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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10647#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1091 fasta sequence
[GGGTTTGGCATTGGGGGCGTCGCAGGAGCCTTGCCCTTGGTCCTCCGCCGCACTCGCACCTGCACCCCTCCCCCGCCGATGGCGATGACCCCACTCCACCACACCTGCTCCTTCTTCTTCCGACCACAACCCTCTCCTAGTCTCTCCCACTCCCCATGCGCCGCCGCCGCCGACGACGACTTCTTCACCGTCGACTACGACCCAGAGGAGGAGAAAGAAGAAGACGAGGAGGGTTCTCCGTGGGAGG-GCGCGGTGGTGTACCGGCGGGACGCGTCGGTTCACCACCTCGAGTACGCCACCACACTGGAGCGCCTCGGCCTTGGCGACCTCTCCTCCACTCACTCTCGGGCGCGCGCCGCCACCATGGGAATCCTCATCCTCTCCTCCACCAACCTTACCGGTACCAAGGACGATGACACCCCGGTGCTCGTCTCCCTCGACGTTGCCAGGCGCCGCGGCCGCCTCCGCCTCGACGGCATCGTCCGCACTGTCATCACCCTCGGTTGCTATGGGTGTGCTGAGCCAGCGCCTCAAGGTATATTTGCCAATTTTTCCCTCTTACTGACCGAAGACAGAGTAGAGGAACCTGATGTGGTTGATCTCGGCACGATATTTGAAGAAGAACAAACCAAAGCTCCTTCGCTAACCGGAAGCCAAGAAGATGGAGACGATGAAGATATAGATTGGGATGACCGGCTGCATTTCCCAGCTGGAGAAAAGGAGATTGATATCTCAAAGCACATCAGGGACATCATTCACTTGGAGATCACGCTCGATGCCCTGTGCAGTCCCACCTGCAAAGGTCTCTGCCTTGGCTGCGGCGAAAACCTCAACACCAGCAGCTGCAGCTGCAACGCAGAGAAACAGCAGGCCAAGAATGTTCAGCGGCGAGGGCCTCTCAAAGACCTGTTGAAGCCACTGCAAAGGTGATGTAAATACCGCACGGCAGATTTTATACGGTGATATGTATGTAATACTTTGTAGGAGTATTCGAAGATAATATGTTTAGATGATAAATTTCTTCTCGTCCTCCTTTTTGAGCTCATCTCCTACTCTACTTTTTAAGACGGAAAAATAGACGCCATGACTTG]
[+] EMBL AK098955 [GGGTTTGGCATTGGGGGCGTCGCAGGAGCCTTGCCCTTGGTCCTCCGCCGCACTCGCACCTGCACCCCTCCCCCGCCGATGGCGATGACCCCACTCCACCACACCTGCTCCTTCTTCTTCCGACCACAACCCTCTCCTAGTCTCTCCCACTCCCCATGCGCCGCCGCCGCCGACGACGACTTCTTCACCGTCGACTACGACCCAGAGGAGGAGAAAGAAGAAGACGAGGAGGGTTCTCCGTGGGAGG GCGCGGTGGTGTACCGGCGGGACGCGTCGGTTCACCACCTCGAGTACGCCACCACACTGGAGCGCCTCGGCCTTGGCGACCTCTCCTCCACTCACTCTCGGGCGCGCGCCGCCACCATGGGAATCCTCATCCTCTCCTCCACCAACCTTACCGGTACCAAGGACGATGACACCCCGGTGCTCGTCTCCCTCGACGTTGCCAGGCGCCGCGGCCGCCTCCGCCTCGACGGCATCGTCCGCACTGTCATCACCCTCGGTTGCTATGGGTGTGCTGAGCCAGCGCCTCAAGGTATATTTGCCAATTTTTCCCTCTTACTGACCGAAGACAGAGTAGAGGAACCTGATGTGGTTGATCTCGGCACGATATTTGAAGAAGAACAAACCAAAGCTCCTTCGCTAACCGGAAGCCAAGAAGATGGAGACGATGAAGATATAGATTGGGATGACCGGCTGCATTTCCCAGCTGGAGAAAAGGAGATTGATATCTCAAAGCACATCAGGGACATCATTCACTTGGAGATCACGCTCGATGCCCTGTGCAGTCCCACCTGCAAAGGTCTCTGCCTTGGCTGCGGCGAAAACCTCAACACCAGCAGCTGCAGCTGCAACGCAGAGAAACAGCAGGCCAAGAATGTTCAGCGGCGAGGGCCTCTCAAAGACCTGTTGAAGCCACTGCAAAGGTGATGTAAATACCGCACGGCAGATTTTATACGGTGATATGTATGTAATACTTTGTAGGAGTATTCGAAGATAATATGTTTAGATGATAAATTTCTTCTCGTCCTCCT ]
