cluster # 10646

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Oryza sativa
cluster # 10646 cluster # 10646 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10646#0 length = 755 sequences # 6

consensus_10646#1 length = 427 sequences # 1

consensusID : consensus_10646#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 755
fasta sequence

                              [AGCCATTCGGCGTTCTTTTTTCNTCTTGCCATTAATTANTTATTAACCCGGCTAAGGAAATAAATAAAGTTTAGTAGCACTATATATGTAGGAGTANATATAGCTAGGAGATAGAGAGTCCAGCGTTAAATAAACTGAGGAGAGCTTGGATTTCTCATCTCCATTATCTTGCATTCTTGTTCTTGGTTTGCATCTCTTCTTGCTCTTTGGAGGATTTACTACTATTGAGTAGTAGTGATCATGAGCTACCAAGGT-CCTCCTCCCGGCACTG-CAGCGTACCCGCCACCGGGGACGGGGTACCCACCGCCGGCGTACGGCGCGCCGCCGCCAGTCGCCGCCGACTACGGCGGGTATCAGCAGCAGCAGCCGCCGCCGCCGCCGCAGGACTCGCAGAGCCGCGGCGACGGCTTCTTGAAAGGATGTTGTGCTGCTCT---CTGCTGCTGCTGCCTGCTCGACATGTGCTTCTGATGAGAAGATGGCATCAAGGATGATGTGATACTCTACTTATAGAGCAGCTTGTGATCGTCTTTTCACATCATTTGTGCTGTGTCATGATCGAGATTTTTTAAGTATGTGGTGAGATGTGTGCATCTAGTATTATGTAGTTACTGTTCTTGGATCATTTGGATTTCATGTGTTGTCAAATTCAAAAGTGGATCCA-TTTTGTATCATTCATCGTAATCTGGGACACTTCTGTTTATCAATGATTTCGATTTTAGTACTATACGAAT-CACCCTAAATTTTATAAAAAAAAA]

