cluster # 1065

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Oryza sativa
cluster # 1065 cluster # 1065 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1065#0 length = 442 sequences # 1

consensus_1065#1 length = 386 sequences # 1

consensusID : consensus_1065#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [CNGNCAATAAGATCGATCAAGGAAGAGACTGACAGAGTTAACCTGGAGATTGANGCTGCTGAGAGAGAGTATGATTTGANCCGTGCAGCTGAGCTCAAGTACGGAACACTTCTGTNGCTACAAAAACAGCTTGAAGAGGCTGAGAACAAACTCATGGAATTCCAGCAGTCAGGCAAGTCAATGCTTCGAGAAGAGGTGACTGATGTTGACATTGCTGAGATTGTTAGCAAGTGGGACTGGTATTCCAGTGTCAACCCTTCAACAATCTTAAAAGGAAAGCTACTGCTATTGGAAGTGTACTCCACAAGNGGGTTATTGCCCAGATATTCAGTTAAGCAATGGCTAATCAATCCGTCGTTTAGGGAAGCCTTAAGCCCTACCGTCCCTAGAAGTTAATGTTTTGGGGCCACAGGTTNGGGAAGCCCACTNGGGAAAAATNGCT]

[+] EMBL C28363               [CNGNCAATAAGATCGATCAAGGAAGAGACTGACAGAGTTAACCTGGAGATTGANGCTGCTGAGAGAGAGTATGATTTGANCCGTGCAGCTGAGCTCAAGTACGGAACACTTCTGTNGCTACAAAAACAGCTTGAAGAGGCTGAGAACAAACTCATGGAATTCCAGCAGTCAGGCAAGTCAATGCTTCGAGAAGAGGTGACTGATGTTGACATTGCTGAGATTGTTAGCAAGTGGGACTGGTATTCCAGTGTCAACCCTTCAACAATCTTAAAAGGAAAGCTACTGCTATTGGAAGTGTACTCCACAAGNGGGTTATTGCCCAGATATTCAGTTAAGCAATGGCTAATCAATCCGTCGTTTAGGGAAGCCTTAAGCCCTACCGTCCCTAGAAGTTAATGTTTTGGGGCCACAGGTTNGGGAAGCCCACTNGGGAAAAATNGCT]




>consensus_1065#0
CNGNCAATAAGATCGATCAAGGAAGAGACTGACAGAGTTAACCTGGAGATTGANGCTGCT
GAGAGAGAGTATGATTTGANCCGTGCAGCTGAGCTCAAGTACGGAACACTTCTGTNGCTA
CAAAAACAGCTTGAAGAGGCTGAGAACAAACTCATGGAATTCCAGCAGTCAGGCAAGTCA
ATGCTTCGAGAAGAGGTGACTGATGTTGACATTGCTGAGATTGTTAGCAAGTGGGACTGG
TATTCCAGTGTCAACCCTTCAACAATCTTAAAAGGAAAGCTACTGCTATTGGAAGTGTAC
TCCACAAGNGGGTTATTGCCCAGATATTCAGTTAAGCAATGGCTAATCAATCCGTCGTTT
AGGGAAGCCTTAAGCCCTACCGTCCCTAGAAGTTAATGTTTTGGGGCCACAGGTTNGGGA
AGCCCACTNGGGAAAAATNGCT

consensusID : consensus_1065#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 386
fasta sequence

                              [GTACACTTCTGTCGCTACAAAAACAGCTTGAAGAGGCTGAGAACAAACTCATGGAATTCCAGCAGTCAGGCAAGTCAATGCTTCGAGAAGAGGAGACTGATGTTGACATTGCTGAAGATTNTTAGCAGTGGACTGGTATTCCAGTGTCAANCCCTTCAACAATCTGAAAAGGAAAAGCTACTGCTATTGGAAGATGTACTCCACAAAGAGGGTTATTGGCCANAGATATTGCAGTNGAAGTCAGTGGCTAATNCNAATCCCGTCGTTCTAGGGGCAGGGCCTATCANNNCCTAACCCGTCCCNTAGCAAGCTTAAATGTTTAATGGGGTCCANCAGNTTTTAGGGAAAGGCCCGACCTNGGGGNAAAACACTTAGCTTNANTTCCC]