[+] EMBL CF334411 [ TTGGCATTGGGGGCGTCGCAGGAGCCTTGCCCTTGGTCCTCCGCCGCACTCGCACCTGCACCCCTCCCCCGCCGATGGCGATGACCCCACTCCACCACACCTGCTCCTTCTTCTTCCGACCACAACCCTCTCCTAGTCTCTCCCACTCCCCATGCGCCGCCGCCGCCGACGACGACTTCTTCACCGTCGACTACGACCCAGAGGAGGAGAAAGAAGAAGACGAGGAGGGTTCTCCGTGGGAGGCGCGC GTGGTGTACCGGCGGGACGCGTCGGTTCACCACCTCGAGTACGCCACCACACTGGAGCGCCTCGGCCTTGGCGACCTCTCCTCCACTCACTCTCGGGCGCGCGCCGCCACCATGGGAATCCTCATCCTCTCCTCCACCAACCTTACCGGTACCAAGGACGATGACACCCCGGTGCTCGTCTCCCTCGACG ]
[+] EMBL AK061847 [ ATTGGGGGCGTCGCAGGAGCCTTGCCCTTGGTCCTCCGCCGCACTCGCACCTGCACCCCTCCCCCGCCGATGGCGATGACCCCACTCCACCACACCTGCTCCTTCTTCTTCCGACCACAACCCTCTCCTAGTCTCTCCCACTCCCCATGCGCCGCCGCCGCCGACGACGACTTCTTCACCGTCGACTACGACCCAGAGGAGGAGAAAGAAGAAGACGAGGAGGGTTCTCCGTGGGAGG GCGCGGTGGTGTACCGGCGGGACGCGTCGGTTCACCACCTCGAGTACGCCACCACACTGGAGCGCCTCGGCCTTGGCGACCTCTCCTCCACTCACTCTCGGGCGCGCGCCGCCACCATGGGAATCCTCATCCTCTCCTCCACCAACCTTACCGGTACCAAGGACGATGACACCCCGGTGCTCGTCTCCCTCGACGTTGCCAGGCGCCGCGGCCGCCTCCGCCTCGACGGCATCGTCCGCACTGTCATCACCCTCGGTTGCTATGGGTGTGCTGAGCCAGCGCCTCAAGGTATATTTGCCAATTTTTCCCTCTTACTGACCGAAGACAGAGTAGAGGAACCTGATGTGGTTGATCTCGGCACGATATTTGAAGAAGAACAAACCAAAGCTCCTTCGCTAACCGGAAGCCAAGAAGATGGAGACGATGAAGATATAGATTGGGATGACCGGCTGCATTTCCCAGCTGGAGAAAAGGAGATTGATATCTCAAAGCACATCAGGGACATCATTCACTTGGAGATCACGCTCGATGCCCTGTGCAGTCCCACCTGCAAAGGTCTCTGCCTTGGCTGCGGCGAAAACCTCAACACCAGCAGCTGCAGCTGCAACGCAGAGAAACAGCAGGCCAAGAATGTTCAGCGGCGAGGGCCTCTCAAAGACCTGTTGAAGCCACTGCAAAGGTGATGTAAACACCGCACGGCAGATTTTATACGGTGATATGTATGTAATACTTTGTAGGAGTATTCGAAGATAATATGTTTAGATGATAAACTTCTTCTCGTCCTCCTTTTTGAGCTCATCTCCTACTCTACTTTTTAAGACGGAAAAATAGACGCCATGACTTG]
consensusID : consensus_10647#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 696 fasta sequence
[GCATCGTCCGCACTGTCATCACCCTCGGTTGCTATGGTTGTGCTGAGCCAGCGCCTCAAGGTATATTTGCGAATTTTTCCCTGTTACTGACCGAAGGCAGAGTAGAGGAACCTGATGTGGTTGATCTCGGCACGATATTTGAAGAAGA-ACAAACCAAAGCTCCTGTGCTAACTGGAAGCCAAGAAGATGGAGACGA-CAAAGATATAGATTGGGATGACCGGTTGCATTTCCCAGCTGGAGAAAAGGAGATTGATATCTCGAAGCACATCAGGGACATCATTCACTTAGAGATCACGCTCGATGCCCTGTGCAGTCCCACCTGCAAAGGTCTCTGCGTTGGCTGCGGCGAAAATCTCAACACCAGCAGCTGCAGCTGCAACACAGAGAAACAGCAGGCTAAGGCTAAGAATGTTCAGCGGCGAGGGCCTCTC-AAAGACCTGTTGAAACCACTGCAAAGGTGATGTAAACACCGCACGGCAGATTTTAGACAGTGATATGTATGTAATACGCTGTAGCAGTATTCGAAGATAATATGTTTAGATGATAAATTTC-TTTTTTGAGCTCATATCCTACTGTAAGACGGAAAAATTGATGCCATGACGTGTCTGTTTGCGTGTGTTCGAGGTACCTGAATTCTGACATGCTATCGGAGGCATCGATTTGTAGGGTGACAGTTTTCTTGTGCCAAAAAAAAAA]
[-] EMBL CB652951 [GCATCGTCCGCACTGTCATCACCCTCGGTTGCTATGGTTGTGCTGAGCCAGCGCCTCAAGGTATATTTGCGAATTTTTCCCTGTTACTGACCGAAGGCAGAGTAGAGGAACCTGATGTGGTTGATCTCGGCACGATATTTGAAGAAGA ACAAACCAAAGCTCCTGTGCTAACTGGAAGCCAAGAAGATGGAGACGA CGAAGATATAGATTGGGATGACCGGTTGCATTTCCCAGCTGGAGAAAAGGAGGTTGATATCTCGAAGCACATCAGGGACATCATTCACTTAGAGATCACGCTCGATGCCCTGTGCAGTCCCACCTGCAAAGGTCTCTGCGTTGGCTGCGGCGAAAATCTCAACACCAGCAGCTGCAGCTGCAACACAGAGAAACAGCAGGCTAAGGCTAAGAATGTTCAGCGGCGAGGGCCTCTCAAAAGACCTGTTGAAACCACTGCAAAGGTGATGTAAACACCGCACGGCAGATTTTAGACAGTGATATGTATGTAATACGTTGTAGCAGTATTCGAAGATAATATGTTTAGATGATAAATTTCATTTTTTGAGCTCATATCCTACTGTAAGACGGAAAAATTGATGCCATGACGTGTCTGTTTGCGTGTGTTCGAGGTACCTGAATTCTGACATGCTATCGGAGGCAT ]
[+] EMBL BI812282 [ cCAGAGTAGAGGAACCTGATGTGGTTGATCTCGGCACGATATTTGAAGAAGAGACCAACC AAGCTCCTGTGCTAACCGGAAGCC AGAAGATGGAGACGACCAAAGATATAGATTGGGATGACCGGTTGCATTTCCCAGCTGGAGAAAAGGAGATTGATATCTCGAAGCACATCAGGGACATCATTCACTTAGAGATCACGCTCGATGCCCTGTGCAGTCCCACCTGCAAAGGTCTCTGCGTTGGCTGCGGCGAAAATCTC ACACCAGCAGCTGCAGCTGCAACACAGAGAAACAGCAGGCTAAGGCTAAGAATGTTCAGCGGCGAGGGCCTCTC AAAGACCTGTTGAAACCACTGCAAAGGTGATGTAAACACCGCACGGCAGATTTTAGACAGTGATATGTATGTAATACGCTGTAGCAGTATTCGAAGATAATATGTTTAGATGATAAATTTC TTTTTTGAGCTCATATCCTACTGTAAGACGGAAAAATTGATGCCATGACGTGTCTGTTTGCGTGTGTTCGAGGTACCTGAAaaaaa ]
[+] EMBL BQ907535 [ GGAGACGA CAAAGATATAGATTGGGATGACCGGTTGCATTTCCCAGCTGGAGAAAAGGAGATTGATATCTCGAAGCACATCAGGGACATCATTCACTTAGAGATCACGCTCGATGCCCTGTGCAGTCCCACCTGCAAAGGTCTCTGCGTTGGCTGCGGCGAAAATCTCAACACCAGCAGCTGCAGCTGCAACACAGAGAAACAGCAGGCTAAGGCTAAGAATGTTCAGCGGCGAGGGCCTCTC AAAGACCTGTTGAAACC CTGCAAAGGTGATGTAAACACCGCACGGCAGATTTTAGACAGTGATATGTATGTAATACGCTGTAGCAGTATTCGAAGATAATATGTTTAGATGATAAATTTC TTTTTTGAGCTCATATCCTACTGTAAGACGGAAAAATTGATGCCNTGACGTGTCTGTTTGCGTGTGTTCGAGGTACCTGAATTCTGACATGCTATCGGAGGCATCGATTTGTAGGGTGACAGTTTTCTTGTGCCAAAAAAAAAA]
consensusID : consensus_10647#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence
[CAAGGTATATTTGCCAATTTTTCCCTCTTACTGACCGAAGACAGAGTAGAGGAACCTGATGTGGTTGATCTCGGCACGATATTTGAAGAAGAACAAACCAAAGCTCCTTCGCTAACCGGAAGCCAAGAAGATGGAGACGATGAAGATATAGATTGGGATGACCGGCTGCATTTCCCAGCTGGAGAAAAGGAGATTGATATTTCAAAGCACATCAGGGACATCATTCACTTGGAGATCACGCTCGATGCCCTGTGCAGTCCCACCTGCAAAGGTTTTTGCCTTGGCTGCGGCAAAAACCTCAACACCAGCAGCTGCAGTTGCAACGCAGAGAAACAGCAGGCCAAGAATGTTCAGCGGCGAGGGCCTTTCAAAGACCTGTTGAAGCCCCTGCAAAGGTGATGTAAACCCCGCCCGGCAGATTTTATACGGTGATATGTATGTAATACTTTGTAGGAGTATTCGAAGAATAATATGTTTAGATGATAAATTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF334410 [CAAGGTATATTTGCCAATTTTTCCCTCTTACTGACCGAAGACAGAGTAGAGGAACCTGATGTGGTTGATCTCGGCACGATATTTGAAGAAGAACAAACCAAAGCTCCTTCGCTAACCGGAAGCCAAGAAGATGGAGACGATGAAGATATAGATTGGGATGACCGGCTGCATTTCCCAGCTGGAGAAAAGGAGATTGATATTTCAAAGCACATCAGGGACATCATTCACTTGGAGATCACGCTCGATGCCCTGTGCAGTCCCACCTGCAAAGGTTTTTGCCTTGGCTGCGGCAAAAACCTCAACACCAGCAGCTGCAGTTGCAACGCAGAGAAACAGCAGGCCAAGAATGTTCAGCGGCGAGGGCCTTTCAAAGACCTGTTGAAGCCCCTGCAAAGGTGATGTAAACCCCGCCCGGCAGATTTTATACGGTGATATGTATGTAATACTTTGTAGGAGTATTCGAAGAATAATATGTTTAGATGATAAATTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10647#0 GGGTTTGGCATTGGGGGCGTCGCAGGAGCCTTGCCCTTGGTCCTCCGCCGCACTCGCACC 60
consensus_10647#2 ------------------------------------------------------------
consensus_10647#1 ------------------------------------------------------------
consensus_10647#0 TGCACCCCTCCCCCGCCGATGGCGATGACCCCACTCCACCACACCTGCTCCTTCTTCTTC 120
consensus_10647#2 ------------------------------------------------------------
consensus_10647#1 ------------------------------------------------------------
consensus_10647#0 CGACCACAACCCTCTCCTAGTCTCTCCCACTCCCCATGCGCCGCCGCCGCCGACGACGAC 180
consensus_10647#2 ------------------------------------------------------------
consensus_10647#1 ------------------------------------------------------------
consensus_10647#0 TTCTTCACCGTCGACTACGACCCAGAGGAGGAGAAAGAAGAAGACGAGGAGGGTTCTCCG 240
consensus_10647#2 ------------------------------------------------------------
consensus_10647#1 ------------------------------------------------------------
consensus_10647#0 TGGGAGGGCGCGGTGGTGTACCGGCGGGACGCGTCGGTTCACCACCTCGAGTACGCCACC 300