[+] EMBL AU085753             [AGCCATTCGGCGTTCTTTTTTCNTCTTGCCATTAATTANTTATTAACCCGGCTAAGGAAATAAATAAAGTTTAGTAGCACTATATATGTAGGAGTANATATAGCTAGGAGATAGAGAGTCCAGCGTTAAATAAACTGAGGAGAGCTTGGATTTCTCATCTCCATTATCTTGCATTCTTGTTCTTGGTTTGCATCTCTTCTTGCTCTTTGGAGGATTTACTACTATTGAGTAGTAGTGATCATGAGCTACCAAGGTCCCTCCTCCCGGCACTGCCAGCGTACCCGCCACCGGGGACGGGGTACCCACCGCCGGCGTACGGCGCGCCGCCGCCAGTCGCCGCCGACTACGGCGGGTATCAGCAGCAGCAGCCGCCGCCGCCGCCGCAGGACTCGCAGAGCCGCGGCGACGGCTTCTTGAAAGGATGTTGTGCTGCTCT   CTGCTGCTGCTNCCTGCTCGACATGTGCTTCTGATGAGAAGATGGCATCAAGGATGATGTGATACTCTACTTATAGAGCAGCTTGTGATCGTCTTTTCACATCATTTGTGCTGTGTCATGATCGAGATTTTTTAAGTATGTGGTGAGATGTGTGCATCTAGTATTATGTAGTTACTGTTCTTGGATCATTTGGATTTCATGTGTTGTCAAAAAAAAAAaaaaaaaa                                                                                                 ]
[+] EMBL AK101227             [                                                                                                                       CCAGCGTTAAATAAACTGAGGAGAGCTTGGATTTCTCATCTCCATTATCTTGCATTCTTGTTCTTGGTTTGCATCTCTTCTTGCTCTTTGGAGGATTTACTACTATTGAGTAGTAGTGATCATGAGCTACCAAGGT CCTCCTCCCGGCACTG CAGCGTACCCGCCACCGGGGACGGGGTACCCACCGCCGGCGTACGGCGCGCCGCCGCCAGTCGCCGCCGACTACGGCGGGTATCAGCAGCAGCAGCCGCCGCCGCCGCCGCAGGACTCGCAGAGCCGCGGCGACGGCTTCTTGAAAGGATGTTGTGCTGCTCTCTGCTGCTGCTGCTGCCTGCTCGACATGTGCTTCTGATGAGAAGATGGCATCAAGGATGATGTGATACTCTACTTATTGAGCAGCTTGTGATCGTCTTTTCACATCATTTGTGCTGTGTCATGATCGAGATTTTTTAAGTATGTGGTGAGATGTGTGCATCTAGTATTATGTAGTTACTGTTCTTGGATCATTTGGATTTCATGTGTTGTCAAATTCAAAAGTGGATCCA TTTTGTATCATTCATCGTAATCTGGGACACTTCTGTTTATCAATGATTTCGA                                           ]
[+] EMBL AK063824             [                                                                                                                                        GAGGAGAGCTTGGATTTCTCATCTCCATTATCTTGCATTCTTGTTCTTGGTTTGCATCTCTTCTTGCTCTTTGGAGGATTTACTACTATTGAGTAGTAGTGATCATGAGCTACCAAGGT CCTCCTCCCGGCACTG CAGCGTACCCGCCACCGGGGACGGGGTACCCACCGCCGGCGTACGGCGCGCCGCCGCCAGTCGCCGCCGACTACGGCGGGTATCAGCAGCAGCAGCCGCCGCCGCCGCCGCAGGACTCGCAGAGCCGCGGCGACGGCTTCTTGAAAGGATGTTGTGCTGCTCT   CTGCTGCTGCTGCCTGCTCGACATGTGCTTCTGATGAGAAGATGGCATCAAGGATGATGTGATACTCTACTTATAGAGCAGCTTGTGATCGTCTTTTCACATCATTTGTGCTGTGTCATGATCGAGATTTTTTAAGTATGTGGTGAGATGTGTGCATCTAGTATTATGTAGTTACTGTTCTTGGATCATTTGGATTTCATGTGTTGTCAAATTCAAAAGTGGATCCA TTTTGTATCATTCATCGTAATCTGGGACACTTCTGTTTATCAATGATTTCGATTTTAGTACTATACGAAT CACCCTAAATTTTAT         ]
[+] EMBL CA755679             [                                                                                                                                                        TCTCATCTCCATTATCTTGCATTCTTGTTCTTGGTTTGCATCTCTTCTTGCTCTTTGGAGGATTTACTACTATTGAGTAGTAGTGATCATGAGCTACCAAGGT CCTCCTCCCGGCACTG CAGCGTACCCGCCACCGGGGACGGGGTACCCACCGCCGGCGTACGGCGCGCCGCCGCCAGTCGCCGCCGACTACGGCGGGTATCAGCAGCAGCAGCCGCCGCCGCCGCCGCAGGACTCGCAGAGCCGCGGCGACGGCTTCTTGAAAGGATGTTGTGCTGCTCT   CTGCTGCTGCTGCCTGCTCGACATGTGCTTCTGATGAGAAGATGGCATCAAGGATGATGTGATACTCTACTTATAGAGCAGCTTGTGATCGTCTTTTCACATCATTTGTGCTGTGTCATGATCGAGATTTTTTAAGTATGTGGTGAGATGTGTGCATCTAGTATTATGTAGTTACTGTTCTTGGATCATTTGGATTTCATGTGTTGTCAAATTCAAAAGTGGATCCATTTTTGTATCATTCATCGTAATCTGGGACACTTCTGTTTATCAATGATTTCGATTTTAGTACTATCCGAATCCCCCCTAAAAAAAAAAAAAAAAAA]
[+] EMBL OSC2991              [                                                                                                                                                            ATCTCCATTATCTTGCATTCTTGTTCTTGGTTTGCATCTCTTCTTGCTCTTTGGAGGATTTACTACTATTGAGTAGTAGTGATCATGAGCTACCAAGGT CCTCCTCCCGGCACTG CAGCGTACCCGCCACCGGGGACGGGGTACCCACCGCCGGCGTACGG GCGCCGCCGCCAGTCGCCGCCGACTACGGGGGTTATCAGCAGCAGCAGCCGCCGCCGCCGCCGCAGGACTCGCAGAGCCGCGGCGACGGCTTCTTGAAAGGATGTTGTGCTGCTCT   CTGCTGCTGCTGCCTGCTCGANATGTGCTTCTGATGAGAAGATGGCATCAAGGATGATGTGATACTCTACTTATAGAGCAGNTTGTGATCGTCTTTTCACATCATTTGTGCTGTGTCATGATCG GATTTTT                                                                                                                                                                                               ]
[+] EMBL AU098326             [                                                                                                                                                             TCTCCATTATCTTGCATTCTTGTTCTTGGTTTGCATCTCTTCTTGCTCTTTGGAGGATTTACTACTATTGAGTAGTAGTGATCATGAGCTACCAAGGT CCTCCTCCCGGCACTG CAGCGTACCCGCCACCGGGGACGGGGTACCCACCGCCGGCGTACGGCGCGCCGCCGCCAGTCGCCGCCGACTACGGCGGGTATCAGCAGCAGCAGCCGCCGCCGCCGCCGCAGGACTCGCAGAGCCGCGGCGACGGCTTCTTGAAAGGATGTTGTGCTGCTCT   CTGCTGCTGCTGCCTGCTCGACATGTGCTTCTGATGAGAAGATGGCATCAAGGATGATGTGATACTCTACTTATAGAGCAGCTTGTGATCGTCTTTTCACATCATTTGTGCTGTGTCATGATCGAGATTTTTTAAGTATGTGGTGAGATGTGTGCATCTAGTATTATGTAGTTACTGTTCTTGGATCATTTGGATTTCATGTGTTGTCAAATTCAAAAGTGGATCCA TTTTGTATCAaaaaaaaa                                                                             ]




