACGAAGACGAAACCTGGGTGGGCACCCCTACGCGAGACATACATGCTTGGGTCGAAATTGAAAGATTGGGATAAAATGCAGACCTCTGATGTTGTGAATGAACAAACGGAGATCCCTTTGGACGACTCTTCTGATGAGGAATAGGCAATAGATTCACCTGAGTGAGTTGAAGCAGCATTTGGGACAATGTTCCTGTGC TTTGAAGTCGTGTTCTTGTTATTGACATTGTAAAGCGATATTTGGTTCAAATTTGCAAGTTAAGTTTTCTTATCATTGTTTCATGCAAAAA ] [+] EMBL BI799976 [ GGGTGGGCACCCCTACGCGAGACATACATGCTTGGGTCGAAATTGAAAGATTGGGATAAAATGCAGACCTCTGATGTTGTGAATGAACAAACGGAGATCCCTTTGGACGACTCTTCTGATGAGGAATATGCAATAGATTCACCTGAGTGAGTTGAAGCAGCATTTGGGACAATGTTCCTGTGCTTTTTTGAAGTCGTGTTCTTGTTATGGACATTGTAAAGCGATATTTGGTTCAAATTTGCAAGTTAAGTTTTCTTATCACTGTTTCATGCAAAAAA] consensusID : consensus_10642#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 373 fasta sequence [GCAGGCCTTCCTCACAGAATTAAGCAAAACATCTANCCAAAGTCAAAAGGGCAAGGCATCTTCCCAACTTTTCTAAGANCAATAGCAAAGACGAAGACGAACCTGGGNGGGCNCCCCTACGCGAGACATACATGCTTGGGTCGAAATTGAAAGATTGGGATAAAATGCAGACCTCTGATGTTGTGAATGAACAAACGGAGATCCCTTTGGACGACTCTTCTGATGAGGAATAGGCAATAGATTCACCTGAGTGAGTTGAAGCAGCATTTGGGACAATGTTCCTGTGCTTTGAAGTCGTGTTCTTGTTATTGACNTTGTAAAGCGATATTTGGTTCAAATTTGCAAGTTAAGTTTTCTTATCAAAAAAAAAAAA] [+] EMBL AU092185 [GCAGGCCTTCCTCACAGAATTAAGCAAAACATCTANCCAAAGTCAAAAGGGCAAGGCATCTTCCCAACTTTTCTAAGANCAATAGCAAAGACGAAGACGAACCTGGGNGGGCNCCCCTACGCGAGACATACATGCTTGGGTCGAAATTGAAAGATTGGGATAAAATGCAGACCTCTGATGTTGTGAATGAACAAACGGAGATCCCTTTGGACGACTCTTCTGATGAGGAATAGGCAATAGATTCACCTGAGTGAGTTGAAGCAGCATTTGGGACAATGTTCCTGTGCTTTGAAGTCGTGTTCTTGTTATTGACNTTGTAAAGCGATATTTGGTTCAAATTTGCAAGTTAAGTTTTCTTATCAAAAAAAAAAAA] consensusID : consensus_10642#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence [ACGCCAAAGTGTTGGCAAAAGAAACAAAGCAGGCCTTCCTCACAGAATTAAGCAAAACATCTAACCAAAGTCAAAAGGGCAAGGCATCTTCCAACTTTTCTAAGGTAGCTATGATAATTCTCTCTTTACTCAAAAACACTCCATTTCATTTTATAGACTTCTGTTGCTAAGTATTTGTGTTGTATCTTCAAATTCAAATTAGTTGTTCTCAGAGGCATATCTGGTGGAACTGTTGTNCAAATTAGTTATGCNAATTTTGATGCAATTACAGCCTCAATAAATCCAAACGGGACACTGCAATACAAGT] [+] EMBL C72695 [ACGCCAAAGTGTTGGCAAAAGAAACAAAGCAGGCCTTCCTCACAGAATTAAGCAAAACATCTAACCAAAGTCAAAAGGGCAAGGCATCTTCCAACTTTTCTAAGGTAGCTATGATAATTCTCTCTTTACTCAAAAACACTCCATTTCATTTTATAGACTTCTGTTGCTAAGTATTTGTGTTGTATCTTCAAATTCAAATTAGTTGTTCTCAGAGGCATATCTGGTGGAACTGTTGTNCAAATTAGTTATGCNAATTTTGATGCAATTACAGCCTCAATAAATCCAAACGGGACACTGCAATACAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10642#0 CCTCCTCCCTTCCTCTCTTCTTTCCTCGCCGACGACGCGATTCCCCACCGGCGTACGGCG 60 consensus_10642#2 ------------------------------------------------------------ consensus_10642#1 ------------------------------------------------------------ consensus_10642#3 ------------------------------------------------------------ consensus_10642#0 GCGGCGGCGGCGAGGGATTTCGCCGGCCAGCTAGCCCCATCCTCAACAAAATCGAGGGGT 120 consensus_10642#2 ------------------------------------------------------------ consensus_10642#1 ------------------------------------------------------------ consensus_10642#3 ------------------------------------------------------------ consensus_10642#0 CGGTTGCTCTCCCGGTGGAAGAGCCCCATGGCCTCCGCCACCGCCCCGCAGCCTGTGTCC 180 consensus_10642#2 ------------------------------------------------------------ consensus_10642#1 ------------------------------------------------------------ consensus_10642#3 ------------------------------------------------------------ consensus_10642#0 TCTCCATCCGCCGCAGCCGGCGCCGCGTCGAACAACCCCCACAAGCGCAAGAAGCCGGCG 240 consensus_10642#2 ------------------------------------------------------------ consensus_10642#1 ------------------------------------------------------------ consensus_10642#3 ------------------------------------------------------------ consensus_10642#0 GCGAGGGGGAAGGGGAAGGGCAAGGGAAAGGGCCGCCTCGCCAAGACGCCCAGGCGCTCC 300 consensus_10642#2 ------------------------------------------------------------ consensus_10642#1 ------------------------------------------------------------ consensus_10642#3 ------------------------------------------------------------ consensus_10642#0 GATGACCCCGGCGACCTCCCCCGCCGCCGCAGCAAGCCCAGCGACAGGTTCCTCAAGCTG 360 consensus_10642#2 ------------------------------------------------------------ consensus_10642#1 ------------------------------------------------------------ consensus_10642#3 ------------------------------------------------------------ consensus_10642#0 CTCCGCAAGCGCGCCCGCGACTACAACTCCGACGACTCCGACGACGAGGAGCGCCTCTCG 420 consensus_10642#2 ------------------------------------------------------------ consensus_10642#1 ------------------------------------------------------------ consensus_10642#3 ------------------------------------------------------------ consensus_10642#0 GATGAGGACGAGGAGGAGGAGGGGGCTTCCGGCTCCGGTGACGACGAGGCCGCCGGCGCG 480 consensus_10642#2 ------------------------------------------------------------ consensus_10642#1 ------------------------------------------------------------ consensus_10642#3 ------------------------------------------------------------ consensus_10642#0 GTGACCAGGTTCGAGCAGGGGTGCCGCGCGTTCCGCGTCGCCTTCACGAAGATCATGGCC 540 consensus_10642#2 ------------------------------------------------------------ consensus_10642#1 ----------------------------------------------------------TC 2 consensus_10642#3 ------------------------------------------------------------ consensus_10642#0 AAGAAGCTCCCCGACGACCCACTGGGTCCAATTCTTTCGGCGCACAAGAAGCTGGTCGCC 600 consensus_10642#2 ------------------------------------------------------------ consensus_10642#1 TTCAAACACATCTATTTACAGTTGGAGGGATTTCATATGGAGGG-AGTGTTCAACAATGA 61 consensus_10642#3 ------------------------------------------------------------ consensus_10642#0 GCCAAGTTGGCCGAGGACGCAGAAGAACACAAGCCCAAGGGAGAAGGCCGCAGGGAAAAG 660 consensus_10642#2 ------------------------------------------------------------ consensus_10642#1 GTAAATCTGACATCATTTAAANAAGCACCCGTATCCTCAGCATTAGCATTAAAGAATATA 121 consensus_10642#3 ------------------------------------------------------------ consensus_10642#0 CGCATGGCTGCAGAGAAGGGCCATGTCATTCCCACAAATCATTTAGATAGTAAAGAGAAG 720 consensus_10642#2 ------------------------------------------------------------ consensus_10642#1 CGTGTTAAGAATATACAAAGTTGGACTGTGTTTCTGTAT-GTGTACCTGTGATTCATCAG 180 consensus_10642#3 ------------------------------------------------------------ consensus_10642#0 GAGCTCATCAAAATCGCAACCCAAGGGGTCGTCAGGTTGTTCAACTCGGTAAGCAAGGCG 