consensus_10647#2 ------------------------------------------------------------
consensus_10647#1 ------------------------------------------------------------
consensus_10647#0 ACACTGGAGCGCCTCGGCCTTGGCGACCTCTCCTCCACTCACTCTCGGGCGCGCGCCGCC 360
consensus_10647#2 ------------------------------------------------------------
consensus_10647#1 ------------------------------------------------------------
consensus_10647#0 ACCATGGGAATCCTCATCCTCTCCTCCACCAACCTTACCGGTACCAAGGACGATGACACC 420
consensus_10647#2 ------------------------------------------------------------
consensus_10647#1 ------------------------------------------------------------
consensus_10647#0 CCGGTGCTCGTCTCCCTCGACGTTGCCAGGCGCCGCGGCCGCCTCCGCCTCGACGGCATC 480
consensus_10647#2 ------------------------------------------------------------
consensus_10647#1 -------------------------------------------------------GCATC 5
consensus_10647#0 GTCCGCACTGTCATCACCCTCGGTTGCTATGGGTGTGCTGAGCCAGCGCCTCAAGGTATA 540
consensus_10647#2 ---------------------------------------------------CAAGGTATA 9
consensus_10647#1 GTCCGCACTGTCATCACCCTCGGTTGCTATGGTTGTGCTGAGCCAGCGCCTCAAGGTATA 65
*********
consensus_10647#0 TTTGCCAATTTTTCCCTCTTACTGACCGAAGACAGAGTAGAGGAACCTGATGTGGTTGAT 600
consensus_10647#2 TTTGCCAATTTTTCCCTCTTACTGACCGAAGACAGAGTAGAGGAACCTGATGTGGTTGAT 69
consensus_10647#1 TTTGCGAATTTTTCCCTGTTACTGACCGAAGGCAGAGTAGAGGAACCTGATGTGGTTGAT 125
***** *********** ************* ****************************
consensus_10647#0 CTCGGCACGATATTTGAAGAAGAACAAACCAAAGCTCCTTCGCTAACCGGAAGCCAAGAA 660
consensus_10647#2 CTCGGCACGATATTTGAAGAAGAACAAACCAAAGCTCCTTCGCTAACCGGAAGCCAAGAA 129
consensus_10647#1 CTCGGCACGATATTTGAAGAAGAACAAACCAAAGCTCCTGTGCTAACTGGAAGCCAAGAA 185
*************************************** ****** ************
consensus_10647#0 GATGGAGACGATGAAGATATAGATTGGGATGACCGGCTGCATTTCCCAGCTGGAGAAAAG 720
consensus_10647#2 GATGGAGACGATGAAGATATAGATTGGGATGACCGGCTGCATTTCCCAGCTGGAGAAAAG 189
consensus_10647#1 GATGGAGACGACAAAGATATAGATTGGGATGACCGGTTGCATTTCCCAGCTGGAGAAAAG 245
*********** *********************** ***********************
consensus_10647#0 GAGATTGATATCTCAAAGCACATCAGGGACATCATTCACTTGGAGATCACGCTCGATGCC 780
consensus_10647#2 GAGATTGATATTTCAAAGCACATCAGGGACATCATTCACTTGGAGATCACGCTCGATGCC 249