>consensus_10646#0
AGCCATTCGGCGTTCTTTTTTCNTCTTGCCATTAATTANTTATTAACCCGGCTAAGGAAA
TAAATAAAGTTTAGTAGCACTATATATGTAGGAGTANATATAGCTAGGAGATAGAGAGTC
CAGCGTTAAATAAACTGAGGAGAGCTTGGATTTCTCATCTCCATTATCTTGCATTCTTGT
TCTTGGTTTGCATCTCTTCTTGCTCTTTGGAGGATTTACTACTATTGAGTAGTAGTGATC
ATGAGCTACCAAGGTCCTCCTCCCGGCACTGCAGCGTACCCGCCACCGGGGACGGGGTAC
CCACCGCCGGCGTACGGCGCGCCGCCGCCAGTCGCCGCCGACTACGGCGGGTATCAGCAG
CAGCAGCCGCCGCCGCCGCCGCAGGACTCGCAGAGCCGCGGCGACGGCTTCTTGAAAGGA
TGTTGTGCTGCTCTCTGCTGCTGCTGCCTGCTCGACATGTGCTTCTGATGAGAAGATGGC
ATCAAGGATGATGTGATACTCTACTTATAGAGCAGCTTGTGATCGTCTTTTCACATCATT
TGTGCTGTGTCATGATCGAGATTTTTTAAGTATGTGGTGAGATGTGTGCATCTAGTATTA
TGTAGTTACTGTTCTTGGATCATTTGGATTTCATGTGTTGTCAAATTCAAAAGTGGATCC
ATTTTGTATCATTCATCGTAATCTGGGACACTTCTGTTTATCAATGATTTCGATTTTAGT
ACTATACGAATCACCCTAAATTTTATAAAAAAAAA

consensusID : consensus_10646#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence

                              [AGCCATTCGGGTNTCTTTTTCTTCTTGTCATTAATTAATTATTAACGCGGCTAAGGAAATAAATAAAGTTTAGTAGCACTATATATGTAGGAGTATATATAGCTAGGAGATAGAGAGTCCAGCGTTAAATAAACTGAGGAGAGCTTGGATTTCTCATCTCCATTATCTTGCATTCTTGTTCTTGGTTTGCATCTCTTCTTGCTCTTTGGAGGATTTACTACTATTGAGTAGTAGTGATCATGAGCTACCAAGGTCCTCCTCCCGGCACTGCAGCGTACCCGCCACCGGGGACGGGGTACCACCGCCGGCGTACGNCGGCCGNCCCAAGTTCCGCCGCCCGACTANGGGTTAATTCAAGCAGCAGCAGCCGCCGCCGCCGCCGAAGACTTNGAAGACCGCGGAACCGTTTTCTTTTAAAAGGATGTTT]

[+] EMBL C27599               [AGCCATTCGGGTNTCTTTTTCTTCTTGTCATTAATTAATTATTAACGCGGCTAAGGAAATAAATAAAGTTTAGTAGCACTATATATGTAGGAGTATATATAGCTAGGAGATAGAGAGTCCAGCGTTAAATAAACTGAGGAGAGCTTGGATTTCTCATCTCCATTATCTTGCATTCTTGTTCTTGGTTTGCATCTCTTCTTGCTCTTTGGAGGATTTACTACTATTGAGTAGTAGTGATCATGAGCTACCAAGGTCCTCCTCCCGGCACTGCAGCGTACCCGCCACCGGGGACGGGGTACCACCGCCGGCGTACGNCGGCCGNCCCAAGTTCCGCCGCCCGACTANGGGTTAATTCAAGCAGCAGCAGCCGCCGCCGCCGCCGAAGACTTNGAAGACCGCGGAACCGTTTTCTTTTAAAAGGATGTTT]