780 consensus_10642#2 ------------------------------------------------------------ consensus_10642#1 ATATATAATAAACTATCTACT-----GTTTCTCATGCCATA-AGTTAACTAAATCAGATG 234 consensus_10642#3 ------------------------------------------------------------ consensus_10642#0 CAGAATTGTCGGAAAGGTTTGAACCCATCAAGGAGTAAAGACGCCAAAGTGTTGGCAAAA 840 consensus_10642#2 ------------------------------------------------------------ consensus_10642#1 TAAAATGATTTAACCTGTGACAAGTTGGCTGCTCTTGTGCGCCATATCTGAATTTCATTT 294 consensus_10642#3 ----------------------------------------ACGCCAAAGTGTTGGCAAAA 20 consensus_10642#0 GAAA-CAAAGCAGGCCTTCCTCACAGAATTAAGCAAA-ACATCTAACCAAAGTCAAAAGG 898 consensus_10642#2 ---------GCAGGCCTTCCTCACAGAATTAAGCAAA-ACATCTANCCAAAGTCAAAAGG 50 consensus_10642#1 NATTTCGGAACATATTTTATACATATTTTTATGTATTTGGAACTTAAGAAGCTCTT--GG 352 consensus_10642#3 GAAA-CAAAGCAGGCCTTCCTCACAGAATTAAGCAAA-ACATCTAACCAAAGTCAAAAGG 78 ** ** ** * *** * * * ** ** ** ** consensus_10642#0 GCAAGGCATCTTCC-AACTTTTCTAAGAACAATAGCAAAGACGAAGACGAA-CCTGGGTG 956 consensus_10642#2 GCAAGGCATCTTCCCAACTTTTCTAAGANCAATAGCAAAGACGAAGACGAA-CCTGGGNG 109 consensus_10642#1 ATATTTCTCACACTTGATGTGCTTCAGAACAATAGCAAAGACGAAGACGAAACCTGGGTG 412 consensus_10642#3 GCAAGGCATCTTCC-AACTTTTCTAAG-GTAGCTATGATAATTCTCTCTTTACTCAAAAA 136 * * * * * * ** * * * * * consensus_10642#0 GGCACCCCTACGCGAGACATACATGCTTGGGTCGAAATTGAAAGATTGGGATAAAATGCA 1016 consensus_10642#2 GGCNCCCCTACGCGAGACATACATGCTTGGGTCGAAATTGAAAGATTGGGATAAAATGCA 169 consensus_10642#1 GGCACCCCTACGCGAGACATACATGCTTGGGTCGAAATTGAAAGATTGGGATAAAATGCA 472 consensus_10642#3 CACTCCATTTCATTTTATAGACTTCTGTTGCTAAGTATTTGTGTTGTATCTTCAAATTCA 196 * ** * * * * ** * * * * *** * * **** ** consensus_10642#0 GACCTCTGATGTTGTGAATGAACAAACGGAGATCCCTTTGGACGACTCTTCTGATGAGGA 1076 consensus_10642#2 GACCTCTGATGTTGTGAATGAACAAACGGAGATCCCTTTGGACGACTCTTCTGATGAGGA 229 consensus_10642#1 GACCTCTGATGTTGTGAATGAACAAACGGAGATCCCTTTGGACGACTCTTCTGATGAGGA 532 consensus_10642#3 AATTAGTTGT-TCTCAGAGGCATATCTGGTGGAACTGTTGTNCAAAT-TAGTTATGCNAA 254 * * * * * * * * ** * * *** * * * * * *** * consensus_10642#0 ATAGGCAATAGATTCA-CCTGAGTGAGTTGAAGCAGCATTTGGGACAATGTTCCTGTGCT 1135 consensus_10642#2 ATAGGCAATAGATTCA-CCTGAGTGAGTTGAAGCAGCATTTGGGACAATGTTCCTGTGCT 288 consensus_10642#1 ATAGGCAATAGATTCA-CCTGAGTGAGTTGAAGCAGCATTTGGGACAATGTTCCTGTGCT 591 consensus_10642#3 TTTTGATGCAATTACAGCCTCAATAAATCCAAACGGGACACTG--CAATACAAGT----- 307 * * * * ** *** * * * * ** * * * * **** * consensus_10642#0 TTGAAGTCGTGTTCTTGTTATTGACATTGTAAAGCGATATTTGGTTCAAATTTGCAAGTT 1195 consensus_10642#2 TTGAAGTCGTGTTCTTGTTATTGACNTTGTAAAGCGATATTTGGTTCAAATTTGCAAGTT 348 consensus_10642#1 TTGAAGTCGTGTTCTTGTTATTGACATTGTAAAGCGATATTTGGTTCAAATTTGCAAGTT 651 consensus_10642#3 ------------------------------------------------------------ consensus_10642#0 AAGTTTTCTTATCATTGTTTCATGCATTGATGAATGTGATGGCTAATGCACGGCACGGG 1254 consensus_10642#2 AAGTTTTCTTATCAAAAAAAAAAAA---------------------------------- 373 consensus_10642#1 AAGTTTTCTTATCATTGTTTCATGCAAAAAA---------------------------- 682 consensus_10642#3 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||