consensus_10647#1 GAGATTGATATCTCGAAGCACATCAGGGACATCATTCACTTAGAGATCACGCTCGATGCC 305
*********** ** ************************** ******************
consensus_10647#0 CTGTGCAGTCCCACCTGCAAAGGTCTCTGCCTTGGCTGCGGCGAAAACCTCAACACCAGC 840
consensus_10647#2 CTGTGCAGTCCCACCTGCAAAGGTTTTTGCCTTGGCTGCGGCAAAAACCTCAACACCAGC 309
consensus_10647#1 CTGTGCAGTCCCACCTGCAAAGGTCTCTGCGTTGGCTGCGGCGAAAATCTCAACACCAGC 365
************************ * *** *********** **** ************
consensus_10647#0 AGCTGCAGCTGCAACGCAGAGAAACAGCAGGCCAAG------AATGTTCAGCGGCGAGGG 894
consensus_10647#2 AGCTGCAGTTGCAACGCAGAGAAACAGCAGGCCAAG------AATGTTCAGCGGCGAGGG 363
consensus_10647#1 AGCTGCAGCTGCAACACAGAGAAACAGCAGGCTAAGGCTAAGAATGTTCAGCGGCGAGGG 425
******** ****** **************** *** ******************
consensus_10647#0 CCTCTCAAAGACCTGTTGAAGCCACTGCAAAGGTGATGTAAATACCGCACGGCAGATTTT 954
consensus_10647#2 CCTTTCAAAGACCTGTTGAAGCCCCTGCAAAGGTGATGTAAACCCCGCCCGGCAGATTTT 423
consensus_10647#1 CCTCTCAAAGACCTGTTGAAACCACTGCAAAGGTGATGTAAACACCGCACGGCAGATTTT 485
*** **************** ** ****************** **** ***********
consensus_10647#0 ATACGGTGATATGTATGTAATACTTTGTAGGAGTATTCGAAGA-TAATATGTTTAGATGA 1013
consensus_10647#2 ATACGGTGATATGTATGTAATACTTTGTAGGAGTATTCGAAGAATAATATGTTTAGATGA 483
consensus_10647#1 AGACAGTGATATGTATGTAATACGCTGTAGCAGTATTCGAAGA-TAATATGTTTAGATGA 544
* ** ****************** ***** ************ ****************
consensus_10647#0 TAAATTTCTTCTCGTCCTCCTTTTTGAGCTCATCTCCTACTCTACTTTTTAAGACGGAAA 1073
consensus_10647#2 TAAATTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAA------------------------ 519
consensus_10647#1 TAAATTTCTT-----------TTTTGAGCTCATATCCTACTGTA-------AGACGGAAA 586
******* ** * *
consensus_10647#0 AATAGACGCCATGACTTG------------------------------------------ 1091
consensus_10647#2 ------------------------------------------------------------
consensus_10647#1 AATTGATGCCATGACGTGTCTGTTTGCGTGTGTTCGAGGTACCTGAATTCTGACATGCTA 646
consensus_10647#0 --------------------------------------------------
consensus_10647#2 --------------------------------------------------
consensus_10647#1 TCGGAGGCATCGATTTGTAGGGTGACAGTTTTCTTGTGCCAAAAAAAAAA 696
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||