>consensus_10646#1
AGCCATTCGGGTNTCTTTTTCTTCTTGTCATTAATTAATTATTAACGCGGCTAAGGAAAT
AAATAAAGTTTAGTAGCACTATATATGTAGGAGTATATATAGCTAGGAGATAGAGAGTCC
AGCGTTAAATAAACTGAGGAGAGCTTGGATTTCTCATCTCCATTATCTTGCATTCTTGTT
CTTGGTTTGCATCTCTTCTTGCTCTTTGGAGGATTTACTACTATTGAGTAGTAGTGATCA
TGAGCTACCAAGGTCCTCCTCCCGGCACTGCAGCGTACCCGCCACCGGGGACGGGGTACC
ACCGCCGGCGTACGNCGGCCGNCCCAAGTTCCGCCGCCCGACTANGGGTTAATTCAAGCA
GCAGCAGCCGCCGCCGCCGCCGAAGACTTNGAAGACCGCGGAACCGTTTTCTTTTAAAAG
GATGTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10646#0      AGCCATTCGGCGTTCTTTTTTCNTCTTGCCATTAATTANTTATTAACCCGGCTAAGGAAA 60
consensus_10646#1      AGCCATTCGG-GTNTCTTTTTCTTCTTGTCATTAATTAATTATTAACGCGGCTAAGGAAA 59
                       ********** **   ****** ***** ********* ******** ************

consensus_10646#0      TAAATAAAGTTTAGTAGCACTATATATGTAGGAGTANATATAGCTAGGAGATAGAGAGTC 120
consensus_10646#1      TAAATAAAGTTTAGTAGCACTATATATGTAGGAGTATATATAGCTAGGAGATAGAGAGTC 119
                       ************************************ ***********************

consensus_10646#0      CAGCGTTAAATAAACTGAGGAGAGCTTGGATTTCTCATCTCCATTATCTTGCATTCTTGT 180
consensus_10646#1      CAGCGTTAAATAAACTGAGGAGAGCTTGGATTTCTCATCTCCATTATCTTGCATTCTTGT 179
                       ************************************************************

consensus_10646#0      TCTTGGTTTGCATCTCTTCTTGCTCTTTGGAGGATTTACTACTATTGAGTAGTAGTGATC 240
consensus_10646#1      TCTTGGTTTGCATCTCTTCTTGCTCTTTGGAGGATTTACTACTATTGAGTAGTAGTGATC 239
                       ************************************************************

consensus_10646#0      ATGAGCTACCAAGGTCCTCCTCCCGGCACTGCAGCGTACCCGCCACCGGGGACGGGGTAC 300
consensus_10646#1      ATGAGCTACCAAGGTCCTCCTCCCGGCACTGCAGCGTACCCGCCACCGGGGACGGGGTAC 299
                       ************************************************************

consensus_10646#0      CCACCGCCGGCGTACGGCGCGCCGCCGCCAGT--CGCCGCC-GACTACGG-CGGGTATCA 356
consensus_10646#1      C-ACCGCCGGCGTACGNCG-GCCGNCCCAAGTTCCGCCGCCCGACTANGGGTTAATTCAA 357
                       * ************** ** **** * * ***  ******* ***** **     *   *

consensus_10646#0      GCAGCAGCAGCCGCCGCCGCCGCCGCAGGACTCGCAGAGCCGCGGCGACGGCTTCTT--G 414
consensus_10646#1      GCAGCAGCAGCCGCCGCCGCCGCCG-AAGACTTNGAAGACCGCGGAACCGTTTTCTTTTA 416
                       ************************* * ****   *   ******   **  *****   

consensus_10646#0      AAAGGATGTTGTGCTGCTCTCTGCTGCTGCTGCCTGCTCGACATGTGCTTCTGATGAGAA 474
consensus_10646#1      AAAGGATGTTT------------------------------------------------- 427
                       **********                                                  

consensus_10646#0      GATGGCATCAAGGATGATGTGATACTCTACTTATAGAGCAGCTTGTGATCGTCTTTTCAC 534
consensus_10646#1      ------------------------------------------------------------
                                                                                   

consensus_10646#0      ATCATTTGTGCTGTGTCATGATCGAGATTTTTTAAGTATGTGGTGAGATGTGTGCATCTA 594
consensus_10646#1      ------------------------------------------------------------
                                                                                   

consensus_10646#0      GTATTATGTAGTTACTGTTCTTGGATCATTTGGATTTCATGTGTTGTCAAATTCAAAAGT 654
consensus_10646#1      ------------------------------------------------------------
                                                                                   

consensus_10646#0      GGATCCATTTTGTATCATTCATCGTAATCTGGGACACTTCTGTTTATCAATGATTTCGAT 714
consensus_10646#1      ------------------------------------------------------------
                                                                                   

consensus_10646#0      TTTAGTACTATACGAATCACCCTAAATTTTATAAAAAAAAA 755
consensus_10646#1      -----------------------------------------