[+] EMBL D42929               [GTACACTTCTGTCGCTACAAAAACAGCTTGAAGAGGCTGAGAACAAACTCATGGAATTCCAGCAGTCAGGCAAGTCAATGCTTCGAGAAGAGGAGACTGATGTTGACATTGCTGAAGATTNTTAGCAGTGGACTGGTATTCCAGTGTCAANCCCTTCAACAATCTGAAAAGGAAAAGCTACTGCTATTGGAAGATGTACTCCACAAAGAGGGTTATTGGCCANAGATATTGCAGTNGAAGTCAGTGGCTAATNCNAATCCCGTCGTTCTAGGGGCAGGGCCTATCANNNCCTAACCCGTCCCNTAGCAAGCTTAAATGTTTAATGGGGTCCANCAGNTTTTAGGGAAAGGCCCGACCTNGGGGNAAAACACTTAGCTTNANTTCCC]




>consensus_1065#1
GTACACTTCTGTCGCTACAAAAACAGCTTGAAGAGGCTGAGAACAAACTCATGGAATTCC
AGCAGTCAGGCAAGTCAATGCTTCGAGAAGAGGAGACTGATGTTGACATTGCTGAAGATT
NTTAGCAGTGGACTGGTATTCCAGTGTCAANCCCTTCAACAATCTGAAAAGGAAAAGCTA
CTGCTATTGGAAGATGTACTCCACAAAGAGGGTTATTGGCCANAGATATTGCAGTNGAAG
TCAGTGGCTAATNCNAATCCCGTCGTTCTAGGGGCAGGGCCTATCANNNCCTAACCCGTC
CCNTAGCAAGCTTAAATGTTTAATGGGGTCCANCAGNTTTTAGGGAAAGGCCCGACCTNG
GGGNAAAACACTTAGCTTNANTTCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1065#0      CNGNCAATAAGATCGATCAAGGAAGAGACTGACAGAGTTAACCTGGAGATTGANGCTGCT 60
consensus_1065#1      ------------------------------------------------------------
                                                                                  

consensus_1065#0      GAGAGAGAGTATGATTTGANCCGTGCAGCTGAGCTCAAGTACGGAACACTTCTGTNGCTA 120
consensus_1065#1      -------------------------------------------GTACACTTCTGTCGCTA 17
                                                                 * ********** ****

consensus_1065#0      CAAAAACAGCTTGAAGAGGCTGAGAACAAACTCATGGAATTCCAGCAGTCAGGCAAGTCA 180
consensus_1065#1      CAAAAACAGCTTGAAGAGGCTGAGAACAAACTCATGGAATTCCAGCAGTCAGGCAAGTCA 77
                      ************************************************************

consensus_1065#0      ATGCTTCGAGAAGAGGTGACTGATGTTGACATTGCTGA-GATTGTTAGCAAGTGGGACTG 239
consensus_1065#1      ATGCTTCGAGAAGAGGAGACTGATGTTGACATTGCTGAAGATTNTTAGCAG--TGGACTG 135
                      **************** ********************* **** ******    ******

consensus_1065#0      GTATTCCAGTGTCAACCC-TTCAACAATCTTAAAAGGAAA-GCTACTGCTATTGGAAG-T 296
consensus_1065#1      GTATTCCAGTGTCAANCCCTTCAACAATCTGAAAAGGAAAAGCTACTGCTATTGGAAGAT 195
                      *************** ** *********** ********* ***************** *

consensus_1065#0      GTACTCCACAA-GNGGGTTATTGCCCAGA--TATT-CAGTTAAG--CAATGGCTAATCAA 350
consensus_1065#1      GTACTCCACAAAGAGGGTTATTGGCCANAGATATTGCAGTNGAAGTCAGTGGCTAATNCN 255
                      *********** * ********* *** *  **** ****  *   ** ********   

consensus_1065#0      ---TCCGTCGTT-TAGGGA---AGCCT--TAAGCCCTA--CCGTCCCTAG--AAGTT--A 395
consensus_1065#1      AATCCCGTCGTTCTAGGGGCAGGGCCTATCANNNCCTAACCCGTCCCNTAGCAAGCTTAA 315
                          ******** *****     ****   *   ****  *******     *** *  *

consensus_1065#0      ATGTTT--TGGGGCC--ACAGGTTN----GGGAAGCCCA--CTNGGGAAAAATNGCT--- 442
consensus_1065#1      ATGTTTAATGGGGTCCANCAGNTTTTAGGGAAAGGCCCGACCTNGGGGNAAAACACTTAG 375
                      ******  ***** *   *** **     *  * ****   ******  ***   **   

consensus_1065#0      -----------
consensus_1065#1      CTTNANTTCCC 386